5.7 - Respiration Flashcards
Respiration def
The release of chemical potential energy form organic molecules inside mitochondria
What is ATP?
Adenosine Triphosphate
Uses of ATP and respiration
Used in active transport - sodium/potassium ion pump
Metabolic reactions
Protein synthesis
Endocytosis/pinocytosis/phagocytosis
Exocytosis - secretion of large molecules from cells
DNA Replication
Cell division
Movement
Activation of chemicals
Synthesis of large molecules, e.g. proteins such as collagen, etc
Why ATP is a good energy currency?
- ATP is relatively stable when in solution in cells
- ATP is readily hydrolysed by enzyme catalysis
- Whilst in solution, it can be easily moved from place to place within a cell
Anabolic reaction def
Metabolic reactions where large molecules are synthesised from smaller molecules
Catabolic reaction def
Metabolic reactions involving the hydrolysis of large molecules to smaller molecules
What is phosphorylation?
- When one or more phosphate groups are added to a molecule(e.g. ATP)
- Makes a molecule more unstable, so I easier to hydrolyse
What happens in glycolysis?
simple
- Anaerobic process
- Occurs in cytoplasm of the cell
- 10 reactions occur, each catalysed by a different enzyme, some with the help of the coenzyme, NAD.
- First stage of respiration, converts glucose to pyruvate
4 stages of respiration
What happens in them(simple)?
- Glycolysis - glucose(6C) is broken down to produce 2 molecules of pyruvate(3C)
- The link reaction/oxidative decarboxylation - pyruvate is dehydrogenated and decarboxylated and converted to acetate
- The Krebs Cycle - acetate is dehydrogenated and decarboxylated
- Oxidative phosphorylation - ADP is phosphorylated to AMP
Glycolysis mechanism(simple)
- Phosphorylation of glucose(6C) to hexose biphosphate
- Splitting each hexose biphosphate molecule into two triose phosphate molecules
- Oxidation of triose phosphate to 2 pyruvate molecules
What is NAD?
-NAD(Nicotinamode Adenine Dinucleotide) is an non-protein molecule that helps dehydrogenase enzymes to carry out oxidation reactions
In what stages of respiration does NAD function?
NAD oxidises substrate molecules during:
- Glycolyis
- The link reaction
- The Krebs Cycle
What is FAD?
- Flavine Adenine Dinucleotide
- It is a coenzyme involved in respiration
- More info needed
What are the three main stages of glycolysis?
- Phosphorylation
- Splitting the hexose biphosphate
- Oxidation of triose phosphate to pyruvate
Glycolyis full mechanism
Phosphorylation:
- One molecule of ATP is hydrolysed and the released phosphoryl group is added to glucose to make hexose Monophosphate
- Another molecule of ATP is hydrolysed and the phosphoryl group is added to the hexose phosphate to form a molecule of hexose bisphosphate
- The energy from the hydrolysed ATP molecules activated the hexose sugar and prevents it from being transported out of the cell
Splitting the hexose bisphosphate:
-Each molecule of hexose biphosphate is split into two three-carbon molecules, triose phosphate, each with a phosphate group attached
Oxidation of triose phosphate to pyruvate:
- Dehydrogenase enzymes, aided by coenzyme NAD, remove hydrogens from triose phosphate
- The two molecules of NAD accept the hydrogen atoms(protons and electrons) and become reduced
- At this stage, two molecules of NAD are reduced for every molecule of glucose undergoing glycolysis
- Also at this stage, four molecules of ATP are made for every two triose phosphate molecules undergoing oxidation by substrate level phosphorylation
OVERALL:
2 ATP produced
2NADH produced(reduced NAD)
2 pyruvate produced
Why does glucose undergo phosphorylation in glycolysis?
- Glucose is a hexose sugar, so contains six carbon atoms and is very stable.
- So it needs to be phosphorylated in order to become less stable so it can be broken down by hydrolysis into two three-carbon compounds
What are the products of glycolysis?
From each molecule of glucose, at the end of Glycolyis there are:
- Two molecules of ATP(net gain, as four were made, but two were used ‘kick start’ the process, so net gain is two molecule of ATP)
- Two molecules of reduced NAD
- Two molecules of pyruvate
What can pyruvate be used for after glycolysis?
- actively transported into mitochondria for link reaction (aerobic conditions)
- converted into lactate (anaerobic conditions)
- converted into ethanol (anaerobic conditions)
Hydrolysis of ATP
ATP —> ADP + Pi + H2O —> AMP + Pi + H2O—> Addnosine + Pi
Pi - phosphate group
How much energy does hydrolysis of ATP, ADP and AMP release?
