6.4 CLONING AND BIOTECHNOLOGY Flashcards

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1
Q

What is vegetative propagation?

A

Vegetative propagation, or natural cloning, occurs in many species of flowering plants. A structure forms which develops into a fully differentiated new plant, which is genetically identical to the parent. The new plant may be propagated from the stem, leaf, bud or root of the parent, depending on the type of plant, and it eventually becomes independent from its parent. It often occurs in perennating organs, which enables plants to survive adverse conditions, and contain stored food from photosynthesis and can remain dormant in the soil.
for example, strawberry and spider plants.

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2
Q

Where does natural plant cloning occur in?

A

Natural plant cloning occurs in:
bulbs- e.g daffodil. the leaf bases swell with stored food from photosynthesis, buds form internally which develop into new shoots and new plants in the next growing season.
runners- e.g strawberry or spider plant. a lateral stem grows away from the parent plant and roots develop where the runner touches the ground, a new plant develops, runner eventually withers away leaving the new individual independent.
rhizomes- e.g marram grass. a specialised horizontal stem running underground, often swollen with stored food. buds develop and form new vertical shoots which become independent plants.
stem tubers- e.g potato. the tip of an underground stem becomes swollen with stored food to form a tuber or storage organ, buds on the storage organ develop to produce new shoots.

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3
Q

Why is natural cloning used in horiculture.

A

Natural cloning is exploited in horticulture by farmers and gardeners to produce new plants. It increases plant numbers cheaply, and the new plants have exactly the same genetic characteristics as their parents.

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4
Q

What are the advantages of using vegetative propagation instead of planting seeds?

A

Propagation from cuttings has many advantages over using seeds. It is much faster and guarantees quality of plants

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5
Q

What are the diadvantages of using vegetative propagation instead of planting seeds?

A

The main disadvantage for using propagation over seeds is the lack of genetic variation in the offspring should any disease or pest appear or if the climate changes.

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6
Q

Which food crops are produced via propagation?

A

Many of the worlds most important food crops are propagated by cloning
bananas, sugar cane, sweet potatoes and cassava are all propagated from stem cutting or rhizomes
coffee and tea bushes are also propagated from stem cuttings.

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7
Q

How is sugar cane cloned?

A

Sugar cane is cloned by cutting short lengths of sugar cane that are about 30cm long, with three nodes, and buried in a clear field in shallow trenches, covered with a thin layer of soil. Per hectare, 10-25000 lengths of stem are planted.

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8
Q

What is micropropagation?

A

Micropropagation is the process of making large numbers of genetically identical offspring from a single parent plant using tissue culture techniques. This is used to produce plants when a desirable plant does not readily produce seeds, doesn’t respond well to natural cloning, is very rare, has been genetically modified or selectively bred with difficulty, is required to be pathogen-free by growers e.g strawberries, bananas and potatoes

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9
Q

What are the basic principles for micropropagation and tissue culture?

A

Basic principles for micropropagation and tissue culture:
1. take a small sample of tissue from the plant to be cloned- the meristem tissue from shoot tips and axial buds is often dissected out in sterile conditions to avoid contamination by fungi and bacteria. this tissue is usually virus free
2. the sample is sterilised, usually by immersing it in sterilising agents such as bleach, ethanol, or sodium dichloroisocyanurate. the latter does not need to be rinsed off which means the tissue more likely to remain sterile. the material removed from the plant is called the explant
3. the explant is placed in a sterile culture medium containing a balance of plant hormones (including auxins and cytokinins) which stimulate mitosis. the cells proliferate, forming a mass of identical cells known as a callus
4. the callus is divided up and individual cells or clumps from the callus are transferred to a new culture medium containing a different mixture of hormones and nutrients which stimulates the development of tiny, genetically identical plantlets
5. the plantlets are potted into compost where they grow into small plants
6. the young plants are planted out to grow and produce a crop

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10
Q

What are the advantages of micropropagation?

A

Advantages of micropropagation:
- allows for the rapid production of large numbers of plants with known genetic make-up which will yield good crops
- culturing meristem tissue produces disease free plants
- makes it possible to produce viable numbers of plants after genetic modification of plant cells
- provides a way of producing very large numbers of new plants which are seedless and therefore sterile to meet consumer tastes (e.g bananas and grapes)
- provides a way of growing plants which are naturally relatively infertile or difficult to grow seed from (e.g orchids)
- provides a way of reliably increasing the numbers of rare or endangered plants

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11
Q

What are the disadvantages of micropropagation?

