ALL BACTERIA! Flashcards
Salmonella (general): Similar to
Shigella, E coli (Enterobacteriaceae Family)
Enteroaggregative E. coli (EAEC): Similar to
EPEC
Acinetobacter baumanii: At Risk
Hospitals
Acinetobacter baumanii: Disease
OPPORTUNIST!
Nosocomial infections
Acinetobacter baumanii: Gram stain
-
Acinetobacter baumanii: Negative for: (2)
Oxidase
Sugar fermentation
Acinetobacter baumanii: Oxygen
aerobe
Acinetobacter baumanii: Reservoir
Hospital
Acinetobacter baumanii: Shape
short rod
Acinetobacter baumanii: Transmission/vector/ habitat
Indwelling medical devices
Acinetobacter baumanii: Treatment
Multidrug resistant
Acinetobacter baumanii: Virulence Factors (4)
Capsular polysaccharides
Adhesins
Proteolytic/lipolytic enzymes
LPS
Bordetella pertussis: At Risk
Infants more likely to die
Bordetella pertussis: Diagnosis (3)
Contact history, classic cough, lymphocytosis
**Requires fresh, Bordetella-optimized media for growth (not typically used)
PCR for repeat insertion sequences
Bordetella pertussis: Disease
Pertussis (whooping cough)
Bordetella pertussis: Epidemiology
Major childhood killer pre-1940
–Highest fatality of all among children before vaccine!
Re-emerging now: waning immunity, Agic divergence, decreased vaccination
Bordetella pertussis: Gram stain
-
Bordetella pertussis: Incubation Period
7-10 days
Bordetella pertussis: Oxygen
Obligate aerobe
Bordetella pertussis: Pathogenesis (6 steps)
- intro via water droplets
- interact w/ciliated epithelial cells (trachea/nasopharynx)
- adherence
- multiplication/toxin production -> local inflammation, mucous secretion, patchy ulcers, cyanosis, pneumonia
- host evasion
- spread
Bordetella pertussis: Reservoir
NONE - only infects humans
Bordetella pertussis: Shape
coccobacilli
Bordetella pertussis: Symptoms
[Catarrhal stage] runny nose, sneezing, low-grade fever, mild cough
[Paroxysmal stage] whooping cough, vomiting, cyanosis
Bordetella pertussis: Transmission/vector/habitat
Aerosol
Bordetella pertussis: Treatment
Treat for hypoxia
Erythromycin (alt: tetracycline or chloramphenicol)
–Resistant to penicillin and ampicillin
Treat household contacts prophylactically
Bordetella pertussis: Vaccine
DTP (trivalent): side-effects - encephalopathy and permanent neurologic sequelae (not used anymore)
DTaP (acellular trivalent component) introduced mid-90s
-> contains pertussis toxin, FHA, pertactin, and fimbrae
NO lifelong immunity
Bordetella pertussis: Virulence Factors (6)
PERTUSSIS TOXIN (inhibits Gi for adenylate cyclase -> adenylate cyclase activated -> cAMP accumulation -> lymphocytosis, histamine-sensitivity, enhanced insulin secretion)
ADENYLATE CYCLASE toxin (catalyzes cAMP from ATP -> impaired leukocyte function and apoptosis)
DERMONECROTIC toxin (VSM contraction => ischemic necrosis of lung tissue)
TRACHEAL CYTOTOXIN (CILIOSTASIS, kills tracheal epithelial cells, proinflammatory)
Endotoxin (LPS)
Several adhesins: pili, Filamentous hemagglutinin, Pertactin, Tracheal colonization factor (-> colonization)
Campylobacter (jejuni): At Risk (3)
Infants to young adults in developed
Infants in developing
Immunocompromised, esp. with humoral immunodeficiency (severe)
Campylobacter (jejuni): Diagnosis (4)
Gm stain stool specimen
Enrich with filters (very small)
Hippurate positive (very diagnostic)
Culture at 42C in microaerophilic conditions (body temp of poultry)
Campylobacter (jejuni): Disease (2)
Diarrhea from inflammatory enteritis
Bacteremia (rare)
Campylobacter (jejuni): Epidemiology (3)
MOST COMMON cause of diarrhea in the world
Typically sporadic cases
Multiple simultaneous cases usually point to common contaminated source
Campylobacter (jejuni): Gram stain
-
Campylobacter (jejuni): Incubation Period
3-5 days
Campylobacter (jejuni): Infectious dose
Low infectious dose (500 = 1 drop of raw chicken juice)
Campylobacter (jejuni): Oxygen
microaerophilic
Campylobacter (jejuni): Pathogenesis (3 steps)
- survive gastric barrier
- arrive in small/large bowel - inflammation
- bloodstream (rare)
Campylobacter (jejuni): Prevention (2)
Pasteurization of milk, cooking meat (esp. poultry)
Campylobacter (jejuni): Reservoir
Animals (esp. poultry -does not make animals sick)
Campylobacter (jejuni): Shape
curved or comma with uni or bipolar flagellum
Campylobacter (jejuni): Symptoms
Prodrome (fever, malaise, headache)
fever; abd. pain; diarrhea (few days to a week)
Complications = autoimmunity to nerves (Guilliam-Barre syndrome)
Campylobacter (jejuni): Transmission/vector/ habitat (3)
Food (esp. raw chicken), milk, or water
Campylobacter (jejuni): Treatment
Oral rehydration therapy
Antimicrobial therapy as indicated (erythromycin; alt - cipro)
Chlamydophilia (general): Diagnosis (4)
General Diagnosis
- Check for group antigen
- Compare acute and convalescent Ab titers
- Direct fluorescent Ab exam of appropriate clinical specimens
- PCR
Chlamydophilia (general): Gram stain
Gm- (by phylogeny)
Chlamydophilia (general): Life Cycle (forms, 3 steps)
Elementary Bodies (EB): small, non-multiplying, with a rigid bacterial-like cell wall -> transmits infection
Initial Bodies (IB) [aka reticulate bodies (RB)]: larger, actively multiplying, lack rigid wall, non-infectious
Intracellular growth
- EB enter by inducing host phagocytosis (even in non-phagocytotic cells)
- EB lose cell wall during first 24h, double in diameter, and synthesize RNA to yield IB
- IB divide by binary fission -> some progeny converted back to EB
Chlamydophilia (general): Shape
pleomorphic
Chlamydophilia (general): Special growth conditions
OBLIGATE intracellular (canNOT make ATP => depends on host ATP)
EB -> IB (RB) in host cell -> divide -> host cell dies and release EBs
Chlamydophilia (general): Treatment
Tetracyclines are effective but single high dose azithromycin may be more indicated
Any antibiotic used must enter cells
Chlamydophilia pneumoniae: Diagnosis
Antibody assay
Chlamydophilia pneumoniae: Disease
Atypical (diffuse) pneumonia
Chlamydophilia pneumoniae: Epidemiology (2)
Causes 10% of pneumonia in adults
May play a role in coronary atherosclerosis
Chlamydophilia pneumoniae: Number of serotypes
1 serotype
Chlamydophilia pneumoniae: Symptoms (3)
Pneumonia/bronchitis
Gradual onset of cough
Little/no fever
Chlamydophilia pneumoniae: Transmission/vector/ habitat
Person-to-person via aersol
Chlamydophilia psittaci: At Risk
Contact w/birds
Chlamydophilia psittaci: Diagnosis (2)
Pathogen in blood or sputum
Antibody assay
Chlamydophilia psittaci: Disease
Psittacosis (parrot fever)
Chlamydophilia psittaci: Number of serotypes
1 serotype
Chlamydophilia psittaci: Pathogenesis
Disseminated infection that targets epithelial cells, endothelial cells, Mos
Chlamydophilia psittaci: Reservoir
Birds (induces chronic subclinical infection with constant fecal excretion)
Chlamydophilia psittaci: Symptoms (3)
Fever and headache
Severe -> interstitial pneumonia
Chlamydophilia psittaci: Transmission/vector/ habitat
Inhalation of bird feces
