10 Continuous Markov Processes and Diffusion Processes Flashcards

1
Q

Here: Markov processes that are continuous in time with continuous sample paths =>
with time and X(t) = x ∈ (−∞, ∞) or [a,b] where range state space S continuous

A

We focus on single-variate process whose state space is one dimensional

at each time only one RV

A continuous MP X(t) is defined by its probability density function pdf p(x,t) and transition pdf (tpdf) p(y,s;x,t) with s>t

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2
Q

The pdf is the function whose integral over a domain give the probability that X(t) is in that domain:

A

Prob {X(t) = x ∈ [a_1, a_2]} =
integral_[a_q,a_2] p(x, t) dx

probability conservation means over S this equals 1

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3
Q

Assuming time homogeneity (only time difference matters for transitions), the
tpdf p(y, s; x, t)

is the probability density of the transition from state (x,t) to state (y,s),
There if often time homogeneity=> transition depends only on time difference s-t and in this case

A

p(y, s; x, t) = p(y, x, s − t)

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4
Q

Characterisation of time evolution of via its pdf follows from the Chapman Kolmogorov equation
(CKE) that now reads

A

p(x, t; x_0, t_0) = integral_ -∞,∞
p(x, t; x_1, t_1)p(x_1, t_1; x0, t0) dx_1,
for t_0 < t_1 < t,

p(x, t) = integral_ -∞,∞
p(x, t; x1, t1)p(x1, t1) dx1, for t0 < t1 < t

when the initial state X(0) is known
With pdf and tpdf
=> moments and jump moments of X(t):

or assuming S = (−∞, ∞)

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5
Q

kth (“raw”) moment =>

A

E [X^k(t)]
=integral_ -∞,∞
x^k p(x, t)dx

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6
Q

kth jump moment
∆X(t) = X(t + ∆t) − X(t)

giving

A

lim_∆t→0 (1/∆t) E(∆X(t))^k|X(t) = x)

= lim_∆t→0 (1/∆t) integral_(-∞,∞)
(y − x)^k p(y, t + ∆t; x, t)dy

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7
Q

diffusion process

A

Diffusion processes is a class of continuous Markov processes similar to the Brownian motion, which
is the continuum version of the random walk (Chapter 7). Diffusion processes are defined by 2 coefficients: the first (drift) and second (diffusion) jump moments

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8
Q

Useful to revisit the 1D random walk (Chapter 7)

A

p(x, t)∆x = Prob{X(t) ∈ [x, x + ∆x]} =>
p(x, t+∆t) =
q p(x − ∆x, t) + (1 − q) p(x + ∆x, t) | {z }

trans. to x from x − ∆x with prob. q
+
trans. to x from x + ∆x with prob. 1 − q

Taylor expansion in ∆x
p(x ± ∆x, t) = p(x, t) + (+−∆x) ∂p(x, t)/∂x
+ (∆x)^2/2 ∂^2p(x, t)/∂x^2

Substituting on the RHS, rearranging, dividing by and taking the limit ∆t → 0

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9
Q

Convection-diffusion equation:

A

∂p/∂t = −c (∂p/∂x) + D ∂^2p/∂x^2

with drift coeff
c=
= lim_∆t→0,∆x→0 (2q − 1)∆x/∆t

,diffusion coefficient
D = lim_∆t→0,∆x→0 (1/2)(∆x)^2/∆t

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10
Q

When c=0, there is no drift/convection

A

one-dimensional diffusion equation:

∂p/∂t = D ∂^2p/∂x^2

symmetric, no drift occurs

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11
Q

If initially the distribution is concentrated at x=0, i.e. [Dirac delta],
p(x, 0) = δ(x)
the pdf is the
fundamental solution of the 1D diffusion equation:
it is a Gaussian of mean zero and variance 2Dt

A

p(x, t) =
(1/√4πDt )exp(−x^2/4Dt)

it is a Gaussian of mean zero and variance 2Dt

integral_ -∞,∞ p(x, t)dx = 1

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12
Q

Similarly, for 1D convection-diffusion equation with initially ,
p(x, 0) = δ(x)

the pdf is
a Gaussian of mean ct and variance 2Dt:

