Amino acids and proteins Flashcards
main source of protein
muscles
proteins in ear
hair cells containing myosin and actin which contracts
protein in eyes
with in retinas which have cells containing opsin
opsin
have tubes formed across membrane
answer to different waves of light
opsin dependents
how narrow or wide pores are in cross sections
B -blue wavelength
420nm
G - green wavelength
530nm
R - red wavelength
560nm
protanopes
does not have the protein to show R
deuteranopes
does not have to protein to show G
protanomalous
R wavelength shifts more towards G
deuteranomalous
G wavelength shifts towards R
Protein classes
fibrous and globular
fibrous uses
insoluble for structure, strength/protective layers
silk web
coating - secreting granules/ seeds/viruses
intracellular cytoskeleton, extracellular matrix
globular
soluble - dynamic function
dynamic functions of globular
enzymes transport protein hormones defence - antibodies toxins in membrane
diversity of proteins
one repeating subunit
20 different subunits
one repeating subunit
unreactive and boring
such as polyethylene
20 different subunit
has many different combination
amino acids contains
amine
carboxylic acid
R group
central alpha carbon
zwitterionic for
protonation and deprotonation
protonation
amine group becomes NH3+
deprotonation
carboxyl becomes COO-
chirality
isomers arranged in 2 different ways
L isomer
life isomer
D isomer
optical/stereoisomer - less common
example of chirality - alanine
L-Alanine and D-Alanine
R groups
20 different side chain
non polar - hydrophobic simplest
cysteine - Cys - C
methionine - Met - M
non polar - aliphatic (branched)
valine - Val - V
leucine - Leu - L
isoleucine - Ile - I
cyclic - Proline - Pro - P
other non polar
alanine - Ala - A
glycine - Gly - G
phenylalanine - Phe - F
Tryptophan - Trp - W
uncharged polar -hydrophilic - OH
Serine - Ser - S
Threonine - Thr - T
Tyrosine - Tyr - Y
uncharged polar - C=O NH2
Asparagine - Gln - Q
Glutamine - Asn - N
-ve charged acidic
Aspartic acid - Asp - D
Glutamic acid - Glu - E
+ve polar caused by N+
Lysine - Lys - K
Arginine - Arg - R
Histidine - His - H
Cysteine
sometimes polar
weak acid
peptide bond
join carboxyl group and amine group by condensation reaction
during translation of mRNA
ribosomes provides site for reaction
breaking peptide bond
using protease or extreme condition
polypeptide
sequence of residue
how sequence is described as
N to C
estimate molecular mass
no. residue * 110
structure name - primary
sequence
structure name - secondary
local
structure name - tertiary
whole proteins
structure name - quaternary
different proteins