Chlamydia trachomatis, serotypes L1-3: Diagnosis
Ag testing to differentiate between C. trachomatis serotypes
Chlamydia trachomatis, serotypes L1-3: Disease
Lymphogranuloma venereum
Chlamydia trachomatis, serotypes L1-3: Symptoms (2)
Painless papule progresses to ulcerating vesicle (2 weeks post-exposure)
Can -> painful suppurating disease of regional lymph nodes
Chlamydia trachomatis, serotypes L1-3: Transmission/vector/ habitat
STD
Chlamydia trachomatis, serotypes A-C: At Risk (2)
Poor hygiene
Asia and Africa
Chlamydia trachomatis, serotypes A-C: Diagnosis (1)
Ag testing to differentiate between C. trachomatis serotypes
Chlamydia trachomatis, serotypes A-C: Disease
Trachoma (chronic conjunctivitis)
Chlamydia trachomatis, serotypes A-C: Epidemiology (1)
World’s leading cause of preventable blindness
Chlamydia trachomatis, serotypes A-C: Pathogenesis
Chronic conjunctival reinfection causes infolding of eyelashes => corneal scarring and blindness
Chlamydia trachomatis, serotypes A-C: Prevention (4)
Surgery, prophylactic antibiotics, facial cleanliness, environmental improvements/sanitation
Chlamydia trachomatis, serotypes A-C: Special Features: Intra vs extracellular, presence of capsule, invasive or not
More invasive serotypes
Chlamydia trachomatis, serotypes A-C: Symptoms (5)
Cloudy cornea Discharge from eye Swelling of lymph nodes in front of ears Swollen eyelids Turned-in eyelashes
Chlamydia trachomatis, serotypes A-C: Transmission/vector/ habitat (2)
Mechanical (finger to eye)
Flies
Chlamydia trachomatis, serotypes A-C: Treatment
Annual universal treatment with azithromycin
Chlamydia trachomatis, serotypes D-K (perinatal): At Risk
Neonates
Chlamydia trachomatis, serotypes D-K (perinatal): Diagnosis (1)
Ag testing to differentiate between C. trachomatis serotypes
Chlamydia trachomatis, serotypes D-K (perinatal): Disease (2)
Inclusion conjunctivitis Infant pneumonia (usually an extension of ocular disease)
Chlamydia trachomatis, serotypes D-K (perinatal): Epidemiology (2)
Inclusion conjunctivitis - most common vertically transmitted neonatal disease
Occasionally seen beyond neonatal age where environ. contamination (swimming pools, etc.) is involved
Chlamydia trachomatis, serotypes D-K (perinatal): Symptoms (3)
Large lymphoid follicles
Papillary hyperplasia of the conjunctiva
Red, irritable eye with sticky discharge
Chlamydia trachomatis, serotypes D-K (perinatal): Transmission/vector/ habitat (3)
Perinatal
Swimming pools
STD
Chlamydia trachomatis, serotypes D-K: Diagnosis (2)
Yearly rapid PCR test of urine for sexually active women
Ag testing to differentiate between C. trachomatis serotypes
Chlamydia trachomatis, serotypes D-K: Disease (2)
Non-gonoccocal urethritis
More severe -> epididymytis, salpingitis -> infertility
Chlamydia trachomatis, serotypes D-K: Epidemiology (2)
Possibly most common venereal disease
Infection increases chance of HIV transmission
Chlamydia trachomatis, serotypes D-K: Symptoms (2)
Males: usually asymptomatic (purulent urethral discharge)
Females: frequently asymptomatic
Chlyamydia trachomatis, serotypes D-K: Transmission/vector/habitat
STD
Chlamydia trachomatis, serotypes D-K: Treatment (1)
Single high dose azithromycin for BOTH sexual partners
Corynebacterium diphtheriae: At Risk (2)
Developing countries w/inadequate pediatric immunization and medical care
Travelers (need booster DTaP)
Corynebacterium diphtheriae: Diagnosis (4)
Tentative: tellurite agar, Tinsdale’s medium, and Leoffler media (+ for METACHROMATIC GRANULES)
Definitive:
- -Toxin production (Elek test)
- -PCR for toxin gene
- -Immunoassay of serum
Corynebacterium diphtheriae: Disease (1)
Diphtheria: infection of skin and/or throat
Corynebacterium diphtheriae: Epidemiology (3)
Once a major cause of death in US -> in pre-immunization era, major fraction of pop. were carriers
Epidemics in poorly immunized pop. w/inadequate medical care
Presents as necrotizing skin infection in the tropics -> spread by contact
Corynebacterium diphtheriae: Gram stain
!!+++++++!!
Corynebacterium diphtheriae: Incubation Period
2-5 days
Corynebacterium diphtheriae: Life Cycle
Do NOT form spores!
Corynebacterium diphtheriae: Other
All other corynebacteria (diptheroids) are normal inhabitants of our skin/throat
Corynebacterium diphtheriae: Oxygen
aerobe
Corynebacterium diphtheriae: Prevention (2)
Immunity depends on presence of Ab against toxin (antitoxin)
Give DTaP booster to travelers
Corynebacterium diphtheriae: Reservoir
NONE - only infects humans
Corynebacterium diphtheriae: Shape
rod
club-shaped
(pleomorphic)
Corynebacterium diphtheriae: Symptoms (3)
Fever, cough, sore throat
Gray PSEUDOMEMBRANE formation in severe cases (thrush)
Inflammation of lymph nodes
Corynebacterium diphtheriae: Transmission/vector/habitat
Aerosol
Corynebacterium diphtheriae: Treatment (2)
Horse antitoxin immediately (hypersensitivity and anaphylactic shock common)
Penicillin prophylactically or as treatment
Corynebacterium diphtheriae: Vaccine
Toxoid - DTaP good for 10 years
Corynebacterium diphtheriae: Virulence Factors (1)
DIPHTHERIA EXOTOXIN - blocks eukaryotic cell protein synthesis (inactivates EF2) => produces systemic symptoms)
- -Lethal to eukaryotic cells
- -Targets heart, kidney, nervous system
- -Exotoxin has 2 domains which dissociate within endosome - cell surface receptor (B, promotes endocytosis) and toxin domain (A)
Coxiella burnetii: At Risk (2)
Exposure to barn animals, especially birth of barn animals
Cardiac vascular disease can increase risk of endocarditis
Coxiella burnetii: Diagnosis (3)
Serologic testing for C. burnetii Ags
Indirect immunofluorescence assay (most dependable)
Immunohistochemical staining and DNA detection methods of infected tissues
Coxiella burnetii: Disease (2)
Q fever
Can progress to chronic endocarditis
Coxiella burnetii: Gram stain
-
Coxiella burnetii: Prevention (4)
Dispose of birth products of sheep and goats
Restrict access to barns/labs housing potentially infected animals
Vaccination
Counseling
Coxiella burnetii: Reservoir
Sheep and cattle -> tick and so on
Coxiella burnetii: Special growth conditions
Obligate intracellular
Coxiella burnetii: Symptoms (5)
Intersitital pneumonia, fever, headache, rash (some patients), elevated LFTs
Coxiella burnetii: Transmission/vector/ habitat (2)
Inhaling Coxiella from placental tissue (carcass) of sheep or cattle
Spore-like stage transmits the infection
Coxiella burnetii: Treatment (3)
Doxycycline
Quinolone Abx
Chronic endocarditis -> aggressive therapy, surgery
Diffuse adhering E. coli (DAEC): At Risk
Older children in developing countries
Diffuse adhering E. coli (DAEC): Diagnosis (2)
PCR for virulence genes
Tissue culture -> diffuse adherence
Diffuse adhering E. coli (DAEC): Disease
Diarrhea
E. coli (general): Diagnosis (7)
Stool samples Enrich in Gm- broth PCR -> virulence factors Toxin analysis Antigen testing Tissue culture assay for adherence Lac +!
