Amino Acids as precursors Flashcards

1
Q

what are AA used for

A

gluconeogenesis, protein building blocks

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2
Q

what is the AA that serves directly as a neurotransmitter?

explain

A

glycine

Functions directly as a neurotransmitter- acts to block impulses traveling in the spinal cord to stimulate skeletal muscle

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3
Q

Glycine is also a precursor for what

A

clycocholic acid (bile salt)

It is conjugated to cholesterol derivative to form glycocholic acid (bile salt)

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4
Q

biochemist’s simple definiton of neurotransmitter ( 4 things)

A

Molecule that is synthesized and stored in synaptic vesicles in neural cells

Release is triggered by an action potential

Bound & recognized by target cell

Activity can be regulated

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5
Q

which nucleic base is synthesized de novo using glycine

A

purines

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6
Q

what does glycine condenses with in the first step of heme biosynthesis

what is end product?

A

succinyl CoA

(protoporphyrin IX + Iron) to make heme

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7
Q

what are the 2 predominant circulation AA’s

A

Along with glutamine, a predominant circulating amino acid

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8
Q

what does Alanine do?

what reaction is involved?

what is the name of the relevant cycle?

A

Transports amino groups from muscle to liver (transamination from muscle pyruvate) in a process called the glucose-alanine cycle

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9
Q

what is Serine used for?

A

Source of one-carbon fragments (folate derivatives) used in biosynthesis

one carbon fragments with folate is used are 1 C building blocks

many steps require addition of 1 carbon units

tetrahydrofolate is vitamin cofactor

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10
Q

describe glucose alanine cycle

A

glucose broken down to pyruvate

reacted with glutamate via alanine aminotransferase to make alpha-ketogluterate and alanine

carried in blood to liver

alanine reacts with alpha ketogluterate to remake glutamate and pyruvate using same enzyme ( alanine aminotransferase)

pyruvate used to regenerate glucose through gluconeogenesis

Glutamate releases NH4+ in liver with goes through urea cycle and is excreted as urea

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11
Q

glutamine is used for what

A

serves as amino transporter like alanine

source of NH4+ in kidney

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12
Q

what else is glutamine involved in

A

Amino group donor in purine biosynthesis

Amino group donor in biosynthesis of amino sugars

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13
Q

what is the key rxn of amino sugar synthesis

A

Fructose-6-P + glutamine —>
Glucosamine-6-P + glutamate

-all amino sugars are then derived from Glucosamine-6-P

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14
Q

glutamate is used for what

A
  • primary Neurotransmitter in CNS (flavor enhancer)
  • acts on both ion channels and G coupled receptors
  • in food as MSG
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15
Q

where are aminosugars found?

A

extracellular matrix and certain connective tissues

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16
Q

how is glutamate made into GABA? name enzyme and cofactor used

what is GABA receptor a target for?

A

glutamate a source of gamma amino butyrate (GABA) via decarboxylation of the alpha-carboxyl.
Enzyme: glutamate decarboxylase and PLPcofactor

GABA is the major inhibitory transmitter in the brain;

  • the GABA receptor is the target of benzodiazepines/ barbiturates
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17
Q

glutamate also participates in what reaction involving amino groups

A

-transaminations: glutamate is the source of amino groups for most other amino acids

-donates n terminus amine group to form alpha ketogluterate ; converting alpha keto acid to L-amino acid (generic)
Enzyme: aminotransferase

  • Pyridoxal phosphate (PLP) is cofactor
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18
Q

PLP is cofactor in what types of reactions

A

decarboxylations and transaminations

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19
Q

gluatamate is converted to glutamine via what

A
  • ammonia fixation

- glutamate + NH4 + + ATP –> glutamine + ADP + Pi + H+

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20
Q

minor pathway that makes glutamate and fixates ammonium ion

A

NH4 + alpha-ketogluterate –> glutamate + H2O

enzyme: glutamate dehydrogenase

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21
Q

methionine reacts with ATP to form what

A

S-adenosyl methionine (SAM)- source of methyl groups for most methylation reactions

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22
Q

SAM can be decarboxylated to leave

what cofactor used?

