A2 Flashcards
Homeostasis
maintaining of a consistent internal environment even if the external environment changes
primordial soup
(hypothetical) water-based sea of simple monomers such as amino acids. This is thought to be the origin of living compounds
Vesicle
Any small bubble of fluid surrounded by a phospholipid bilayer
Compartmentalisation
Separation of functions into specific regions of the cells, allowing multiple distinct metabolic functions to occur at the same time
Coalescence
Phospholipids naturally arranging themselves to come together and form a ring-like structure
Three principles of cell theory
- All organisms are composed of one or more cells
- Cells are the smallest unit of life
- All cells come from pre-existing cells
Organic vs inorganic compound
Organic: generally complex carbon based compound, made in living organisms
Inorganic: don’t have to contain carbon (most don’t), found inside and outside living organisms
What did the Miller-Urey experiment demonstrate?
Inorganic gases can react to create organic compounds within conditions similar to early Earth.
How does the structure of fatty acids contribute to vesicle formation?
Phospholipids in an aqueous solution form a barrier to create a vesicle. This may have happened in primordial soup and creates cell membranes of early cells.
Requirements to be considered living
metabolism
growth
reproduction (independent)
response to stimuli
homeostasis
movement
nutrition
What is a cell?
Smallest unit of life
What is needed to create a living functional cell?
Catalysis: a catalyst that speeds up chemical reactions
Self-replication of molecules
Self-assembly of monomers into polymers (e.g. condensation reactions)
Compartmentalisation
- eukaryotes: organelles
- prokaryotes: ribosomes
Examples of how cells fulfill criteria for being living
Homeostasis -> regulates H2O balance
Metabolism (ability to carry out chemical reactions using ATP) -> cellular respiration happens in each cell
Reproduction/self-replication -> cell replication/mitosis
Examples of how viruses fail to meet the criteria for living
Homeostasis -/> no internal environment
Metabolism -/> does not use ATP
Reproduction/self-replication -/> needs a host
Conditions of the Miller Urey experiment
Inorganic gases: methane, ammonia, hydrogen
Vert hot ocean with water (due to high temperatures and lots of UV penetration)
Electrical activity (through an electrode)
= mimics conditions of Early Earth
Process of Miller Urey experiment
A lower chamber (the ocean) is heated, to mimic the hihg temperatures of Early Earth.
This produces water vapour that travels into the upper chamber. This upper chamber is filled with inorganic gases (methane, ammonia, hydrogen), which mixes with the H2O vapour. An electrode hits this upper chamber, to mimic lightning.
This goes through a condenser.
Proucts of the Miller Urey experiment.
Amino acids + carbon hydrogen chains, as well as water vapour. This combination is dubbed primordial soup. This contributed to evidence that biomolecules could spontaneously form under Early Earth’s conditions.
What does spontaneous vesicle formation provide evidence for?
Explains how all membranes arrived.
What is the process of spontaneous vesicle formation?
Amphipathic phospholipids spontaneously form a vesicle due to hydrophobic interactions
Ribozymes
Special type of RNA that can act as a catalyst. Has a role in protein synthesis
Protocell
General term for any unit contained by a membrane that is completing a cellular reaction
Radioactive isotope
Unstable form of an element that emits radiation
Half life
Length of time it takes for half of a radioactive isotope to change into another stable element
Index fossils
Distinctive, widespread and abundant fossils that is limited to a specific geological time
Hydrothermal vents
Places where hot water emanates from beneath the ocena floor. Formed when cracks of the crust of the seabed expose seawater to rocks below
Unique properties of RNA that suggest it could be an ideal first genetic material
Can spontaneously form from monomers as it is a simpler structure than DNA
Self-replicating properties
Can catalyse chemical reactions
Sequence of major stages in the evolution of life
Abiotic chemical compounds e.g. methane
Small organic compounds e.g. primordial soup
Polymers (aids by RNA catalysis)
Membranes (due to amphipathic nature)
Protocell
True cell with organelles
Last Universal Common Ancestor
Common ancestor to all currently living things. i.e. from before all prokaryotes and eukaryotes branched off
Relative dating of fossils
Whether the fossil is comparatively older or younger than nearby fossils absed on their placement in the rock
Absolute dating of fossils
Determining a specific age of a fossil in years, using carbon dating and knowledge of half lives
What is the RNA World Hypothesis?
Evolutionary theory that RNA was the initial genetic material, and evolved into DNA and proteins. This is contrasted by the Central dogma, which states DNA -> RNA -> proteins
Specific hypothesised details of RNA World Hypothesis
Within primordial soup, RNA easily self assembled. This is because of its simple structure. The RNA can then act as a catalyst for DNA replication (which requires many enzymes) and protein synthesis (ribozymes in RNA still do this).
