2B- Enzymes and Clinical Enzymology Flashcards
Give a definition of “enzyme”
Enzymes are proteins that act like catalysts, which increase the rate of chemical reactions. They bind reactants/substrates, covert them to products, and release the products. They may be modified in the process but return to their original state after the reaction is complete. They also regulate metabolic processes in the body.
What are the 3 steps in an enzyme-catalyzed reaction?
- Binding of a substrate: E + S ES 2. Conversion of bound substrate into a bound product: ES EP 3. Release of product: EP E + P
What is an active site?
It us usually a cleft or crevice in the enzyme formed by 1 or more regions of the polypeptide chain. In the site cofactors and other functional groups transform the bound substrate into products.
Describe the “lock and key” model for substrate binding
Binding site is specific for a certain substate, and binds them through multiple hydrophocic interactions, electrostatic interactions or hydrogen bonds. Very specific.
Describe the “induced-fit” model for substrate binding
As the substrate binds, enzymes undergo a conformational change that repositions the side chains of the AA’s in the active site and increases the numebr of binding interactions. Not a rigid “lock” like the lock-and-key model, but a dynamic fit created by the overall structure of the enzyme.
What are coenzymes?
Coenzymes are complex nonprotein organic molecules that participate in catalysis by providing functional groups. They are usually synthesized by vitamins.
How do metal ions contribute to the catalytic process?
Metal ions have a + charge and act like electrophiles (attract electron groups). They assist binding the substrate, or stabilize developing anions in the reaction. They can also accept and donate electrons in REDOX reactions
How does pH affect enzyme activity?
How does temperature affect enzyme activity?
How do organophosphates work?
THey are covalent inhibitors- they form extremely tight bonds with the active site and inhibit them.
DFP, for example, forms an extremely tight bond with the active site of aceytlcholinesterase, thereby inhibiting the enzyme from degrading Ach in chemical synapses
How does aspirin work?
Aspirin is a covalent inhbitor of the enzyme prostaglandin endoperoxide synthase (AKA cyco-oxygenase)
It resembles a protion of the prostaglandin precursor that is a physiological substrate for the enzyme
How does penicillin work?
It is a covalent inhibior to the enzyme copoptidyl transferase
the beta-lactam ring of PCN has a strong resemblance of the noramal transpeptidation rection
it forms an irreversible inhibitor in the active site and are termed suicide inhibitors
How does allopurinol work?
It is an covalent inhibitor that decreases gout by inhibing xanthine oxidase
the drug normally converts hypoxanthine to xanthine and xanthine to uric acid
How does streptokinase work as a therapeutic agent?
It’s not a pure enzyme, but from a mixture of streptococcus
activates fibrinolytic enzyme system –> breaks down blood clots
can only be used once- elicits an immune response after the first use
How does tissue plasminogen activator (t-PA) work as a therapeutic agent?
used to dissolve blood clots after a MI or CVA
has the same activity as streptokinase but because it’s basically the same as endrogenous t-PA, it doesnt have an immune response.
How does asparaginase work as a therapeutic agent?
it breaks down asparagine (which is a preferred metabolic substrate for certain tumors)
used to treat adult leukemia
What is the Michaelis-Menten equation?
Where Km = (k2 +k3)/k1
and Vmax = k3[E]
and
E + S —k1–><-k2– ES –k3–> E + P
Interpret the graph (axises, [S], red line, Vmax/2, Km)
The x-axis is the substrate concentration, as you increase the [S] you increase the reaction velocity (vi)
The red line is the enzyme showing MM kinetics
as you increase [S], the enzyme reaction velocity approaches Vmax but never reaches it, as all of the enzyme molecules contain bound substrate
Once it reaches Vmax, the enzyme is fully staurated.
1/2 of the Vmax is Km, which is where 1/2 of the enzymes contain bound substrate. The higher the Km, the higher the [S] required to reach 1/2Vmax