A

Disadvantages of micropropagation:
- produces a monoculture (many plants which are genetically identical) so they are all susceptible to the same diseases or changes in growing conditions
- a relatively expensive process and requires skilled workers
- the explants are vulnerable to infection by moulds and other diseases during the production process
- if the source material is infected with a virus, all of the clones will also be
- in some cases, large numbers of new plants are lost during the process

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12
Q

What is animal cloning?

A

Animal cloning:
- the goal is to take control of the reproductive process
- it is possible to select the specific combination of genes to get what you want which is appealing to people who breed animals
- researchers hope that these technique can be used in researching and treating human diseases and genetically altering animals for the production of human transplant organs

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13
Q

What is artificial twining?

A

Artificial twining:
- each cell in an early embryo is totipotent
- a split in the early embryo is produced manually
- used by the farming community to produce maximum number of offspring from good dairy/beef cattle or sheep
- process clones an embryo

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14
Q

Artificial twining- cattle casestudy.

A

Artificial twining- cattle casestudy:
- hormones used to enable to enable a cow with desirable traits to super ovulate
- ova are fertilised by male with desired traits = in vivo/in vitro
- around day 6 the embryo is split into several embryos
- they are then grown in a lab for a few days before being implanted into a surrogate

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15
Q

What is the process of somatic cell transfer?

A

Somatic cell transfer:
1. nucleus removed from somatic (body) cell of a desirable adult animal
2. nucleus removed from mature ovum of a different female
3. nucleus from adult somatic cell is placed into enucleated ovum and given a mild electric shock so it fuses and begins to divide
4. embryo transferred to surrogate and new embryo will be a clone of the animal from which the somatic cells are derived

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16
Q

What are the pros for animal cloning?

A

Pros for animal cloning:
- enables high yielding farm animals to produce more high yielding offspring
- enables success of a sire (male) at passing on desirable genes
- if the first cloned embryo is a successful breeding animal, more identical animals can be reared from reaming frozen clones
- many embryos from one engineering procedure
- used in pharming
- clone specific animals = e.g replace pets and top class race horses
- enable rare, endangered or extinct animals to be reproduced

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17
Q

What are the cons for animal cloning?

A

Cons for animal cloning:
- SCNT is a very inefficient process = takes many eggs to produce one clone
- many cloned animal embryos fail to develop and miscarry or produce deformed offspring
- animals produced by cloning have shortened lifespans
- SCNT relatively unsuccessful in increasing populations of rare organisms or allowing extinct species to be brought back to life

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18
Q

What is biotechnology?

A

Biotechnology involves applying biological organisms or enzymes to synthesise, breakdown or transformation of materials (in the service of people)
biotech describes a range of methods
- traditional methods (cheese, yoghurt, wine and bread production)
- latest molecular technologies (DNA manipulation to produce genetically engineered microorganisms that synthesise drugs such as insulin)
- use of biological systems to remove soil and water pollution (bioremediation)

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19
Q

What are examples of biotechnology?

A

Examples of biotechnology:
- use of fluorescent genes in other species e.g mouse glows green under UV light as it contains a special fluorescent gene from jellyfish, in a bid to mark cells for cancer research
- GM bacteria e.g GM streptomyces bacteria that may produce cellulase. bacteria can ferment plant cellulose to produce ethanol for use as a biofuel
- microalgae for biofuel production e.g grown in large tanks. as the algae grows it takes in co2, which re-releases when it is burnt. this makes it carbon neutral
- pharmaceuticals manufacture medicine using microorganisms. human insulin can be produced using bacteria
- GM mosquitos larvae of GM mosquitos glow green under UV light. researchers introduced the gene for enhanced green fluorescent protein into the mosquito genome. recently, mosquitos that carry dengue fever have been modified so that offspring die

20
Q

Why are microorganisms used?

A

Microorganisms used:
- economic consideration
- low temperatures for cultivation
- little oxygen/food needed
- no welfare issues
- genetic manipulation ensures products all utilised
- short life cycle
- rapid growth in a short time
- large quantities produced quickly
- easy to produce correct environment and remove waste

21
Q

What are the phases of the microorganism growth curve?