Evidence for shared ancestry/Last Universal Common Ancestor
Universal genetic code
Same biomolecules
Same metabolic processes
Tracked ~300 shared genes
Why is it hypothesised that LUCA is in hydrothermal vents?
The ~300 shared genes were for anaerobic processes (occuring in the absence of O2). Therefore, LUCA may be found in a low oxygen environment. This low O2 environment, and other favourable conditions and many fossils, fits with Hydrothermal Vents
Most common substance for absolute dating of fossils
Carbon-14
5730 years half life
Cytology
Specific branch of biology focused on the study of the cell and all aspects related to cellular structure and function
Micrograph
Photo taken through a microscope
Micrometre compared to one centimetre
1 micrometre = 10^-4 cm = 10^-3 mm
Coarse v.s. fine focus on a microscope
Coarse makes larger adjustments to bring objects into focus
Fine makes small adjustments to add sharpness and clarity.
Contribution of cryogenic electron microscopy
Provides a resolution at 0.12 nanometres, allowing for the atoms within a protein to be visualised
Magnification
How many times larger the viewed image is than the actual image size
Resolution
How well you can differentiate two objects as separate (i.e. clarity and sharpness)
With a light microscope, what occurs when magnification increases?
Resolution decreases. Therefore, ideal magnification of a light microscope is 400-1000x, although some light microscopes can reach 2000x
What is the difference between electron and light microscopes in terms of resolution/magnification?
Electron microscopes can preserve resolution even at high magnifications. However, light microscopes decrease in resolution as magnification increases, usually working from 400-1000x
Formula for magnification
Magnification = image size/actual size
How to calculate magnification using a scale bar
Magnification = measured scale bar with ruler / given size on bar
What can light microscopes observe?
Living organisms. Both surface and internal (if thin).
Creates 2D images
What magnification do light microscopes work well with?
400-1000x. Some can go up to 2000x
What type of images do light microscopes create?
2D
Advantages of light microscopes
Can observe living organisms (see processes in action)
Can be in colour
Affordable (increases access)
Disadvantages of light microscopes
Poor resolution limits magnification
What is a scanning electron microscope (SEM)?
Electron microscope that uses a beam of electrons to scan outer surfaces of dead matter, creating detailed images of the exterior
What is a transmission electron microscope (TEM)?
Electron microscope that uses a beam of electrons through a very thin section of specimen that allows for internal structures to be viewed.
What can scanning electron microscopes observe?
Dead matter, detailed 3D images of surface.
Magnification of scanning electron microscopes
Up to 1,000,000x with great resolution
Advantages of scanning electron microscope
Higher magnification, 3D images
Disadvantages of scanning electron microscopes
Only black and white
Only non-living matter
Expensive
Type of images created by scanning electron microscopes
3D
What can transmission electron microscopes observe?
Dead matter, 2D images of internal structures
Magnification of transmission electron microscopes
Up to 1,000,000x with great resolution
Advantages of transmission electron microscopes
Higher magnification, has revealed organelle structure
Disadvantages of transmission electron microscopes
Must be very thin specimen (techniques required)
Non-living
Black and white only
Expensive
Advances to micrography
Freeze fracturing
Cryogenic electron microscopy
Use of fluorescent stain
Freeze fracturing
Technique that aids in viewing internal structures with an electron microscope.
Specimen is frozen and then broken at plane (i.e. fracture plane). Then, an etching of the plane is created and observed under an electron microscope
What scientific developments are a result of freeze fracturing?
Understanding the bilayer
Cryogenic electron microscopy
Protein structure is frozen on grid. The grid is placed under an electron microscope. Pattern of electron transmission reveals the structure of protein down to atoms. Software is used ot create a 3D image
What scientific developments are a result of cryogenic electron microscopy?
Detailed understanding of protein structure
Fluroescent stain
Fluroescent stain binds to a cellular component (only binds with specific ones). This is observed with a fluroescent light via microscopes with UV lights.
What scientific developments are a result of fluroescent stain?
Bright images of cellular structures
Immunofluoresence
Technique that uses antibodies with flurosence added. Antibodies are matched to bind to certain target molecules and give them a viral glow once bound
What scientific developments are a result of immunoflourescence?
Visualisation of specific proteins (i.e. whether present or not)
Prokaryotic cell
Simple and small cells that lack complex organelles
Eukaryotic cell
More complex cells that have membrane-bound organelles carrying out unique functions & all DNA is enclosed in a nucleus
Peptidoglycan
Carbohydrate and protein polymer that usually makes up the cell wall of prokaryotes
Features common to all cells
Cell membrane
DNA
Ribosomes
Cytoplasm
Gram positive bacteria
Has thick layer of peptidoglycan as cell wall