Ageing in C. elegans and the IIS Pathway Flashcards

1
Q

What provides evidence for the genetic component of ageing?

A

Some organisms, such as Hydra vulgaris and Urticina felina were non-ageing, and that even very similar organisms could have very different maximum lifespans, such as drosophila and Lasius niger ant queens (3 months and 28 years) or humans and chimps (110 and 60 respectively).

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2
Q

What does the understanding that genetic influences ageing allow for?

A

A classical genetic approach can be taken; isolating mutants with altered ageing rates and identifying the genes involved, so to gain an insight into the biochemical basis.

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3
Q

What four model organisms are used to study ageing?

A

Mice, drosophila, elegans and yeast.

The most useful and well-studied model organism for ageing is Caenorhabditis elegans.

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4
Q

How does elegans show ageing?

A

C. elegans shows ageing through increased protein oxidation, mitochondrial DNA deletions, build-up of lipofuscin, reduced feeding, fertility and movement and cuticular wrinkling due to collagen cross linking.

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5
Q

What advantages does elegans have as a model organism?

A

C. elegans is also a useful model organism in general; being a transparent microbiverous, 1.2mm nematode worm with a mapped 97Mbp genome containing 19,000 genes with many characterised and explained mutant strains available.

Only having a lifespan of 1-2 weeks allows for rapid results in experiments. The worm also has only males (X0) and hermaphrodites (XX). This worm has the added advantage of being very easy to modify using RNA-mediated RNA interference.

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6
Q

What ageing mutants are most useful for study?

A

It is generally the long lived mutants that are studied for ageing research, as those who are short lived are often just sick in other specific ways that explain little about ageing in the general population.

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7
Q

What makes elegans such a useful ageing model?

A

When the larva is exposed to harsh conditions at the L2 stage it can transform into a dauer; essentially going into ‘stasis’ in response to nutrient deficient or high temperature environments, or in response to a pheromone indicating an unsustainably high population.

The length of time spent as a dauer has no effect on the lifespan afterwards as the dauers- are ‘non-ageing’. Thus they possess a way to arrest the ageing process.

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8
Q

What is a dauer?

A

The dauer is a developmentally arrested form that does not eat, having sealed its buccal cavity, instead relying on its stored food granules. They are resistant to stresses, including from ROS, and have reduced movement (though can still move quickly if pressed to).

They will revive themselves when conditions become more favourable, but the dauer stage can only last for a maximum of 70 days.

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9
Q

What is it assumed that long lived elegans mutants possess?

A

When the C. elegans was first screened for long-lived mutants it was unsurprising that those found were involved in dauer formation, as dauers appear to be able to ‘stop the clock’ in terms of ageing; prolonging that effect is the assumed principle behind the identified mutants.

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10
Q

What was the first identified elegans long lived mutant?

A

Michael Klass was the first to identify long-lived mutants through a series of mutagenic experiments, but the work was largely disregarded due to disbelief that mutations could double the natural lifespan of an organism.

It was not until Tom Johnson showed that the gene had this effect regardless of calorie restriction and named it age-1 that it was accepted that a 65% increase in lifespan (and 110% increase in maximum lifespan) was solely due to mutation of the gene.

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11
Q

What are the two primary long lived mutants?

A

Age1 and daf-2.

Cynthia Kenyon discovered the daf-2 (dauer formation 2) gene, which showed doubled lifespan in mutants and affected dauer formation in C. elegans.

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12
Q

How are age-1 and daf-2 classified?

A

Both of these mutations, age-1 and daf-2, were classed as daf-c genes, as mutating these daf-c (constitutive) genes leads to formation of dauers when the conditions do not call for it, likewise genes can be daf-d (defective) when their mutation leaves the worm unable to form dauers.

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13
Q

What is the nature of the age-1 and daf-2 mutations?

A

Partial knockouts of daf-c genes (such as the age-1 and daf-2 mutants identified) are responsible for the increased lifespan, as unlike the total knockouts the dauers are not much more prone to form but the metabolic change is continuously effected.

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14
Q

What is the function of age-1 and daf-2? What does this imply?

A

The purpose of both the age-1 and daf-2 gene products is to inhibit the daf-16 gene product. It is through the inhibition of this inhibition that the longevity of their mutations is created.

Hence daf-16 is a longevity gene, possibly involved in activating the variety of metabolic changes that cause dauers not to age.

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15
Q

How do age-1/daf-2 mutations and daf-16 mutations interact?

A

Because the effect of age-1 and daf-2 is dependent upon daf-16, their mutation has no effect on daf-16 knockouts. Conversely, overexpression of daf-16 combined with mutation of age-1 and daf-2 can produce long-lived individuals.

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16
Q

What was the result of daf-16 tissue specificity experiments?

A

This was used to identify in which tissues the expression of daf-16 led to longevity. Double mutant knockouts for daf-2/daf-16 (no longevity) can be rescued to restore the longevity. By comparing the increase in longevity when the daf-16 is ‘rescued’ in specific tissues can be shown.

This partial rescuing of the longevity is only shown in the intestine, indicating that daf-16’s effecs in the intestine are responsible for the longevity.
This makes sense, as in C. elegans the ‘intestine’ is a large and complex organ that fills the roles of liver and adipose deposit as well as digestion.