E. coli (general): Gram stain
-
E. coli (general): Negative for: (1)
Oxidase
E. coli (general): Oxygen
fac. Anaerobe
E. coli (general): Positive for: (3)
Lactose
Glucose (+gas)
Nitrate
E. coli (general): Prevention (2)
Grain fed cattle harbor more acid shock resistant E. coli
–Hay feeding leads to a higher pH => lack of adaptation of pathogenic E. coli
Hygiene
E. coli (general): Shape
rod
Ehrlichioses: At Risk (1)
Exposure to ticks
Ehrlichioses: Disease (2)
Monocytic Ehrlichiosis
Granulocytic Ehrlichiosis
Ehrlichioses: Epidemiology (1)
Found in southern US
Ehrlichioses: Gram stain
-
Ehrlichioses: Pathogenesis (1)
Infects monocytes and granulocytes
Ehrlichioses: Special growth conditions (1)
Obligate intracellular
Ehrlichioses: Symptoms (3)
Fever, lymphocytopenia, elevated LFTs
Ehrlichioses: Transmission/vector/ habitat
Ticks
Ehrlichioses: Treatment (1)
Tetracyclines
Enteroaggregative E. coli (EAEC): At Risk
Children in developing countries
Enteroaggregative E. coli (EAEC): Diagnosis (2)
PCR for virulence genes
Tissue culture -> aggregative adherence
Enteroaggregative E. coli (EAEC): Disease (1)
Chronic Diarrhea
Enteroaggregative E. coli (EAEC): Epidemiology (2)
Common in developing countries
2012 outbreak in Germany of O104:H4 due to strain that expressed STX
Enteroaggregative E. coli (EAEC): Pathogenesis (1)
Aggressive epithelial cell attachment
Enteroaggregative E. coli (EAEC): Special Features: Intra vs extracellular, presence of capsule, invasive or not
No A/E lesions
Enteroaggregative E. coli (EAEC): Symptoms (2)
Persistent diarrhea
Weight loss
Enteroaggregative E. coli (EAEC): Treatment (1)
Fluoroquinolones (travelers and HIV+)
Enteroaggregative E. coli (EAEC): Virulence Factors (3)
Heat stable-like toxin (EnteroAggregative stable toxin; EAST)
Plasmid encoded toxin (Pet)
Hemolysin
Enterobacter cloacae: At Risk (1)
Hospital setting following antibiotic treatment
Enterobacter cloacae: Disease (4)
OPPORTUNIST!
Infections of burns, wounds, respiratory, UT
Enterobacter cloacae: Gram stain
-
Enterobacter cloacae: Oxygen
fac. Anaerobe
Enterobacter cloacae: Pathogenesis
Forms biofilms
Enterobacter cloacae: Positive for: (1)
Lactose
Enterobacter cloacae: Shape
rod
Enterohemorrhagic E. coli (EHEC): At Risk (2)
HUS in ~7% of cases (due to RBC destruction and damage to BV wall lining)
–Acute renal failure (via HUS) in severe cases (children <10; elderly)
Enterohemorrhagic E. coli (EHEC): Diagnosis (3)
Sorbitol negative growth (RED on Sorbitol MacConkey Agar)
H7 serology and toxin analysis
PCR/Immunoassay for Shiga-like toxins
Enterohemorrhagic E. coli (EHEC): Disease (2)
Bloody diarrhea
Hemolytic uremic syndrome (HUS) if toxin spreads -> due to Shiga-like toxin
Enterohemorrhagic E. coli (EHEC): Incubation Period
3 days
Enterohemorrhagic E. coli (EHEC): Infectious dose
Low infectious dose (~100)
Enterohemorrhagic E. coli (EHEC): Negative for: (1)
Sorbitol**
Enterohemorrhagic E. coli (EHEC): Number of serotypes
O157:H7 = most important
Enterohemorrhagic E. coli (EHEC): Pathogenesis (5)
- COMMON pili-mediated attacment (weak)
- T3SS induced formation of attach/efface lesions
- other E. coli proteins recruit host cell actin (alter morphology and impact signal transduction pathways in host cell to form A/E lesions)
- lesions lead to effacement retraction of host cell microvilli)
- interaction of other virulence factors to attach (Tir-intimin) and produce pedestals (actin polymerization; role unclear)
Enterohemorrhagic E. coli (EHEC): Reservoir
Cattle (immune - lack host glycolipid for Shiga-toxin binding) but 28% shed EHEC
Enterohemorrhagic E. coli (EHEC): Similar to
Shigella
Enterohemorrhagic E. coli (EHEC): Special Features: Intra vs extracellular, presence of capsule, invasive or not
Mostly extracellular
Enterohemorrhagic E. coli (EHEC): Symptoms (3)
Abd. Pain, bloody diarrhea,
NEVER systemic
HUS
Enterohemorrhagic E. coli (EHEC): Transmission/vector/ habitat (3)
Food/water
Animals in petting zoos
Person-to-person
Enterohemorrhagic E. coli (EHEC): Treatment (2)
Supportive care
Antibiotics and antimotility agents are contraindicated
Enterohemorrhagic E. coli (EHEC): Virulence Factors (8)
T3SS (LEE pathogenicity island)
TIR: T3SS secreted protein delivered to epithelial cell surface for E. coli attachment
INTIMIN: Tir binding protein on E. coli surface
–Facilitates strong attachment
SHIGA-LIKE TOXIN (STX): gene on phage, disrupts euk. protein synthesis (cytotoxic) via RNA cleavage (subunit A), binds to cell (subunit B)
HEMOLYSIN: pore forming protein
Capsule (K-antigen)
LPS
Common pilus
Enteroinvasive E. coli (EIEC): Diagnosis (1)
PCR for virulence genes
Enteroinvasive E. coli (EIEC): Disease (1)
Diarrhea
Enteroinvasive E. coli (EIEC): Epidemiology (1)
Less common in industrialized nations
Enteroinvasive E. coli (EIEC): Pathogenesis (3)
- attaches to cells of colon via non-fimbrial adhesins
- invades mucosal cells
- multiplies within cell but does not become systemic.