A

Microorganism growth curve:
1. lag phase - microorganism adjusts to new environment, cellular metabolism accelerated but no replication
2. log/exponential growth phase - rapid growth and division, close to or at maximum theoretical growth rate, asexual reproduction can occur up to once every 20 minutes in bacteria. if there is unlimited space and nutrients and all offspring divided at the same rate, there would be 2.2x10^43 in 48 hours. 4000 times weight of earth
3. stationary phase - nutrients used up, accumulation of waste materials, number of few cells is equal to the number of cells that die
4. death phase - nutrients fully depleted (medium not tended to), bacteria cease reproduction, death rate increases

22
Q

What are the uses of microorgansims?

A

Uses of microorganisms:
- brewing
- baking
- cheese making
- yoghurt production
- quorn production
- penicillin production
- insulin production
- bioremediation = breaking down contaminants/pollution in soil/water

23
Q

What are the advantages of using microorganisms?

A

Advantages of using microorganisms:
- produce protein faster than plant and animal cells
- production of them is not dependent on weather or breeding cycles
- can be made to taste like anything
- no welfare issues
- have little fat content and high protein content
- costs can be reduced as they can grow on human and animal waste
- can be genetically modified to produce the desired protein(s)

24
Q

What are the disadvantages of using microorganisms?

A

Disadvantages of using microorganisms:
-need sterile conditions which are carefully controlled
- people dislike the idea of eating microorganisms that have been grown on waste
- have little natural flavour and additives have to be added
- people have concerns over eating genetically modified food
- proteins produced have to be purified to ensure there are no toxins or contaminants
- have to be separated from the broth and processed to produce food

25
Q

Microorganisms and medicine.

A

Microorganisms and medicine:
- penicillin (first effective antibiotic)
- produced by a mould = penicillium nonatum
- yield from this is small
- commercial production didn’t begin until the discovery of penicillium chrysogenum

26
Q

What is the process of producing penicllin?

A

Penicillin production:
1. penicillium mould produces the antibiotic penicillin
2. scientists grow mould in deep batch fermenters by adding sugar and other key ingredients
3. scientists separate the penicillin from the mould
4. penicillin is purified for use as an antibiotic medicine

27
Q

What is penicillium chrysogenum?

A

Penicillium chrysogenum:
- needs high o2 levels and a rich nutrient medium to grow on
- sensitive to pH and temp
- process uses small fermenters as it is difficult to maintain high levels of o2 in large reactors
- mixture continuously stirred to keep it oxygenated
- growth medium contains a buffer
- temp maintained at 25-27 degrees c

28
Q

What is bioremediation?

A

Bioremediation is when microorganisms are used to break down pollutants and contaminants in soil or water.

29
Q

What are the approaches to bioremediation??

A

Approaches to bioremediation:
1. using natural organisms- many naturally break down organic material to produce co2 and h2o. soil and water pollutants are often biological (sewage, crude oil)
2. GMOs- scientists are trying to develop GM bacteria which can breakdown or accumulate contaminants which they do not naturally encounter
- often bioremediation takes place on the site of contamination. sometimes material will be removed for decontamination
- most of the time, natural organisms out perform GM ones but this could change with our ability to genetically modify organisms

30
Q

What is fermentation?

A

Fermentation is the process of culturing any microorganism in order to generate a specific product, either aerobically or anaerobically

31
Q

How can bioreactors maximise production?

A

How can bioreactors maximise production:
- negative feedback controlled by heating system
- o2 and nutrient sensors probes and valves
- aeration (oxygenating the mixture evenly) via impellers
- sealed reactors = aseptic units (GMOs must be contained by law)

32
Q

What are the types of metabolites?

A

Types of metabolites:
primary metabolites
- any metabolite formed as part of normal growth of the microorganism (e.g lipids, proteins, carbohydrates and waste products) often formed during the period of active growth
secondary metabolites
- these are substances that are not essential for normal growth but are still used by the cells (e.g pigments, chemicals used by plants to protect themselves from herbivores) not all microorganisms form these and they’re usually produced in the later stages of growth

33
Q

What are bioprocesses?

A

Bioprocesses:
batch culture - a culture of microorganisms that takes place in a single fermentation. products are separated from the mixture at the end of process
continuous culture - culturing microorganisms in a closed fermenter to which nutrients and other requirements are added steadily throughout the harvest. products are steadily harvested

34
Q

How does the bioprocess of batch culture work?

