3 Review Of Medical Microbiology Flashcards
Prokaryotic organisms
Unicellular organisms that lack a true nucleus and nuclear membrane
Bacteria
Single, closed circular chromosome of double-stranded DNA
Nucleiod
Has nucleiod, plasmid and chromosomal or plasmid exchange via transformation, transduction or conjugation
Genome
3 Means of genetic recombination
Transformation
Transduction
Conjugation
Energy generation of bacteria?
Electron transport chain
Size of bacteria
0.2 to 2 um in diameter and 1-6 um in length
3 nutritional needs of bacteria
Carbon
Nitrogen
Energy (ATP)
Needed for synthesis of cellular constituents
Carbon
Necessary for synthesis of protein
Nitrogen
Needed for cellular functions
Energy
Optimum pH for growth
7.0 to 7.5
Optimum growth temperature
35 to 37 degree celsius
Require oxygen for growth
Obligate aerobes
Grow in the presence of oxygen but grow best in anaerobic environment
Aerotolerant aerobes
Grow in both aerobic and anaerobic environments
Facultative anaerobes
Cannot grow in the presence of oxygen
Obligate anaerobes
Require concentrations of 5% to 10% CO2 for optimal growth
Capnophilic
Grow optimally in a reduced level of oxygen
Microaerophilic
Anaerobic process by which bacteria catabolize carbohydrates to produce energy
Carried out by both obligate and facultative anaerobes
Fermentation
Final electron acceptor in fermentation
Organic compound
Efficient process by which obligate aerobes and facultative anaerobes generate energy
More efficient mechanism for energy generation than fermentation
Respiration(oxidation)
Final electron acceptor of respiration
Molecular oxygen
Osmotic barrier and may be a site of antibiotic infection
Essential for bacterial viability
Cell membrane
Thick, rigid peptidoglycan layer
Site of action of penicillin and cephalosporin
Gram positive cell wall
Component of gram positive wall
Teichoic and lipoteichoic acids
Thinner peptidoglycan layer, but also an outer LPS layer
Gram negative wall
Virulence factor
Causes shock, sepsis, fever, DIC, and leukopenia
Endotoxin
Prevent or inhibit phagocytosis
CHIEF DTERMINANT OF VIRULENCE
Capsule
Short, hairlike structures that serve to attach bacteria to target cells
Pili/Fimbriae
Exchange of DNA between bacteria during conjugation
Conjugation pili
Example of bacteria that uses conjugation pili
Interference with attachment prevents infection
Neisseria gonorrhoeae
Means of survival that make disease control very difficult
Flagella
Spore forming genera
Bacillus and clostridium
Examines smears of clinical specimen
Initial treatment, and often presumptive ID can be made
Composition of it and its function
Gram’s stain V primary stain I Mordant-binds crystal violet to cell wall A wash out any unbound dye S Counterstain
Serves as internal control in gram stain that act as cellular debris
Stain pink
WBC AND RBC
Orange fluorescent stain that is used to detect bacteria in body fluids
Very sensitive and can detect small numbers of bacteria that are living or dead
Acridine orange stain
Detect bacteria in direct smears with excess cellular debris
Acridine orange stain
Demonstrates metachromatic granules and characteristic morphology of C. diphtheriae from Loefflercoagulated serum medium
Methylene blue
Detect organisms that do not stain well woth other conventional stains
Acid fast
Example of mycobacterium
Mycobacterium spp, Nocardia, Actinomyces
Primary stain in acid fast
Contains a surface-active detergent to facilitate penetration of the stain without heating
Carbolfuchsin
Counterstain in acid fast
Methylene blue
Fluorescent stain that detect mycolic acid and can be used for staining acid fast organisms
Cell appear yellow against a dark background
Auramine-rodamine stain
Stained with auramine-rhodamine, decolorized with acid alcohol and then flooded with potassium permanganate
Process of auramine rodamine stain
Binds specifically to chitin which is found in fungal cell walls
Detect yeast cells and hyphae in skin scrapings and other specimens
Calcofluor white stain
Microorganisms that are frequently found on or in the bodies of healthy personss
Local conditions select for those organisms suited for growth in a particular area
Normal flora
Colonize an area for months or years
Resident flora
Present at a site temporarily
Transient flora
Live at the expense of the host
Parasite
Benefit of the host
Symbionts
Neutral effect on the host
Commensals
Harbors an organism without manifesting symptoms but is capable of transmitting infection
Carrier
Organisms that do not normally cause infection
Opportunists
Not eliminated by washing or superficial antisepsis
Skin
Effective barrier to microbial invasion
Intact skin
NF of skin in sebaceous glands
Propionobacterium acnes
NF OF SKIN
Micrococcus, Staphylococcus, diphtheroids
NF of mouth
Strep,