Enteroinvasive E. coli (EIEC): Similar to
Shigella dysentery
Enteroinvasive E. coli (EIEC): Special Features: Intra vs extracellular, presence of capsule, invasive or not
Highly invasive
Enteroinvasive E. coli (EIEC): Symptoms (1)
Watery diarrhea that can contain blood and mucus (similar to Shigella)
Enteroinvasive E. coli (EIEC): Transmission/vector/habitat (1)
Food
Enteroinvasive E. coli (EIEC): Virulence Factors (2)
Plasmid encoded genes for invasion, replication, and survival (similar to Shigella)
Attaches via non-fimbrial adhesins
Enteropathogenic E. coli (EPEC): Diagnosis (2)
PCR for virulence genes
Tissue culture -> localized adherence
Enteropathogenic E. coli (EPEC): Disease (1)
Childhood Diarrhea
Enteropathogenic E. coli (EPEC): Epidemiology (1)
Leading cause of childhood diarrhea (developing countries)
Enteropathogenic E. coli (EPEC): Pathogenesis
Localized adherence by bundle-forming pili -> A/E lesions -> malabsorption -> diarrhea
Enteropathogenic E. coli (EPEC): Symptoms
Diarrhea
Enteropathogenic E. coli (EPEC): Transmission/vector/habitat
Person-to-person
Enteropathogenic E. coli (EPEC): Treatment
Antibiotics guided by susceptibility testing for severe or protracted cases
Enteropathogenic E. coli (EPEC): Virulence Factors (3)
Attaching/Effacing (A/E) lesions
Bundle-forming pili (Bfp)
NO toxins
Enterotoxigenic E. coli (ETEC): At Risk (2)
Travelers, infants in developing countries
Enterotoxigenic E. coli (ETEC): Diagnosis (1)
PCR for virulence genes
Enterotoxigenic E. coli (ETEC): Disease
Traveler’s Diarrhea
Enterotoxigenic E. coli (ETEC): Pathogenesis (3)
- fimbriae adhere to receptors on enterocytes in SI
- net loss of fluid and electrolytes into lumen of gut (LT/ST)
- watery diarrhea (LT/ST)
Enterotoxigenic E. coli (ETEC): Symptoms
Watery diarrhea
Enterotoxigenic E. coli (ETEC): Transmission/vector/ habitat (2)
Food/water
Person-to-person
Enterotoxigenic E. coli (ETEC): Treatment
Loperamide (+fluoroquinolone)
Azithromycin or rifaximin (for travelers)
Enterotoxigenic E. coli (ETEC): Virulence Factors (2)
Heat-labile toxin (LT): targets adenylate cyclase => increased cAMP levels => excess Cl- secretion and blocked Na+ uptake
Heat-stable toxin (ST): alters cGMP levels -> same effects as LT
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): At Risk (3)
6-12 months of age (no more passive immunity)
Complement deficiencies
Developing countries
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Diagnosis (5)
History, age of patient
Blood and CSF culture in chocolate agar (will NOT grow on blood agar)
Gm stain CSF
Presence of Type B capsular Ag or PCR detection of capsule genes
Biochemical tests
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Disease (~8)
Start as nasopharyngitis (+ otitis media, sinusitis)
Meningitis
Bacteremia
Epiglottitis (less comon) and obstructive laryngitis (may be fatal within 24h)
Cellulitis (face) or childhood pyarthrosis (pus in joint)
Pneumonia
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Epidemiology (2)
Most common encapsulated strain (type B, most virulent) -> decreasing with vaccination
Previously most common cause of bacterial meningitis in children (<4y)
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Gram stain
-
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Oxygen
fac. Anaerobe
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Pathogenesis (4)
- respiratory aerosols
- colonization (weeks to months)
- IgA protease (may aid in immune evasion)
- LPS -> systemic infections
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Positive for: (3)
Urease
Ornithine decarboxylase
Indole production
(maybe not important)
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Prevention (1)
Prophylaxis in households with young children
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Reservoir
Carried by 75-80% of the population (5% are encapsulated)
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Shape
coccobacilli (pleiomorphic)
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Special Features: Intra vs extracellular, presence of capsule, invasive or not
Capsule present!
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Special growth conditions (4)
FASTIDIOUS -> MUST use chocolate agar
2 growth factors required (X & V)
- -X (heat stable): hemin
- -V (heat labile): NAD or NADP
Susceptible to disinfectants and drying
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Transmission/vector/habitat
Aerosol
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Treatment (4)
Meningitis:
- -3G cephalosporin immediately
- -Ampicillin/B-lactamase inhibitor if sensitive
- -Add steroids to reduce damage from inflammation
Contacts: rifampin for prophylaxis
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Vaccine
Conjugate capsular (effective) - capsule PRP linked to diphtheria toxoid for increased T-cell dependence => more immunogenic in children
Haemophilus influenzae (type B and other encapsulated, typeable, systemic): Virulence Factors (4)
Capsule (antiphagocytic - ribose for Type B vs hexose for others)
IgA protease
LPS
Adhesins
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): At Risk (3)
COPD, chronic bronchitis, CF -> respiratory disease
Acute sinusitis or CSF leak -> meningitis
Children
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Diagnosis (4)
History, age of patient
Blood and CSF culture in chocolate agar (will NOT grow on blood agar)
Gm stain CSF
Biochemical tests
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Disease (3)
Otitis media
Conjunctivitis
Respiratory disease
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Epidemiology (3)
50% mortality in neonates
2nd most common cause of otitis media (after Streptococcus pneumoniae)
Most common in children
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Gram stain
-
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Number of serotypes
Many
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Oxygen
fac. Anaerobe
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Pathogenesis (2)
3 invasion routes (extra- and intracellular)
Can also form biofilms
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Prevention (1)
Passive immunity from mother only lasts few months
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Reservoir
Carried by 75-80% of the population (5% are encapsulated)
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Shape
coccobacilli
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Special Features: Intra vs extracellular, presence of capsule, invasive or not (3)
No polysaccharide capsule
Both extracellular and intracellular
Non-systemic
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Special growth conditions (4)
FASTIDIOUS -> MUST use chocolate agar
2 growth factors required (X & V)
- -X (heat stable): hemin
- -V (heat labile): NAD or NADP
Susceptible to disinfectants and drying
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Symptoms (1)
Ear aches
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Transmission/vector/habitat
Aerosol
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Treatment (3)
Amoxicillin (otitis media & sinusitis)
Amox w/b-lactamase inhibitor for resistant strains
Can be persistent/recurrent due to biofilm formation and ability to invade cells
Haemophilus influenzae (unencapsulated, nontypeable, nonsystemic): Virulence Factors (2)
Adhesins -> colonization
LPS
Helicobacter pylori: Diagnosis (6)
Radiolabled urea test (Breath test) Stool culture (campy-BAP with cephalothin [special media]) Rapid urease test Seroconversion PCR
Endoscopy + histology (biopsy) -> definitive
Helicobacter pylori: Disease (3)
Peptic ulcer
Chronic Gastritis
Gastric cancer
Helicobacter pylori: Epidemiology (1)
Present in 50% of world’s population (highest in developing countries - correlates with greater incidence of gastric cancer)
Helicobacter pylori: Gram stain
-
Helicobacter pylori: Infectious dose
ND in humans
10^4 in primates
Helicobacter pylori: Oxygen
Microaerophilic
Helicobacter pylori: Pathogenesis (3)
- lives in stomach and duodenum mucus -> secretes urease (creates basic environment)
- immune cells can’t penetrate mucus -> release superoxide radical upon death => destroy stomach cells
- gastritis (days), ulcer (later), metaplasia, cancer
Helicobacter pylori: Positive for: (1)
Urease (breath test or stool culture)
Helicobacter pylori: Shape
spiral
Helicobacter pylori: Symptoms (2)
Recurrent pain in upper abd., GI bleed
Helicobacter pylori: Transmission/vector/habitat (2)
Fecal matter present in tainted food/water
Stomach-to-mouth by gastro-esophageal reflux (gastritis) => kissing
Helicobacter pylori: Treatment (2)
Antibiotic treatment [metronidazole, tetracycline] supplemented with bismuth salts (relapses require further treatment)
Contra-indicated for asymptomatic infected except in special circumstances
Helicobacter pylori: Virulence Factors (3)
–BabA (adhesin - binds to Lewis b Ag on surface of stomach epithelial cell)
–CagA (injected into stomach epithelial cell -> phosphorylated -> disrupts cytoskeleton, adherence to adjacent cells, intracellular signaling, cell polarity)
–VacA (injected - further damages epithelial cell lining)
