9 | Article: Tiwari et al. (2021): Reproducibility in Systems Biology modelling Flashcards
1
Q
Name two common reasons why computational models fail to be reproducible.
(2022_2)
A
- missing parameter values
- missing initial conditions
- inconsistency in model structure
2
Q
Give two suggestions what to change in the Hoffmann et al. (2002) article to improve its reproducibility.
(2022_2)
A
- share model codes for mathematical expression and simulation publicly ideally:
- well and unambiguously documented,
- in a standard format eg SBML,
- in an open model database.
- semantically enriched with annotations
- share numerical results publicly along with model codes