ATP - 30.5kJ mol-1
ADP- 30.5kJ mol-1
AMP-13.8kJ mol-1
Where does aerobic respiration take place in the cells
Mitochondria
Individual structures in mitochondria
- Matrix
- Cristae
- Inner Membrane
- Outer Membrane
- Intermembrane space
- Stalked particles(ATP synthase)
Function of the matrix in mitochondria
The matrix is where the link reaction and Krebs cycle takes place
Matrix contains:
-Enzymes that catalyse stages of link reaction and Krebs cycle
-Molecules of coenzymes NAD and FAD
-Oxaloacetate - four carbon compound that accepts the acetyl group from the link reaction
-Mitochondrial DNA - some of which codes for mitochondrial enzymes and other proteins
-Mitochondrial ribosomes, which are structurally similar to prokaryotic ribosomes.
This is where proteins synthesis occurs
Function of outer membrane in mitochondria
-Contains proteins, some of which form channels or carriers that allow the passage of molecules, such as pyruvate, into the mitochondrion
Function of inner membrane in mitochondria
- Lipid bilayer in inner membrane is less permeable to small ions such as hydrogen ions(protons) than the outer membrane
- The folds, cristae, in inner membrane give a large surface area for the electron carriers and ATP synthase embedded in them
- Electron carriers are proteins arranged in electron transport chains
- Electron transport chains are involved in oxidative phosphorylation
Function of intermembrane space
- Between the outer and inner layers of the mitochondrial envelope - involved in oxidative phosphorylation
- Inner membrane in close contact with mitochondrial matrix, so the molecules of reduced NAD and FAD can easily deliver hydrogens to the electron transport chain
Function of cristae in mitochondria
Provides a large surface area for electron carrier proteins and ATP synthase
Outline events in the electron transport chain
H
Info about ATP synthase/ ATPase
- Large
- Protrude from the inner membrane into the matrix
- Protons can pass through them
Structures in ATP synthase
- Proton channel - channel through centre of base piece that allows protons to move through
- Base piece - protrudes through phospholipid bilayer in inner mitochondrial membrane
- Stalk or axle - connects proton channel to headpiece
- Headpiece
Decarboxylation def
-Removal of a carboxyl group from a substrate molecule
Dehydrogenation def
-Removal of hydrogen atoms from a substrate molecule
Substrate-level phosphorylation def
Production of ATP from ADP and Pi during glycolysis and the Krebs cycle
Pyruvate info
H
Link reaction mechanism
- Pyruvate is decarboxylated and dehydrogenated, catalysed by pyruvate dehydrogenase, which catalyses the sequence of reactions that occur during the link reaction
- No ATP is produced during this reaction
- The carboxyl group is removed and is the origin of some of the CO2 produced during respiration
- Decarboxylation and dehydrogenation of pyruvate produces and acetyl group (dehydrogenation and then decarboxylation)
- The acetyl group combines with coenzyme A(CoA) to become acetyl CoA
- The coenzyme NAD becomes reduced (==> 3ATP)
- Coenzyme A accepts the acetyl group and forms CoA acetyl
- CoA acetyl carries the acetyl group on to the Krebs cycle
Is ATP produced during the link reaction?
No ATP is produced
Outline simple mechanism of Krebs cycle
- Krebs cycle takes place in the mitochondrial matrix
- Krebs cycle is a series of enzyme-catalysed reactions that oxidises the acetate from the link reaction to two molecules of CO2
- All done while conserving energy by reducing the coenzymes NAD and FAD
- These reduced coenzymes then carry the hydrogen atoms to the electron transport chain on the cristae, where they will be involved in the production of many more ATP molecules
Krebs cycle mechanism
- The acetyl group released from acetyl CoA combines with a four-carbon compound, oxaloacetate
- This forms a six-carbon compound, citrate
- Citrate is dehydrogenation and decarboxylated
- This produces a five-carbon compound, one molecule of CO2 and one molecule of reduced NAD
- This pentose compound is further dehydrogenation and decarboxylated
- This produces a four-carbon compound, one molecule of CO2 and one molecule of reduced NAD
- This four-carbon compound combines temporarily with, and is then released from, coenzyme A.
- At this stage, substrate-level phosphorylation takes place, producing one molecule of ATP
- The four-carbon compound is dehydrogenated, producing a different four-carbon compound and a molecule of reduced FAD
- Rearrangement of the atoms in the four-carbon compound, catalysed by an isomerase enzyme, followed by further dehydrogenation, regenerate a molecule of oxaloacetate
- So the cycle can continue
- For every molecule of glucose there are two turns of the Krebs cycle
Products of link reaction
Reduced NAD - 2
Reduced FAD - 0
CO2 - 2
ATP - 0