Klebsiella pneumoniae: At Risk (3)
Alcoholic, diabetic, lung disease
Klebsiella pneumoniae: Diagnosis (1)
Capsule production causes mucoid colony morphology
Klebsiella pneumoniae: Disease (5)
OPPORTUNIST! UTI Bacteremia Meningitis Diarrhea Pneumonia
Klebsiella pneumoniae: Gram stain
-
Klebsiella pneumoniae: Oxygen
fac. Anaerobe
Klebsiella pneumoniae: Positive for: (1)
Lactose
Klebsiella pneumoniae: Shape
rod
Klebsiella pneumoniae: Special Features: Intra vs extracellular, presence of capsule, invasive or not (1)
Red currant jelly sputum
Klebsiella pneumoniae: Virulence Factors (1)
Capsule toxins (reduced phagocytosis, reduced complement activity)
Legionella pneumoophila: At Risk (3)
Renal transplant, immunocompromised, and elderly
Legionella pneumoophila: Diagnosis (4)
Culture on charcoal yeast extract with Fe and cysteine
Direct fluorescent Ab test in sputum
Detection of Ag in urine
Analysis of Ab levels in blood samples obtained 3-6w apart (for epigenetics)
Legionella pneumoophila: Disease (2)
Legionnaires’ disease
Milder form called “Pontiac Fever”
Legionella pneumoophila: Epidemiology (3)
Significant mortality in original outbreak
Most infections clinically insignificant
Summer/fall outbreaks (increased AC use)
Legionella pneumoophila: Gram stain
-
Legionella pneumoophila: Incubation Period
2-10 days
Legionella pneumoophila: Oxygen
Aerobe
Legionella pneumoophila: Pathogenesis (3)
Early infection: apoptosis in macrophages/alveolar cells
Second phase: necrosis
–Both processes lead to cell deah in respiratory tract
Rare dissemination -> systemic disease
Legionella pneumoophila: Prevention
Proper water handling (heating, chlorine, cleanings)
Legionella pneumoophila: Reservoir
Water of cooling towers, in amoeba or as biofilms
Legionella pneumoophila: Shape
rod
pleomorphic
Legionella pneumoophila: Special Features: Intra vs extracellular, presence of capsule, invasive or not (1)
Intracellular growth
Legionella pneumoophila: Special growth conditions (1)
Nutritionally “fastidious”: grown on charcoal yeast extract with Fe and cysteine
Legionella pneumoophila: Symptoms (8)
Atypical (diffuse) pneumonia: fever, chills, cough (+/- sputum), muscle aches, headache, tiredness, loss of appetite, and occasionally diarrhea
Legionella pneumoophila: Transmission/vector/habitat
Airborne from environment
NO human-to-human transmission
Legionella pneumoophila: Virulence Factors (1)
LPS
Mycoplasma pneumoniae: At Risk (4)
School-aged kids and teens through young adults
Childhood asthma, chronic lung disease, immunodeficiency
Mycoplasma pneumoniae: Diagnosis (4)
Sputum gram stain (+monocytes/PMNs) shows no organism
NO CULTURE generally attempted - Throat swab can take 3w (slow growth)
PCR (early results)
**Cold agglutination test (may be + in 50% of patients)
Mycoplasma pneumoniae: Disease (2)
Atypical (diffuse) pneumonia (gradual onset)
Extrapulmonary infections can occur (CNS, arthritis, autoimmunity) as complication
Mycoplasma pneumoniae: Epidemiology (5)
Causes 15-50% of pneumonias (50% of summer pneumonias)
Severity correlated with age
Epidemics every 4-8y
Close contact is a factor
Fatalities are rare
Mycoplasma pneumoniae: Gram stain
variable (no cell wall)
Mycoplasma pneumoniae: Number of serotypes
1 serotype, but NO lifelong immunity
Mycoplasma pneumoniae: Other
Have other mycoplasmas, often opportunists
Mycoplasma pneumoniae: Pathogenesis (2)
- attaches to epithelium via adhesins (P1) inducing ciliostasis => necrosis
- H2O2 production => oxidative damage and inflammation
Mycoplasma pneumoniae: Reservoir
NONE - only infects humans
Mycoplasma pneumoniae: Shape
pleomorphic (NO cell wall)
Smallest replicating bacterium
Mycoplasma pneumoniae: Special growth conditions (2)
Colonies are small and grow slowly -> fried egg appearance
Needs cholesterol for membrane rigidity
Mycoplasma pneumoniae: Symptoms (4)
Cough (sputum), weakness, fever, headache
Mycoplasma pneumoniae: Transmission/vector/ habitat
Aerosol
Mycoplasma pneumoniae: Treatment (2)
***Resistant to cell wall inhibitors
Sensitive to antibiotics that interfere w/protein synthesis (erythromycin and tetracyclines)
Mycoplasma pneumoniae: Virulence Factors (4)
Lipoproteins (increase immune evasion and provide rigidity)
P1 adhesin: protein complex at tip of bacterium
H2O2, superoxide: damage host cell membranes, disrupt DNA synthesis & metabolism, -> CILIOSTASIS
Neisseria (general): Gram stain
-
Neisseria (general): Positive for: (2)
Oxidase
Glucose (and maltose for N.m.)
**Non-pathogenic Neisseria ferment ALL sugars except sucrose
Neisseria (general): Reservoir
Humans only
Neisseria (general): Shape
diplococci (adjacent sides slightly flattened)
THE ONLY Gm- coccus pathogen!
Neisseria (general): Special growth conditions (4)
FASTIDIOUS
Grow in 5-10% CO2
Need Thayer-Martin selective medium (modified chocolate agar)
Readily killed by drying, heat, disinfectants
Neisseria (general): Virulence Factors (4)
Pili and OMP (colonization)
IgA1 protease
LOS (LPS w/out O side chains) helps resist serum bactericidal activity
Neisseria gonorrhoeae: Diagnosis (4)
Gm- stain of purulent exudate (pus)
Present in phagocytic cells
History of exposure
Oxidase-positive Gm- diplococci cultured
Neisseria gonorrhoeae: Disease (4)
Gonorrhea
Opthalmia neonatorum
Disseminated complications:
- Arthritis-dematitis syndrome
- Chronic pelvic inflammatory disease (PID; females)
Neisseria gonorrhoeae: Epidemiology (4)
Most prevalent communicable bacterial disease of humans (along w/C. trachomatis)
Worldwide pandemic
Asymptomatic carrier states are common
Opthalmia neonaturium was once the cause of 50% of blindness in children
Neisseria gonorrhoeae: Incubation Period
1 hour
Neisseria gonorrhoeae: Negative for: (3)
Maltose
Lactose
Sucrose
Neisseria gonorrhoeae: Number of serotypes
100+ serotypes based on antigenicity of pilus protein
Displays ANTIGENIC VARIATION: rearranges pilus genes to express different pili, evade immune system
Neisseria gonorrhoeae: Pathogenesis (4)
- STD via genital contact
- pili anchor to epithelium and impair phagocytosis by PMNs
- penetrate through surface cells (intracellularly) to reach sub-epithelial CT
- inflammation and yellow purulent urethral discharge
Neisseria gonorrhoeae: Positive for: (2)
Oxidase Glucose (G = gonorrhoeae)
Neisseria gonorrhoeae: Symptoms (3)
Inflammation, yellow purulent urethral discharge (w/pain upon urination)
Males: 2-3 days post-exposure
Females: 10 days (high percentage remain asymptomatic)
Neisseria gonorrhoeae: Transmission/vector/habitat (4)
STD: direct genital contact, rectal and pharyngeal mucosa, conjunctiva of newborns
Neisseria gonorrhoeae: Treatment (3)
IM ceftriaxone + oral tetracycline
Silver nitrate or tet/erythromycin ointment to prevent blindness in newborns
High levels of drug resistance
Neisseria gonorrhoeae: Virulence Factors (4)
Pili, OMP
IgA protease
LOS (but not a major factor in disease state, unlike meningococcus)
NO capsule
Neisseria meningitidis: At Risk (3)
Crowded conditions: day care centers, military barracks, college dorms
Sub-Saharan meningitis belt (type A) during dry season (Dec-June)
Children 65
Neisseria meningitidis: Diagnosis (4)
History: URI -> meningitis
**PETECHIAE on skin
Culture/agglutination for capsule Ag in CSF
Blood, CSF (lumbar puncture), nasopharyngeal specimens cultured for G- diplococci
Neisseria meningitidis: Disease (4)
Meningitis (high mortality; usually type B) Septicemia Mild pharyngitis (in some)
Severe = Waterhouse-Friderichsen (adrenal failure, shock, death)
Neisseria meningitidis: Epidemiology (3)
Carrier rate varies (5% gen. pop but higher in households with history)
–Carrier state lasts from days to months
Cases usually sporadic
Neisseria meningitidis: Incubation Period
Days to 1 week
Neisseria meningitidis: Negative for: (2)
Lactose
Sucrose
Neisseria meningitidis: Number of serotypes
Serogroups A, B, C, Y, W135 (most important) - based on capsule
Neisseria meningitidis: Pathogenesis (4)
Muliplies outside of cells, NOT inside
Endotoxin damages small vessels
Bacteria enter blood stream
Organotropism for meninges (but also skin, eyes and lungs)
Neisseria meningitidis: Positive for: (3)
Oxidase
Glucose
Maltose (M = meningitidis)
Neisseria meningitidis: Special Features: Intra vs extracellular, presence of capsule, invasive or not (2)
Encapsulated (antiphagocytic)
Extracellular
Neisseria meningitidis: Symptoms (9)
Meningitis: high fever, vomiting, stiff neck, lethargy, petechial rash
Septicemia: fever, petechial rash, hypotension, WF syndrome
Neisseria meningitidis: Transmission/vector/ habitat
Lives in nasopharynx, person-to-person aerosol
Neisseria meningitidis: Treatment (2)
Prompt IV penicillin, 3G cephalosporin, ciprofloxacin
Prophylactic rifampicin or cipro for close contacts
Neisseria meningitidis: Vaccine
Military and Endemic:
Quadrivalent vaccine for serotypes A, C, Y, and W…(no component for B capsule - sialic acid in capsule)
Africa:
Conjugate vaccine, cheap
Neisseria meningitidis: Virulence Factors (5)
Capsule
LOS
pili, OMP
IgA protease
Proteus mirabilis, vulgaris: Diagnosis (1)
Dx with urease test -> alkaline products turn phenol red red (vs yellow with net acid)
Proteus mirabilis, vulgaris: Disease (1)
OPPORTUNIST!