Coag (-) staph
Peptostreptococcus
Other anaerobes
NF of nose and nasopharynx
S. aureus, S. epidermidis and Strep
Present transiently during commjnity outbreaks of infections
Strep pneumoniae
H. influenzar
N. meningitidis
NF of GI
Bacteroides Eubacterium Anaerobic strep Enterococcus Clostridium Enterobacteriaceae
NF of vagina
lactobacillus
Anaerobic gram (-) rod shaped bacteria
Gram pos cocci
Nonspecific mechanism of resistance to disease
Innate immunity or natural immunity
Examples of innate immunity
Give 5
Physical barriers- skin mucous membranes, cilia
Cleansing action-of fluids in the eyes, respiratory, digestive, urinary and genital tracts
Antimicrobial substances-secretory IgA, lysozyme, b-lysins and INF
Indigenous microbial flora-compete with invading bacteria and produce inhibitory bacteriocins
Phagocytosis, inflammation and complement activation
Response to a specific foreign antigen
Acquired or specific immunity
Response to immunizatio or disease
Active
Placental transfer or infusions of serum or plasma
Passive
Involves antibody production by B cell
Humoral response
Involves cells, such as macrophages, cytokines and T lymphocytes
Provides immunity against intracellular pathogens, including viruses, fungi and mycobacteria
Cell-mediated immunity
Criteria for a successful pathogen
DASMA D- egree of pathogenicity A- ppopriate portal of entry S- ufficient infective dose M- ust be able to overcome host resistance mechanisms including immune responses and cause disease in SUSCEPTIBLE HOST A- ppropriate portal of exit
Ditectly related to its virulence
Degree of pathogenicity
Virulence factors?
Adhesion
Capsular polysaccharide
Production of extracdllular toxins and enzymes
Bacteria that has low infective dose?
Shigella
Bacteria that has high infective dose
Salmonella
Transmission of bacteria?
- Airborne transmission
- Ingestion of contaminated food and water
- Sexual transmission
- Animal and human bites
- Arthropod vectors
- Zoonoses
General guidelines in collecting and handling of clinical specimens
- Should be from the infection site and not contaminated by the surrounding area
- Should be collected before antimicrobials are administered
- Appropriate collection devices and containers should be used and must be sterile. Aseptic techniques is required
- Should be labeled with Px ID, date and time of collection and the source of specimen
Transport medium for stool
Buffered glycerol saline
Cary-blair transport medium
Amount of blood to be collected for blood culture
20-30 ml for adult
1-5 ml for infants and small children
Effect of swabs in abscess aspirates or exudates as well as synovial, pericardial and chest fluid
Inhibit growth of anaerobes or increase the likelihood of contamination with indigenous bacterial flora from adjacent tissues
Guidelines in collection of specimen in the genital tract of male
- Exudates may be expressed from the urethral orifice or small-diameter swab may be inserted to 3-4 cm into the urethra
- Played immediately on the appropriate media and not allowed to dry or be exposed to cold temp
- Direct gram’s stain smear should be prepared
Guidelines in collection of spx in the cervix of female
- Cervical mucus plug is removed
- Sterile swab is inserted into the cervix, rotated, and allowed to remain for a few seconds
- Plated immediately to appropriate media
- Gram’s stain.
What is lethal to genital pathogens?
Refrigeration
Exemption in the transport of specimens in the lab
- Temp sensitive organisms (neisseria)
- Blood culture bottles
- CSF
Least desirable collection and transport media
Inappropriate for culturing anaerobes, although in some clinical settings, culturettes are often used
Swabs
Used in all labs
Compositin of it?
BAP, 5% sheep RBC
For fastidipus isolates?
CAP
Specialized media that are used when specific organisms are suspected
MSA
Bismuth sulfite agat
Campylobacter agar
TCBS agar
Can be a substitute to EMB
MacConkey agar
Recommended for the culture of anaerobes
Prereduced anaerobically sterilized (PRAS) cultute media
Normal incubation temperature
35-37 degree celsius
Enhances the growth of fastidious bacterial isolates
Capnophilic atmosphere of 5-10% CO2
Recommended incubation of stool cultures for isolation of C. jejuni
Microaerophilic, capnophilic atmosphere at 42 to 45 degree celsius
Specimen rejection criteria
- 24 hr urine or sputum collections
- Specimens received in nonsterile or contaminated containers (leaked out)
- Specimens contaminated with barium or other foreign substances
- Culturing Foley catheter tips
- Saliva instead of sputum
- Unrefrigwrated urine specimens 2 hrs or more post collection
- Anaerobic culturing of midstream urine, upper respiratory tract, superficial skin or feces specimens
Appropriately cultured from feces
Clostridium species