2.8-2.9 Resp and photosynthesis Flashcards

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1
Q

Cells require energy for: (3)

A

Movement of organelles/cells
Synthesis of large molecules
Active trnsp

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2
Q

ATP yield from aerobic vs anaerobic

A

Aerobic = 38 ATP
Anaerobic = 2 ATP

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3
Q

Stages of aerobic respiration and location

A

Glycolysis (cytoplasm)
Link Pathway (mitochondrial matrix)
Krebs cycle (matrix)
Oxidative phosphorylation (cristae)

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4
Q

Glycolysis process

A

ATP required = 2
ATP produced = 4 (net 2)
NADH produced = 2

  1. Substrate level phosphorylation
    Phosphorylation of glucose molecule to form fructose-1,6-biphosphate
    Requires 2 ATP
  2. Lysis
    Lysis of F16BP to form 2x 3C sugars of glyceraldehyde 3 phosphate
  3. Oxidation and ATP formation
    - Each G3P undergoes oxidation to form 1 NADH
    - Energy released is used to add Pi to remaining 3C compound
    - Removal of 2 Pi groups from molecule by enzymes, add to 2ADP to form 2ATP
    - Form pyruvate
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5
Q

Link pathway process

A

Oxidative decarboxylation

  1. Pyruvate from glycolysis enters mitochondrial matrix
  2. Enzymes remove 1 CO2 - decarboxylation
  3. Removal of 1 H, accepted by NAD+ to form NADH - oxidation
  4. Form acetyl group, reacts with Coenzyme A to form Acetyl-CoA

forms 2NADH, 2 CO2/ glucose

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6
Q

Significance of high energy bonds in acetylcoa

A

energy rich bonds are required to supply energy needed to form citric acid in krebs cycle.

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7
Q

Krebs cycle process

A
  1. Energy rich electrons are removed from organic molecules, transferred to electron carriers FAD+ and NAD+
  2. 2C Acetyl CoA + 4C oxaloacetate to from 6C citrate
  3. Oxidative decarboxylation releases 2CO2 (4CO2 in total) molecules per pyruvate, conversion from 6C to 5C, 5C to 4C releases CO2.
  4. Total produce 6NADH, 2 FADH2, 2 ATP per glucose (ATP produced by substrate level phosphorylation)

6C > 5C > 4C > 4C > 4C, reduction in C –> co2 produced. first 4C –> 4c is fADH, rest is NADH. 5C –> 4C has ATP

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8
Q

Oxidative phosphorylation in terms of chemiosmosis

A

Def chemiosmosis: use of proton gradient to generate ATP

Protons accumulate in intermembrane space
Proton gradient across inner membrane
Special channels coupled with ATP synthase permit H+ to pass through down concentration gradient
As H+ ions move through protein channels, ATP synthase uses energy of proton gradient to synthesize ATP through chemiosmosis

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9
Q

Oxidative phosphorylation process - essay

A
  1. NAD and FAD reduced to NADH and FADH by gaining electrons
  2. NADH produced in glycolysis, link and krebs, FADH2 only produced in krebs
  3. NADH2 and FADH 2 delivers electrons to ETC at inner membrane, mitochondrial cristae.
  4. Electrons release energy as they flow along the chain from one carrier to another
  5. Oxygen final electron acceptor (highest affinity)
  6. Proteins in inner membrane act as pumps, use energy from the electrons to pump protons into intermembrane space
  7. Protons accumulate in intermembrane space, high concentration of protons in intermembrane space, lower concentration in matrix - proton gradient across inner mitochondrial membrane between imspace and matrix is established.
  8. Protons pass through specialized channels in cristae coupled with ATP synthase
  9. ATP synthase makes use of energy from the proton gradient to convert ADP to ATP.
  10. Each NADH = 3 ATP, each FADH2 = 2 ATP
    Total = 34 ATP
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10
Q

Adaptations of mitochondria

A

Inner membrane:
- Location of etc and atp synthase
- increased sa by folding into cristae, more ATP synthase = increase ATP synthesis
- Impermeable to protons, allowing a concentration gradient between intermembrane space and matrix

Intermembrane space:
- Small space in which protons accumulate, allows for high concentration of protons with resulting concentration gradient required for chemiosmosis to occur.

Matrix:
- contains enzymes required for krebs and link

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11
Q

Define respiration

A

Controlled release of energy from organic compounds to produce ATP

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12
Q

Aerobic vs anaerobic respiration

A

Oxygen v without oxygen
Produces CO2 and H2O vs produces ethanol and CO2 in yeast, lactic acid in mammals
Produces alot of energy 38ATP, produces less energy 2ATP

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13
Q

Lactic acid vs ethanol anaerobic resp

A

Produce lactic acid v produce co2 and ethanol
Lactic acid can be converted back into pyruvate when oxygen becomes available again v energy in ethanol is permanently unavailable

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14
Q

Lactic acid fermentation process and applications

A

Process
- Glycolysis: Glucose –> 2 Pyruvate 2 ATP + 2 NADH
- 2 Pyruvate –> 2 Lactate + 2 NAD+

Applications
- Supply small amount of ATP rapidly, maximize power of muscle contractions, eg sprinters
- Results in increased concentration of toxic lactate. After vigorous muscle contractions, lactate must be broken down with oxygen.
- Accumulation of toxic lactate results in muscle cramps and fatigue.