UTI
Proteus mirabilis, vulgaris: Epidemiology (1)
Frequent cause of UTI
Proteus mirabilis, vulgaris: Gram stain
-
Proteus mirabilis, vulgaris: Negative for: (1)
Lactose
Proteus mirabilis, vulgaris: Oxygen
fac. Anaerobe
Proteus mirabilis, vulgaris: Pathogenesis
Urea -[urease]-> NH3 + CO2 -> ALKALINE urine -> salt crystalization and stone formation -> chronic infection
Proteus mirabilis, vulgaris: Positive for: (1)
Urease
Proteus mirabilis, vulgaris: Shape
rod
Proteus mirabilis, vulgaris: Virulence Factors (2)
Flagella (swarming motility), urease
Pseudomonas aeruginosa: At Risk (3)
Immunocompromised (bacteremia)
COPD and CF (chronic lung infection)
Pseudomonas aeruginosa: Diagnosis
**Obligate aerobe, no fermentation of sugar
Pseudomonas aeruginosa: Disease (5)
OPPORTUNIST!
Bacteremia
Pneumonia
Infections of burns, eyes, wounds
Pseudomonas aeruginosa: Epidemiology (1)
Associated with burns, catheters, implants, ventilator associated pneumonia, implants, eye wounds
Pseudomonas aeruginosa: Gram stain
-
Pseudomonas aeruginosa: Negative for: (1)
Sugar fermentation
Pseudomonas aeruginosa: Oxygen
obligate aerobe (because it does NOT ferment, but technically wrong)
Pseudomonas aeruginosa: Pathogenesis (2)
Elastase breaks down elastin (lung tissue damage)
Phospholipase breaks down phospholipids in host cell membranes and surfactant
Pseudomonas aeruginosa: Shape
rod
Pseudomonas aeruginosa: Virulence Factors (8)
Endotoxin
Exotoxins (elastase, phospholipase)
T3SS-secreted toxins (ExoA, S, T, U)
Pyocyanin (blue-green pigment, generates ROS)
Rickettsia (general): Diagnosis (3)
Clinical symptoms/history
PCR test
Specific immunohistologic detection of Rickettsiae
Rickettsia (general): Gram stain
-
Rickettsia (general): Life Cycle (3)
Growth cycle in human/arthropod cells
- enter via phagocytosis (promoted by rickettsia and requires energy) even into non-phagocytic cells
- multiply slowly (binary fission - 1x/day)
- progeny released via lysis
Rickettsia (general): Shape
pleomorphic
Rickettsia (general): Special growth conditions (1)
OBLIGATE intracellular (unclear why: they’re well adapted to intracellular environment but are able to make own ATP)
Rickettsia (general): Transmission/vector/habitat
Arthropods
Rickettsia (general): Treatment (1)
Tetracyclines
Rickettsia akari: At Risk (1)
Exposure to rodents
Rickettsia akari: Disease (1)
Rickettsial Pox
Rickettsia akari: Epidemiology (1)
Outbreaks usually confined to single, large apartment buildings
Rickettsia akari: Reservoir
Mouse
Rickettsia akari: Symptoms (3)
- primary skin lesion (site of bite)
- systemic disease 1 week later (fever, chills, headache, rash like chicken pox)
- -Benign, non-life-threatening
Rickettsia akari: Transmission/vector/ habitat
Mouse -> mouse mite -> human
Rickettsia prowazekii: At Risk (3)
Human misery, famine, and war
Rickettsia prowazekii: Diagnosis (4)
PCR detection
Various serological tests
Elevated LFT
Rise in antibody titers (compare acute and convalescent serum samples)
Rickettsia prowazekii: Disease (2)
Primary Epidemic Typhus
Endemic Typhus
Brill-Zinsser disease
Rickettsia prowazekii: Epidemiology (2)
Brill-Zinsser disease (reactivation of latent infection) may reintroduce rickettsia (Russia or eastern Europe)
Often fatal if untreated (except in children)
Rickettsia prowazekii: Incubation Period
10 days
Rickettsia prowazekii: Pathogenesis (6)
- louse punctures skin to get blood meal - defacates
- scratching drives feces (+rickettsia) into wound
- multiply first in capillary endothelial cells
- incubate
- sudden onset of fever and headache
- rash (4-7d later)
Rickettsia prowazekii: Prevention
Louse control (DDT or adequate bath and laundry facilities)
Rickettsia prowazekii: Reservoir
Flying squirrel and its lice
Rickettsia prowazekii: Symptoms (5)
Abrupt fever, severe intractable headache, rash, elevated liver enzymes
Frequently fatal
Rickettsia prowazekii: Transmission/vector/ habitat (2)
Primary Epidemic
Human “body” lice (NOT head/crab lice)
Endemic
Flying squirrel lice
Rickettsia rickettsii: At Risk (2)
Eastern USA
Exposure to ticks
Rickettsia rickettsii: Disease
Rocky Mountain Spotted Fever
Rickettsia rickettsii: Epidemiology (2)
Untreated adult cases have 20% mortality
Mostly cases from April to November
Rickettsia rickettsii: Incubation Period
<1 week
Rickettsia rickettsii: Prevention (1)
Avoid ticks (wear suitable clothing)
Rickettsia rickettsii: Reservoir (2)
Western USA: forest tick
Easten USA: dog tick
Rickettsia rickettsii: Symptoms (3)
- Fever, headache, arthritic pains, abd. pain with nausea and vomiting
- Rash from extremities spreads to trunk
- Lesions on palm of hand and soles of feet
Rickettsia rickettsii: Transmission/vector/ habitat (2)
Transovarian -> tick -> human
Mammal -> tick -> human
Rickettsia typhi: At Risk (2)
Exposure to rats and squirrels
Rickettsia typhi: Disease (1)
Endemic Murine Typhus
Rickettsia typhi: Reservoir (2)
Rats and ground squirrels
