Antimicrobials and Drug Efflux Flashcards

1
Q

outline the cell wall structure of gram-negative bacteria

A

thin layer of peptidoglycan in periplasmic space between inner and outer membranes

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2
Q

outline the structure of gram positive bacteria

A

only have a single lipid membrane surrounded by a cell wall composed of a thick layer of peptidoglycan and lipoteichoic acid, anchored to the cell membrane via diacylglycerol

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3
Q

outline the cell wall of mycobacteria

A

thin layer of peptidoglycan and arabinogalactin and a thick layer of mycolic acids - this cell wall surrounds a single lipid membrane

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4
Q

what are the ways in which bacteria become drug resistant

A

decreased influx
efflux pumps
drug inactivation
resistance mutations
membrane/cell wall

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5
Q

function of transpeptidases

A

responsible for cross-linking peptidoglycan strands in bacterial cell walls

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6
Q

how does penicillin/beta-lactams perform their function

A

binds and inhibits transpeptidase
leads to weakened cells that cannot resist osmotic pressure

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7
Q

how are beta-lactams able to bind to transpeptidase

A

the beta-lactam ring is structurally similar to the D-Ala-D-Ala portion of peptidoglycan precursor

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8
Q

when are beta-lactams most effective

A

against dividing bacteria which need transpeptidase to synthesise new cell walls

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9
Q

what type of bacteria can beta-lactams target

A

gram+
and some gram-

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10
Q

how does the use of penicillin lead to antibacterial resistance

A

bacteria develop beta-lactamase that degrade the beta-lactam ring
inhibiting its transpeptidase binding capabilities

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11
Q

what is ciprofloxacin

A

a flouroquinolone

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12
Q

what does ciprofloxacin bind to

A

DNA gyrase
topoisomerase IV

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13
Q

function of DNA gyrase and how does ciprofloxacin affect it

A

cleaves DNA backbone
ligases the DNA - ATP dependent
done by introducing negative supercoils
ciprofloxacin - prevents it from re-ligating

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14
Q

how can bacteria become resistant to ciprofloxacin

A

mutations in the gyrAB and parCE genes to reduce affinity to DNA gyrase and topoisomerase IV
overexpression of efflux pumps to reduce ciprofloxacin M

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15
Q

how does ciprofloxacin inhibit topoisomerase IV

A

it intercalates into DNA at the nicks introduced by topoisomerases

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16
Q

what is erythromycin

A

a macrolide
ribosome 50s subunit inhibitor - protein synthesis inhibitor

17
Q

how do macrolides inhibit protein synthesis

A

bind to the exit tunnel of 50s ribosome subunits

18
Q

how do bacteria gain resistance against macrolides

A

methylation of ribosomes to reduce macrolide affinity

19
Q

function of tetracycline

A

prevents protein synthesis by binding to the 30s subunit
inhibits the tRNA’s binding to the acceptor side of the mRNA

20
Q

how do bacteria develop resistance to tetracycline

A

efflux pumps
changing the 30s ribosome subunit binding sites

21
Q

what is polymyxin B

A

a group of peptides effective against gram- bacteria

22
Q

what is the mechanism of action of polymyxin B

A

they act as cationic detergents that bind to negatively charged LPS on the outer membrane
results in disruption of the outer membrane
outer membrane disruption allows polymyxin to disrupt inner membrane
increases cell permeability
leads to cell death

23
Q

why have polymyxin’s been historically restricted to topical use (like creams n stuff)

A

they are very toxic when given systemically

24
Q

how do gram- bacteria in particular develop resistance to polymyxin B

A

they modify their LPS by substituting anionic groups with cationic
formation of capsules to protect their membrane
over-expression of OprH - a protein that increases outer membrane stability by binding to LPS

25
how do bacterial MDR efflux pumps work
utilise energy from the proton/sodium motive force to catalyse substrate efflux
26
how do the ABC efflux family export substrates
using ATP energy from hydrolysis
27
what is the major pro of efflux pumps
they can export many classes of drugs - very promiscuous allow bacteria to exist in many extreme environments
28
what does the distal binding pocket in RND efflux pumps contain that allow it to export hydrophobic molecules
contains many residues that are hydrophobic charged and uncharged
29
what is a major factor for the level of promiscuousity for RND efflux pumps
various channels for drug entry 3 channels that can detect whether the drug is polar/non-polar and a mix in between
30
why is hard to design an efflux pump inhibitor
because of the multiple pockets and promiscuousness of RND efflux pumps, the inhibitors usually just become substrates themselves and become exported
31
how can EPI's be used to inhibit RND efflux pumps
bind to accessory proteins of the AcrAB-TolC complex
32
how can NSC 60339 act as a EPI
binds to the cleft in between the lipoyl and alpha-beta barrel domains in AcrAB acts as wedge that stops conformational change in the RND pump
33
how can synthetic peptides act as EPI
aimed to destabilise the AcrB trimerisation interface they do work but that is not how they work and we don't know how
34
how can you test the efficacy of an EPI
nile red is a hydrophobic molecule that binds to membranes in hydrophobic environments it is fluorescent if effluxed into aqueous environment it loses fluorescence