Amino Acids Structures Flashcards

1
Q
A

phe

neutral, nonpolar

aromatic

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2
Q
A

asp

acidic, polar

  • side chain is carboxyl after one CH2
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3
Q

Which amino acids are polar?

A

aliphatic - Ser, Thr, Cys, Gln, Asn

aromatic - Tyr

Several Throbbing Cysts Glow As Turqouise

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4
Q
A

pro

neutral, nonpolar

not an amino acid, but a cyclic amino or imino acid

with a secondary amide contained within the ring

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5
Q

the amine group has a pka normally around what?

and the carboxylic acid group?

A

the carboxyl group is normally around pH of 2

amine around pH of 9

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6
Q
A

asn

neutral, polar

the amine in the side chain is NEVER protonated

  • contains carboxamide (carboxyl w/ NH2 replacing OH) attached to CH2
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7
Q
A

ser

neutral, polar

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8
Q
A

alanine

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9
Q

an amino acid has what 4 groups

A

a carboxyl, amine, carbon** side chain, and hydrogren

**except glycine has a hydrogen as the side chain

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10
Q

What are the non-polar amino acids?

A

aliphatic - Met, Gly, Ala, Val, Leu, Ile, Pro,

aromatic - Phe, Trp

Many Gleeful Alligators Try Phor Vaping Leisurely In Ponds

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11
Q

Which amino acids have acidic side chains?

A

Glu, Asp

  • same as those with ‘negative’ side chains
  • both have COOH groups
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12
Q
A

tyr

neutral, polar

aromatic

  • side chain is phenol
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13
Q

Which amino acids have a net positive charge at neutral pH?

A

Arg, Lys, His

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14
Q
A

met

neutral, nonpolar

  • S comes after two CH2s
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15
Q

Which amino acids have basic side chains?

A

same as those with positive charge

His, Lys, Arg

  • all also have N in their side chains
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16
Q
A

leu

neutral, nonpolar

  • one of the 3 brainched chain AAs
17
Q
A

thr

neutral, polar

2 chiral centers

18
Q
A

glu

acidic, polar

  • side chain is carboxyl after two CH2s
19
Q
A

Sec (Selenocysteine)

Neutral

Polar

  • selenium replaces sulfur in cysteine’s thiol group
20
Q
A

ile

neutral, nonpolar

2 chiral centers (4 configurations)

21
Q

What amino acids have aliphatic side chains?

A

this is most easily remembered by just knowing the aromatic side chain amino acids and knowing that ALL others are aliphatic

22
Q

Which amino acids have a net negative charge at neutral pH?

A

Asp, Glu

23
Q
A

lys

basic, polar

  • pka of side chain is more basic than amine
  • side chain is an amino group after four CH2s
24
Q
A

trp

neutral, polar

aromatic

  • contains an indole (benzene + pyrrole) group attached to -CH2 via the double bonded C of its pyrrole furthest from the N
25
Q
A

arg

basic, polar

  • pka of side chain is more basic than amine
  • side chain is guanidine after three CH2s
26
Q
A

val

neutral, nonpolar

  • one of the 3 branched-chain AAs
27
Q
A

gln

neutral, polar

  • contains carboxamide (carboxyl w/ NH2 replacing OH) attached to second CH2
28
Q
A

his

basic, polar

aromatic

  • side chain is imidazole attached to one CH2 via the C furthest from the lone N
29
Q
A

cys

neutral, polar

  • contains a thiol (R-S-H) on a CH2
30
Q

What are the branched chain amino acids?

How can their structures be remembered?

A

Valine, Leucine and Isoleucine

  • Valine is the simplest and contains a “V” of methyls branching off a carbon
  • Leucine is just valine with an extra carbon
  • Isoleucine is just leucine with its branching from the first carbon instead
31
Q

What amino acids have aromatic side chains?

A

Phe, Trp, Tyr, His

Tyrannosauruses Trying to Hi-five are Phunny

32
Q
A

Glycine