A

Batch culture:
1. microorganisms inoculated in a foxed volume of medium
2. as growth takes place, nutrients are used up, therefore, biomass and waste build up
3. culture reaches stationary phase, growth ceases, but microorganisms form some desired end products
4. process is stopped before the death phase and the products are harvested- the whole system is then cleaned and sterilised prior to a new culture being set up

35
Q

What are examples of batch culture?

A

Batch culture examples:
- penicillin = secondary metabolite so is only produced at certain stages of the MOs growth, new fermentation needed everytime
- enzymes = occurs in 2 stages, MO is growth then enzyme is extracted, purified and concentrated, after fermentation the culture is heating to kill the cells so any enzyme inside is released

36
Q

How does the bioprocess of continuous culture work?

A

Continuous culture:
1. microorganisms inoculated in a fixed volume of medium
2. sterile nutrient medium is added continually to the culture when it reaches the exponential point of growth
3. culture broth is continually removed - the medium, waste products, microorganisms and product - keeping the culture volume in the bioreactor consistent

37
Q

What are the examples of continuous culture?

A

Continuous culture examples:
- mycoprotein = culture medium contains glucose and ammonium phosphate is added, temp pH and o2 levels constant, nutrients are input steadily and liquid culture containing fungus is run off continuously

38
Q

What are immobilised enzymes?

A

Immobilised enzymes are enzymes with restricted mobility due to being trapped, this is able to carry out a particular reaction
- isolated enzymes are more efficient than whole organisms
- often, enzymes used in industrial processes are immobilised
- this is because enzymes are not cheap to produce and immobilised enzymes can be recovered from the reaction mixture a reused

39
Q

What are the advantages of immobilised enzymes?

A

Advantages of immobilised enzymes:
- immediately available for re-use
- downstream processing is reduced due to the separation of the products and reactants being easier and therefore cheaper
- a greater ease of manipulation as the catalytic properties of enzymes can be altered to fit a particular process and bioreactors can run continuously
- usually more stable because the immobilising material protects the enzyme from the effects of temperature and pH changes

40
Q

What are the disadvantages of immobilised enzymes?

A

Disadvantages of immobilised enzymes:
- any contamination of the product that occurs is costly to deal with as the whole process would need to be stopped and cleaned out
- can be less active because the substrate does not mix freely with the immobilised enzyme in the solution
- immobilisation of the enzymes requires additional time, equipment, materials and so overall more expensive to set up
- there can be more technical issues with the reactors as there are more things that can go wrong with the machinery

41
Q

How are enzymes immobilised?

A

Enzymes immobilised:
- bound to the surface of insoluble supporting materials by adsorption onto surface or covalent or ionic bonds
- entrapped in a matrix
- encapsulated in a microcapsule
- held behind a partially permeable membrane

42
Q

What is surface immobilisation - adsorption?

A

Surface immobilisation - adsorption:
adsorption to inorganic carrier such as cellulose, silica
- simple and cheap
- enzymes very accessible to substrate and activity is virtually unchanged
- enzymes can be lost relatively easily

43
Q

What is surface immobilisation - covalent/ionic bonding?

A

Surface immobilisation - covalent/ionic bonding:
covalent- carriers with amino, hydroxyl or carboxyl groups
ionic- to polysaccharides such as cellulose
- enzymes unlikely to be lost as they are strongly bound
- enzymes very accessible to substrate
- pH and substrate conc often have very little effect on enzyme activity
- active site of enzyme could be modified in the process, making it less effective

44
Q

What is entrapment in a matrix?

A

Entrapment in a matrix:
can use gelatine or polysaccharide matrix
- widely applicable to different processes
- may be expensive
- can be difficult to entrap
- diffusion of substrate and product to and from the active site can be slow
- effect of entrapment on enzyme activity varies greatly

45
Q

What is entrapment in a capsule?

A

Entrapment in a capsule:
the capsule holds the enzyme within a partially permeable membrane
- simple to do
- small effect on enzyme activity
- wildly applicable to different processes
- relatively expensive
- diffusion of substrate and product to and from active site can be slow

46
Q

What is the process of artificial twinning?

A

Artificial twinning process:
1. sperm taken from desirable adult male
2. artificial insemination/IVF
3. embryo splitting
4. incubated in lab
5. implantation into surrogate
6. produces offspring that are clones of each other