Acids, Bases, and Buffers (Intro) Flashcards
What charge does water have and why?
Water is a “polar” molecule, meaning that there is an uneven distribution of electron density. Water has a partial negative charge near the oxygen atom due the unshared pairs of electrons, and partial positive charges near the hydrogen atoms.
The ability of ions and other molecules to dissolve in water is due to
polarity
Unique physical properties due to hydrogen bonding
high heat of vaporization, strong surface tension, high specific heat, and nearly universal solvent properties of water
H+ in regards to acids and bases
Acids release H⁺, bases accept H⁺
Alcohol
hydrocarbon with a hydrogen replaced by “OH”
Acid
hydrocarbon with a hydrogen replaced by a carboxyl “COOH”.
COOH -> COO⁻ + H⁺
Amine
hydrocarbon with a hydrogen replaced by an amine “NH₂”. Basic- accepts protons. NH₂ + H⁺ -> NH₃⁺
Phosphate
addition of -PO₄⁼ (switch)
Amino Acid
hydrocarbon with amino and carboxyl groups
The pH of a solution indicates
how much acid (acidity) or base (alkalinity) exists in a solution
An acid is….
a substance that increases the concentration of hydrogen ions (H⁺) in a solution, usually by having one of its hydrogen atoms dissociate
A base…
provides either hydroxide ions (OH⁻) or other negatively charged ions that combine with hydrogen ions, reducing their concentration in the solution and thereby raising the pH. In cases where the base releases hydroxide ions, these ions bind to free hydrogen ions, generating new water molecules
The stronger the acid, the more readily it donates
H⁺
Strong bases are those substances that readily donate
OH⁻ or take up hydrogen ions
Buffers…
readily absorb excess H⁺ or OH⁻, keeping the pH of the body carefully maintained in the narrow range required for survival
Examples of buffers
carbonic acid (H₂CO₃), bicarbonate ion (HCO₃⁻), and carbon dioxide (CO₂)
Viruses
• Viruses are composed of nucleic acids covered by a proteinaceous coat. • They rely on the host cell to divide. They do not burn any fuels. • The DNA or RNA sequence changes over time in response to antivirals/human immune systems.
Evolution has been directly observed on…
short time scales
What do biologists study?
Biosphere: all environments inhabited by life
Ecosystems: All the living (biotic) and non-living (abiotic e.g. light, oxygen etc) components of an area
Communities: all organisms in an ecosystem
Populations: all individuals of a species
Organisms: individual living things
Organs and organ systems: carry out particular functions in the organism
Tissues: groups of similar cells; make up organs
Cells: fundamental unit of life, all organisms are made of cells
Organelles: components of cells
Molecules: chemical structure
Properties of water : polarity
- Oxygen is more electronegative
- Stronger pull on shared electrons
- Partial negative charge
- Hydrogen has a partial positive charge
Bond type and molecular shape
determine whether a molecule is polar or nonpolar
Hydrogen bonds…
stabilize biological molecules and allows them to perform their biological function
Water molecules have a ____ attraction to each other than to the air
higher
Solution
liquid that is a homogeneous mixture of
substances
Aqueous solution
solutes dissolved in the solvent water
Cations
(+ve ions)- attracted to oxygen of water
Anions
(-ve ions)- attracted to hydrogen of water
Concentration
number of solute molecules for a given volume of solvent
Presence of solutes \_\_\_\_\_\_ the freezing point of aqueous solutions (freezing point depression)
decreases
Freezing point of seawater (-1.8C) is ____ than
freshwater
lower
Some organisms ____ solutes in body fluids
to _____ freezing point
Some organisms increase solutes in body fluids
to lower freezing point
Equilibrium of water
- H atom in a H-bond between two water molecules can shift from one to the other: (rare but important)
- H₂O molecules dissociate at the same rate at which they are being reformed
- Rare but very important to biology
- Concentration of hydronium and hydroxides can vary over orders of magnitude
- Concentration of hydronium denoted as [H⁺]
Buffers contain….
Buffers contain a weak acid and corresponding base,
which combine reversibly with H⁺ ions
Acid ↔ Base + H⁺
An organelle is releasing protons into the cytoplasm. How will the buffers of the cytoplasm respond to this input?
Lowering pH