Rickettsia typhi: Symptoms (1)
Resembles primary epidemic typhus but milder and less fatal
Rickettsia typhi: Transmission/vector/ habitat
Rat/ground squirrel flea -> human
Salmonella (general): Diagnosis (3)
ID with MacConkey/EMB for lac -
Produces H2S - BLACK on Klinger Iron Agar
Serotyping and PCR tests w/ O & H antigens allows species identification
Salmonella (general): Gram stain
-
Salmonella (general): Infectious dose
10^3-10^5
Salmonella (general): Negative for: (5)
Lactose Oxidase Spores Indole Urease
Salmonella (general): Oxygen
fac. Anaerobe
Salmonella (general): Positive for: (5)
Glucose (+gas) Motility (flagella) H2S (black precipitate) Nitrate reduction O & H antigen
Salmonella (general): Shape
rod
Salmonella choleraesius: At Risk (6)
Young, malaria, immune dysfunction, steroid use, sickle cell, cancer
Salmonella choleraesius: Diagnosis (1)
Isolation in blood
Salmonella choleraesius: Disease (1)
Septicemia
Salmonella choleraesius: Epidemiology (1)
Rare
Salmonella choleraesius: Incubation Period
6-72 hours
Salmonella choleraesius: Infectious dose
10^3
Salmonella choleraesius: Number of serotypes
1 serotype
Salmonella choleraesius: Reservoir
Swine
Salmonella choleraesius: Symptoms (4)
High fever and bacteremia after onset of gastroenteritis
Microabscesses can develop anywhere
Salmonella choleraesius: Transmission/vector/ habitat
Contaminated food
Salmonella choleraesius: Treatment
Appropriate antibiotics
Salmonella choleraesius: Virulence Factors (3)
SPI-1 (invasion, encodes T3SS)
SPI-2 (survival, encodes T3SS)
LPS (endotoxin)
Salmonella enteritidis and typhimurium: At Risk (1)
Both developed and developing countries
Salmonella enteritidis and typhimurium: Diagnosis (1)
Isolation in feces
Salmonella enteritidis and typhimurium: Disease (1)
Acute gastroenteritis
Salmonella enteritidis and typhimurium: Epidemiology (4)
Most common Salmonella infection in US
Self-limiting
Complications can arise
Death is uncommon
Salmonella enteritidis and typhimurium: Incubation Period
8-48 hours
Salmonella enteritidis and typhimurium: Infectious dose
10^3-10^5
Salmonella enteritidis and typhimurium: Number of serotypes
2200 serotypes
Salmonella enteritidis and typhimurium: Pathogenesis (3)
LPS release during epithelial cell (intestines) invasion - symptomatic
T3SS mediated invasion
Extracellular cells produce toxins (pertussis-like) - promote inflammation and secretion
Salmonella enteritidis and typhimurium: Reservoir
Reptiles and poultry
Salmonella enteritidis and typhimurium: Symptoms (6)
Lasts 1-4 days
Headache, chills, abd. pain, vomiting, diarrhea w/fever
Salmonella enteritidis and typhimurium: Transmission/vector/ habitat (4)
Poultry, eggs (common), food, water
Salmonella enteritidis and typhimurium: Treatment (2)
Fluid and electrolyte replacement
Treat patients with predisposing conditions with antibiotics [amp, sulfa, 3G ceph, cipro; resistance is possible]
Salmonella enteritidis and typhimurium: Virulence Factors (3)
T3SS, LPS, pertussis-like toxin
Salmonella typhi: At Risk (1)
Developing world
Salmonella typhi: Diagnosis (3)
Wk1: subclinical, +stool
W2-3: +blood, symptomatic
W3: +stool, gall bladder colonized
Salmonella typhi: Disease (1)
Enteric (Typhoid) Fever
Salmonella typhi: Incubation Period
7-14 days
Salmonella typhi: Infectious dose
High (~10^5)
Salmonella typhi: Number of serotypes
1 serotype
Salmonella typhi: Pathogenesis (9)
- survives stomach
- adhesins attach to intestinal epithelium
- endocytosis (invasion of Peyer’s patches)
- ingestion by macrophages (T3SS)
- survive inside vacuoles (Vi)
- kill macrophage and disseminate via thoracic duct to blood, liver, spleen, gall bladder
- fever/shock via LPS
- reinvade GI via gall bladder
- GI bleed and sometimes diarrhea
Salmonella typhi: Prevention (4)
Control of water/sewage
Food safety
Pastuerization
Carrier screening
Salmonella typhi: Reservoir
NONE - only infects humans
Salmonella typhi: Special Features: Intra vs extracellular, presence of capsule, invasive or not (2)
Vi antigen, fac. intracellular pathogen
Salmonella typhi: Symptoms (6)
Early GI phase (incubation): may be subclinical w/+stool
Bacteremic: episodic fever, bradycardia, skin rash (Rose spot), leukopenia, enlarged liver/spleen
Late GI: intestinal hemorrhage or perforation
Chronic (3%): hide in gallbladder
Salmonella typhi: Transmission/vector/ habitat
Contaminated food/water
Salmonella typhi: Treatment (4)
Fluoroquinolones or 3G cephalosporins
–Should penetrate tissue –> macrophages
Chronic carrier states (3%) (gallbladder):
- Ampicillin or Cipro
- Cholecystectomy
Salmonella typhi: Vaccine
- Ty21a - oral attenuated
2. ViCPS - Vi capsular polysaccharide
Salmonella typhi: Virulence Factors (3)
SPI-1 (invasion, encodes T3SS)
SPI-2 (survival, encodes T3SS)
LPS (endotoxin)
Serratia marcescens: At Risk (3)
Infection secondary to broad spectrum antibiotic treatment or instrumentation
Heroin addicts
Serratia marcescens: Disease (3)
OPPORTUNIST!