A

a propylamine residue attached to the sulfur - precursor of spermine and spermidine (“polyamines”)

PLP used

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23
Q

decarboxylated adoMet reacts with what enzymes

what is made ultimately

A

either propylaminotransferase I: or II to make polyamines

  • polyamines are made: spermidine and spermine
24
Q

what charge do polyamines have?

what does this help with

A
  • positively charge amine groups

- helps with binding of nucleic acids

25
how is putrecine made?
decarboxylation of ornithine
26
what is putricine reacted with? via what enzyme? what products does it make?
it is reacted with decarboxylated adoMet via enzyme propylaminotransferase I makes spermidine and methylthioadenosine
27
spermine is made by what? producing what
reacting spermidine with adoMet via enzyme propylaminotransferase II producing [CH3--S--Adenosine] along with spermine
28
arginine: what two uses
- immediate precursor of urea via arginase in urea cycle | - Source of NO, a second messenger
29
how many steps to make NO from arginine what is enzyme what cofactors required?
2 steps nitric oxide synthase flavin and tetrahydrobiopterin
30
how does NO work?
activates guanylyl cyclase production of cGMP in target cells... cascade
31
what is NO given as medicine for?
sickle cell anemia to prevent log jams
32
creatine is made from what
arginine, glycine and methyl group from adoMet (methionine)
33
phosphocreatine is
an energy reserve AKA energy component buffering systems
34
histamine is made from what
histidine (decarboxylated by histidine decarboxylase with PLP to make it
35
histamine is used for
a major stimulant of acid release in the stomach and in systemic reactions to allergens
36
in normal conditions, which ringed AA is dietary essential AA
phenylalanine
37
What is tyrosine made from
phenylalanine
38
what cofactor is needed for tyrosine synthesis
tetrahydrobiopterin which is regenerated by NADH via enzyme dihydrobiopterin
39
phenylalanine converted to tyrosine by what enzyme
phenylalanine hydroxylase
40
what does biopterin cofactor provide for tyrosine synthesis
the electrons for reduction of oxygen in hydroxylation of phenylalanine- regeneration requires specific reductase
41
what is PKU? how is it controlled via diet? how is it screened?
Deficiency of phenylalanine hydroxylase (phenylketonuria, PKU) is usually screened for at birth (blood sample to measure elevated phenylalanine levels) - controllable by specialized diet with limited phe, and tyr supplementation - less required by puberty
42
Deficiency of the biopterin reductase is more severe. why?
- is more severe and cannot be controlled by dietary means | - reason is because tetrahydrobiopterin is needed in other pathways so more severe impact
43
what causes disease state of PKu
excess phenylalanine causes developmental problems that is why diet is less critical after puberty
44
what is tyrosine a precursor of
Tyrosine is a precursor of several important molecules: dopa (dihydroxyphenylalanine), dopamine, epinephrine/norepinephrine also precursor of thyroxine/T3 In addition, melanin is derived by oxidation of dopa catalyzed by tyrosinase (lack of this e nzyme results in classic albinism)
45
order in which catecholamines are made
tyrosine to Dopa to Dopamine to Norepinephrine to Epinephrine
46
dopamine clinical correlate
Parkinsons
47
how is dopamine made
by decarboxylation of dopa
48
what are Norepi and epi
Both epinephrine and norepinephrine are neurotransmitters and signaling molecules (fight or flight response - sympathetic nerves)
49
What is T3 called and how is it made? what is T4 called and how is it made?
Active form is tri-iodothyronine (T3; T4 is thyroxine). This is formed by iodination and condensation of tyrosine residues in thyroglobulin followed by proteolysis of the protein and hormone release
50
what kind of tyrosine is in T3 and T4?
iodinated tyrosine
51
tyrosines in what molecule are iodinated for T3 and T4 production?
thryoglobulin
52
what is tryptophan used for what neurotransmitter? what 2 types of rxns yield this? what are the cofactors mentioned?
serotonin production Hydroxylation (5-position) followed by decarboxylation yields serotonin, a multi-faceted neurotransmitter. The hydroxylation step requires Biopterin cofactor; decarboxylation step requires PLP cofactor.
53
what else is made from Trp? can this be sufficient source of this molecule?
Some tryptophan can be degraded to nicotinic acid (precursor for NAD+) but this usually is insufficient to eliminate dietary need.
54
what is the 3rd thing that can be made from trp
Indolacetate: plant growth factor
55
decarboxylation and transamination cofactor
PLP
56
biopterin is used in what rxns
hydroxylation