17
Q

What are the daf-2, age-1 and daf-16 genes involved in?

A

Daf-2, age-1 and daf-16 are all part of the same pathway, one which is homologous to the human insulin/IGF signalling pathway.

18
Q

What genes do daf-2, age-1 and daf-16 correspond to?

A

Daf-2 corresponds to the insulin/IGF-1 cell surface receptor, age-1 the catalytic subunit of the phosphatidyl inositol 3-kinase and daf-16 the FOXO class forkhead transcription factor which is ultimately inhibited by activation of the signalling pathway.

19
Q

Given their pathway, how exactly does daf-2/age-1 knockout affect longevity?

A

Mutation of daf-2 and age-1 therefore increase longevity by preventing the inhibition by tri-phosphorylation of daf-16, which is effected by sequestration of the transcription factor in the cytoplasm.

When daf-2 is active the daf-16 is dispersed through the worm, but when knocked out the FOXO TF is localised to the nucleus.

20
Q

How do the longevity mutants in elegans translate to drosophila?

A

Similar longevity-increasing mutants were found in drosophila. Chico, an insulin receptor substrate, has
shown to increase lifespan by 48% when mutated.

There is also a daf-2 homologue present in drosophila – dINR (drosophila insulin receptor) – mutation at which also increases mean lifespan, by up to 85% in females.

Both also lead to dwarfism due to the downregulation of the IGF pathway.

Increased production of drosophila Insulin-like peptides (dILPs) also increases lifespan.

This shows a wide conservation of the role of IIS in ageing control, and may hint towards a link between growth and lifespan.

21
Q

What is the issue with studying elegans longevity mutant conservation in mammals?

A

Unlike in organisms such as elegans and drosophila which each have only one insulin/IGF receptor, mammals have many similar systems. We possess an insulin receptor, an IGF-1 receptor and even an insulin receptor-like receptor.

22
Q

What mouse IIS gene mutation showed longevity?

A

in 2003 it was found by Ron Kahn that tissue specific knockout of the insulin receptor in white adipose tissue in mice (FIRKO mice, Fat-specific Insulin Receptor Knockout) caused an 18% increase in mean lifespan.

Similarly, mice that are heterozygous, with one copy of their IR non-functional are resistant to oxidative stress and long lived (females have 33% increased mean lifespan), suggesting that IGF does promote ageing.

23
Q

What non IIS mouse gene mutation showed longevity?

A

The Prop-1 gene in mice produces a transcription factor necessary for proper development of the anterior pituitary gland. Mutations here knock out the somatotropic axis, which has multiple effects on the mouse including 70-90% mean lifespan increase. However the other effects are less positive; greatly reduced fertility, obesity and dwarfism.

24
Q

What did investigation into the effect of the somatotropic axis on ageing in humans reveal?

A

Unlike mice no such longevity can be identified in human mutants.

In 2011 a study was published in which 99 Ecuadorian GH-receptor deficient dwarves were monitored for 22 years. The study showed an interesting resistance to cancer, stroke and diabetes compared to their relatives, but were no longer lived due to increased risk of convulsive disorders, accidental death and alcohol related expiration.

25
Q

What are the two approaches by which a link between the IIS pathway longevity and ageing mechanics may be investigated?

A

A biased (AKA candidate) approach in which a link is searched for between the existing information and a theory of the biochemical process of ageing, or an unbiased one in which all the effects of the signalling pathway are examined to identify the one responsible.

26
Q

What is the Oxidative Damage Theory of Ageing? How can this be investigated in relation to the given evidence of longevity mutants?

A

One of the most enduring ideas about what causes ageing comes from is the one based around the accumulation of damage caused by reactive oxygen species (particularly superoxide, O2-) produced as a by-product by mitochondrial respiration.

Since the main defence against superoxide radicals are superoxide dismutase enzymes, it would make sense that their genes might be upregulated by the daf-16 signalling pathway.

27
Q

What SOD genes are present in elegans?

A

The worm has five SOD genes: two cytoplasmic Cu/Zn SODs (sod-1 and 5), two mitochondrial Mn SODs (2 and 3) and a cytoplasmic Cu/Zn SOD (sod 4) that does have an isozyme.

28
Q

What did mutation of elegans SOD genes show?

A

Although Daf-16 does upregulate SODs 1, 3 and 5, deletion of SOD genes has no effect on the lifespan of the worm when it is not exposed to endogenous oxidative stress. Their deletion only causes hypersensitivity to superoxide, as tested against paraquat and hyperoxic conditions.

Mutants with no mitochondrial SOD (which, as per the theory would be the most involved in longevity) show no change in lifespan, only in sensitivity, so mitochondrial superoxide levels do not contribute to C. elegans ageing.

29
Q

What did mutation of mouse SOD genes show?

A

This further corroborated the negative results seen in C. elegans, in an experiment that tested overexpression of various major antioxidant enzymes in mice and found no increase in lifespan.

Some researchers are of the opinion that this is the final nail in the coffin of the oxidative damage theory of ageing.