Pneumonia (after use of a contaminated respirator)
Joint/tissue infections
Serratia marcescens: Gram stain
-
Serratia marcescens: Negative for: (1)
Lactose
Serratia marcescens: Oxygen
fac. Anaerobe
Serratia marcescens: Shape
rod
Serratia marcescens: Special Features: Intra vs extracellular, presence of capsule, invasive or not (1)
Prodigiosins (red pigment)
Serratia marcescens: Transmission/vector/ habitat (2)
Loves to grow in water
GI tract in neonates
Serratia marcescens: Virulence Factors (4)
MS-fimbriae
proteases
siderophores
swarming motility (colonization)
Shigella (dysenteriae, flexneri, boydii, sonnei): At Risk
Children <10y
Also infects adults
Shigella (dysenteriae, flexneri, boydii, sonnei): Diagnosis (4)
Can detect organisms in feces up to 1-4w after recovery -> important for spread
Detect PMN (indicative of invasive process)
Immunochromatographic assay for Shiga toxin
Kliger Iron Agar (+ glucose fermentation)
Shigella (dysenteriae, flexneri, boydii, sonnei): Disease (1)
Dysentery (shigellosis/bloody diarrhea)
Shigella (dysenteriae, flexneri, boydii, sonnei): Epidemiology (5)
Self-limiting, rarely fatal
Dysenteriae: most common species in developing world
Flexneri: common (18%) in US and developing countries
Sonnei: most common species in US (75%)
Bodyii: common in Indian subcontinent
Shigella (dysenteriae, flexneri, boydii, sonnei): Gram stain
-
Shigella (dysenteriae, flexneri, boydii, sonnei): Incubation Period
1-4 days
Shigella (dysenteriae, flexneri, boydii, sonnei): Infectious dose
Low inoculum (<100)
Shigella (dysenteriae, flexneri, boydii, sonnei): Negative for: (6)
Lactose H2S Non-motile Indole Urease H antigen
Shigella (dysenteriae, flexneri, boydii, sonnei): Oxygen
fac. Anaerobe
Shigella (dysenteriae, flexneri, boydii, sonnei): Pathogenesis (7)
- acid tolerant
- invade intestinal cells (lower ileum and colon)
- uptake by macrophages into vacuoles (T3SS)
- escape from vacuole into cytoplasm -> cell-to-cell spread (T3SS)
- apoptosis of macrophage -> re-infection
- IL-1 and TNF from macrophage leads to fever and systemic symptoms
- bloody diarrhea + apoptosis of mucosal cells + ulceration (Shiga toxin)
Shigella (dysenteriae, flexneri, boydii, sonnei): Positive for: (2)
Glucose (-gas)
O antigen
Shigella (dysenteriae, flexneri, boydii, sonnei): Prevention (1)
Sanitation
Shigella (dysenteriae, flexneri, boydii, sonnei): Reservoir
NONE - only infects humans
Shigella (dysenteriae, flexneri, boydii, sonnei): Shape
rod
Shigella (dysenteriae, flexneri, boydii, sonnei): Similar to (2)
Salmonella, E coli (Enterobacteriaceae Family)
Shigella (dysenteriae, flexneri, boydii, sonnei): Special Features: Intra vs extracellular, presence of capsule, invasive or not
Fac. intracellular pathogen
Shigella (dysenteriae, flexneri, boydii, sonnei): Symptoms (6)
Fever (LPS) Diarrhea, abd. cramps (Shiga toxin) Bloody diarrhea w/mucus Bacteremia (rare) HUS (rare)
Shigella (dysenteriae, flexneri, boydii, sonnei): Transmission/vector/ habitat
4F’s: food, fingers, feces, flies
Shigella (dysenteriae, flexneri, boydii, sonnei): Treatment (2)
Fluid and electrolyte replacement therapy (esp. young children)
Antibiotics in severe cases - increasing resistance
Shigella (dysenteriae, flexneri, boydii, sonnei): Vaccine
Live attenuated vaccine not effective
Not-yet approved O-antigen conjugated to inactivated shiga toxin
Shigella (dysenteriae, flexneri, boydii, sonnei): Virulence Factors (3)
T3SS (for uptake by/escape from MOs)
LPS
Shiga toxin (exotoxin)
–A subunit: interferes w/60S rRNA function
–B subunit: Binds to receptor on intestinal cells
Uropathogenic E. coli (UPEC): At Risk (2)
Women via sex (bacterial flora in short urethra) and catheters
Uropathogenic E. coli (UPEC): Diagnosis (3)
> 10^5 bacteria/ml in urine
Hemagglutination with sensitivity (Type I pili only, P are MR) to mannose testing
Uropathogenic E. coli (UPEC): Disease (3)
OPPORTUNIST!
UTI
Neonatal meningitis
Bacteremia
Uropathogenic E. coli (UPEC): Epidemiology (4)
Most common cause of UTIs (95%)
–Reoccurrence is common
Most common neonatal pathogen (K1 - neonatal meningitis)
Major cause of bacteremia, including leading cause of nosocomial bacteremia
Uropathogenic E. coli (UPEC): Gram stain
-
Uropathogenic E. coli (UPEC): Number of serotypes
Few are pathogenic
Uropathogenic E. coli (UPEC): Oxygen
fac. Anaerobe
Uropathogenic E. coli (UPEC): Pathogenesis (2)
Bacteria + urethra + ascension -> UTI
UTI + blockage -> bacteremia
Uropathogenic E. coli (UPEC): Positive for: (1)
Lactose
Uropathogenic E. coli (UPEC): Shape
rod
Uropathogenic E. coli (UPEC): Similar to
Neisseria meningitidis (K1)
Uropathogenic E. coli (UPEC): Special Features: Intra vs extracellular, presence of capsule, invasive or not (2)
Replicate intracellularly (epithelial cells)
Serum resistance (evade Complement, correlated w/K1 production) is a critical trait of bacteremia causing strains
Uropathogenic E. coli (UPEC): Symptoms (7)
Cystitis (dysuria, freqency, urgency, and suprapubic tenderness - typically lower UTI)
Acute pyelonephritis (UTI disseminated to kidney - flank pain, tenderness, fever, dysuria, frequency, urgency)
Uropathogenic E. coli (UPEC): Transmission/vector/ habitat (2)
Catheters Sexual intercourse (spreads bacteria
Uropathogenic E. coli (UPEC): Treatment (2)
Self-limiting
Treat pyelonephritis with Abx
Uropathogenic E. coli (UPEC): Virulence Factors (8)
BACTEREMIA/MENINGITIS: LPS K1 capsule (polysialic acid, non-immunogenic, in bacteremia) motility Siderophores
UTI: Pili --Mannose-binding type 1 (cystitis) --P (pyelonephritis) Adhesins -> colonization Hemolysin Biofilm formation
Vibrio cholerae: At Risk (4)
Refugee camps
Poverty
Inadequate sanitation
South-central/southeast Asia
Vibrio cholerae: Diagnosis (1)
Yellow opaque colonies on TCBS medium (selective and differential for V. cholerae)
Vibrio cholerae: Disease (1)
Cholera
Vibrio cholerae: Epidemiology (1)
John Snow + Broad Street Pump
Vibrio cholerae: Gram stain
-
Vibrio cholerae: Infectious dose
Infectious dose is source dependent (contaminated rice is highly infectious)
100 to 10^9
Vibrio cholerae: Number of serotypes
> 250
O1 = epidemic cholera
- -Classical biotype = old cholera
- -El Tor biotype = current cholera
Vibrio cholerae: Oxygen
fac. Anaerobe
Vibrio cholerae: Pathogenesis (6)
- Inactivated by gastric acid, but some survive (rice helps)
- Enters small bowel, binds to epithelium
- (VF) Toxin Coregulated Pilus -> microcolony formation in intestinal crypts
- > **Organism remains in intestine and DOES NOT invade - (VF) Cholera toxin: expressed & secreted
- B subunit of CT binds ganglioside GM1 -> endocytosis
- —–(VF) Neuraminidase makes more GM1, increasing binding sites - A subunit is the TOXIN: ADP ribosylation of G protein on AC -> cAMP production -> PKA activation -> increased secretion of electrolytes and water, decreased NaCl absorption
Vibrio cholerae: Positive for: (1)
Motility (polar flagellum)
Vibrio cholerae: Prevention (3)
Water: bottle, carbonate, Cl, boil
Ice: beware
Food: dry, steaming hot, special attention to shellfish
Vibrio cholerae: Reservoir
NONE - only infects humans
Vibrio cholerae: Shape
comma with polar flagellum
Vibrio cholerae: Similar to (2)
Vibrio parahaemolyticus (invasive gastroenteritis - shellfish)
Vibrio vulnificus (wound infection - seawater/shellfish - underlying liver disorder)
Vibrio cholerae: Symptoms (4)
Painless, odorless profuse secretory diarrhea (rice water) -> rapid dehydration -> shock -> potential death
Vibrio cholerae: Transmission/vector/habitat
Contaminated H2O! shellfish, seafood
Vibrio cholerae: Treatment (3)
Oral/IV fluid replacement (electrolyte)
Antibiotics (reduce duration of diarrhea)
Doxycycline (adults) or azithromycin (children/pregnant)
Vibrio cholerae: Vaccine
NONE are highly effective
Inactivated: 2 oral doses (crude suspension, new killed whole cell)
70% effective, not recommended for travel, currently used in Haiti
Live-attenuated: effective in North American clinical trials but not in field
Vibrio cholerae: Virulence Factors (5)
O & H antigens Endotoxin Enterotoxin (cholera toxin) Toxin coregulated pilus (TCP) - colonization Neuraminidase