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15
Q

Process and applications of Ethanol fermantation

A

Process
- Glycolysis: Glucose –> 2 Pyruvate 2 ATP + 2 NADH
- 2 Pyruvate –> 2 Acetaldehyde + 2CO2
- 2 Acetaldehyde –> 2 Ethanol + 2NAD+

Applications
- Yeast in bread making - flour + water + yeast creates CO2 which causes bread to rise. EtOH produced is evaporated during baking
- Production of bioethanol - Starch and cellulose present in sugarcane and corn is first broken down into sugars. yeast converts sugars into ethanol in large fermenters. Ethanol produced can be purified by distillation.

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16
Q

Recall how to draw absorption vs action spectrum for photosynthesis

A

Absorption spectrum - absorption/% against wavelength of light/nm

Action spectrum - relative photosynthesis rate against wavelength of light/nm

400-700nm

17
Q

Factors affecting rate of photosynthesis

A

Increase in light intensity increases rate of photosynthesis until a plateau is reached at higher light intensities where another factor becomes limiting factor.
- Light needed for light indep reactions
- High light intensity may bleach chlorophyll, slow down photosynthesis

Increase in temp increases rate of photosynthesis to an optimum, above which rate drops
- temp affects enzyme (rubisco) activity
- increase to optimal temp - optimal rate of carbon fixation. Higher temp - do not work effectively

Increase in CO2 conc increases rate of photosynthesis until a plateau is reached at higher CO2 levels.
- CO2 is needed for calvin cycle for carboxylation of RuBP
- under normal conditions, CO2 is conc for limiting factor for rate of photosynthesis.

18
Q

Light dependent stage
- definition
- location
- Explain photosystem structure, accessory and primary pigments

A

Use of light energy to carry out photolysis of water to provide the protons and electrons required to carry out redox reactions to produce ATP and reduce NADP to NADPH

Thylakoid membrane

Photosystem:
Reaction-center complex surrounded by light-harvesting complexes. Light harvesting complex funnel energy of photons to reaction center. Reaction center also contains pigments which absorb light energy to promote electrons to a higher energy level before donating them to ETC.

Light harvesting complex contains accessory pigment - traps light energy, channels it to primary pigment.

Reaction center contains primary pigments - donates high energy electrons to ETC (Chlorophyll a in P680 and P700)

19
Q

Light dependent stage - essay

A
  1. Photolysis of water in thylakoid space
  2. P680+ accepts electrons
  3. Photon hits accessory pigment, energy passed among pigment molecules until it excites P680 in reaction center
  4. 2 excited electrons from P680 to primary electron acceptor
  5. Electrons pass through redox reactions from primary electron acceptor to subsequent carrier along ETC
  6. Energy from excited electrons going down ETC used to pump protons
  7. H+ accumulate in thylakoid
  8. Steep proton gradient, diffusion down through ATP synthase produce ATP
  9. P700 accepts electrons passing from PS II from ETC
  10. Light excites P700, produces 2 excited electrons
  11. Electrons transferred to electron acceptor, donate to electron carriers.
  12. Transferred from P700 down ETC to Fd then to NADP
    NADP + H+ in stroma to form NADPH with NADP reductase.
  13. Cyclic - electrons from PS I are excited and pass down ETC to PS I.
20
Q

Cyclic vs noncyclic phosphorylation

A

Pathway of electrons
First e donor
Last e acceptor
Products
PS involved
High concentration of H+ due to

PEEPH

21
Q

Photophosphorylation vs Oxidative phosphorylation

A

LLEEED

Location
Light energy
Energy for synthesis comes from
Electron donors
Electron acceptors
Direction of proton flow (inwards outwards)

22
Q

Light independent stage - essay

A

Occurs in stroma

Carbon fixation
- CO2 added to ribulose-1,5-biphosphate, catalyzed by Rubisco
- Form unstable 6C compound, splits into 2 glycerate-3-phosphate

Reduction
- Glycerate-3-phosphate reduced to triose phosphate using NADP and ATP
- ATP provides PO4, NADPH provides hydrogen

Regeneration of RuBP
- 5 of 6 G3P is converted back to RuBP
- 1 of 6 G3P is converted to 6C sugar molecule used to build carbohydrates.

Fixing of 3 CO2 molecules requires = 9ATP, 6 NADPH

23
Q

Role of hydrogen ions during photosynthesis

A

ATP synthesis
- Photolysis
- energy from excited electrons produced by photosystem II and I used to pump protons into thylakoid
- concentration gradient
- chemiosmosis

NADPH synthesis
- NADP reacts with H+ in stroma to form NADPH

ATP and NADPH used for synthesis of TP from Glycerate 3 phosphate

24
Q

Structure of chloroplast and functions

A

Small internal volume of thylakoid - quickly increase H+ conc gradient

Suitable pH of stroma, contains enzymes - optimal pH for greatest activity of Rubisco

Photosynthetic pigments arranged into photosystems on thylakoid membrane, many grana - increase SA for light absorption

Lamellae connect grana - increase photosynthetic efficiency

Double membrane surrounding chloroplast - permeable to CO2, ATP, O2, sugars, other products of photosynthesis

25
Q

Calvin vs krebs

A

Location - stroma v matrix
Electron carriers - NADPH vs NADH/FADH2
CO2 - Fixed by Rubisco v released by ox. decarboxylation
ATP - utilized for formation of TP, regeneration of RuBP v synthesized by substrate level phosphorylation