A

E(X(t)) = ct,
var(X(t)) = 2Dt
⇒ Std(X(t)) = √var = √2Dt

p(x, t) =
(1/√4πDt )exp(−(x-ct)^2/4Dt)

General solution of the 1D diffusion equation, e.g., obtained by using Fourier transform (Appendix F)

mean also varies in time
this occurs due to drift

in general

sol of 1D diffusion can be obtained

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13
Q

If initially p(x,0)=f(x) given when c=0, the general solution of of the 1D diffusion equation is a convolution of f(x) and the Green function

A

p(x, t) = integral_{-∞,∞}
f(y) exp(−(x−y)^2/(4Dt))/√4πDt dy

we can use the 1D fundamental solution of BM with initial condition

because as linear we use the superposition method

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14
Q

The Brownian motion (with/without drift) is an
important example of diffusion process

A

By analogy with the Brownian motion, a generic diffusion process X(t) is defined by its first 2 jump moments, with ∆X(t) = X(t + ∆t) − X(t)
:

Drift coef.:
a(x, t) = lim∆t→0
(1/∆t) integral{-∞,∞}
(y−x) p(y, t+∆t; x, t)dy =
lim_∆t→0 (1/∆t)E (∆X(t)|X(t) = x)

diffusion coeff is b(x)/2

b(x, t) = lim∆t→0
(1/∆t) integral{-∞,∞}
(y − x)^2 p(y, t + ∆t; x, t)dy =
lim_∆t→0 (1/∆t) E(∆X(t))2|X(t) = x

and

lim_∆t→0 (1/∆t) integral{-∞,∞}(y − x)^n p(y, t + ∆t; x, t)dy =
lim_∆t→0 (1/∆t)
E ([∆X(t)]n and |X(t) = x) = 0 for n > 2

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15
Q

a and b meanings

A

a(x) is the “expected jump rate” or “first jump moment”, like c in the biased Brownian motion
b(x) is the “expected square jump rate” or “second jump moment”, like 4D in the Brownian motion If the diffusion process is time homogeneous (as in our course) a(x) and b(x) depend on x but not on t

a and b play role of C and D in BM
depend only on x and not on t

if i give you a process
you define a and b by limit of expectations

THEN
we can write the generators of the Fokker-Planck equations

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16
Q

10.3 Fokker-Planck equations

A diffusion process X(t) is defined by its two first jump moments:

Here, ∆X(t) ≡ X(t + ∆t) − X(t)

drift and diffusion coeffs

A

drift coefficient

a(x) = lim∆t→0 (1/∆t)E (∆X(t)|X(t) = x)

b(x) = lim∆t→0 (1/∆t) E[(∆X(t))^2|X(t) = x)

b(x)/2=diffusion coefficient

For concreteness, we assume that range of X(t) isS = R = (−∞, ∞)

16
Q

From the drift and diffusion coefficients, we define the forward and backward infinitesimal generators:

A

G_f(x) = − (∂/∂x)a(x) + (1/2)∂^2/∂x&2 b(x)
forward generator

G_b(x) = a(x) ∂/∂x+(b(x)/2)∂^2/∂x^2

(backward gen.)

17
Q

From the forward generator => di Gf ffusion-like PDE obeyed by the pdf of X(t) (evolution forward in time:

FORWARD FOKKER-PLANCK EQUATION:
(fFPE)

A

∂p(x, t)/∂t = G_f p(x, t) = − (∂/∂x) (a(x)p(x, t))
+ (1/2) ∂^2/∂x^2 (b(x)p(x, t))

drift term+diffusion term

fFPE to be supplemented with suitable boundary conditions (BCs)
On R, the BCs are often assumed to be p(x → ±∞, t) = 0 , which are called “zero-flux” BCs

here a and b used, useful with BCs

18
Q

eq of motion

A

m=E[X(t)

dm(t)/dt
=dE[X(t)]/dt
=integral_R x ∂_t p(x, t) .dx

where
∂_tp(x, t)
=−∂_x(a(x)p(x,t))+ (1/2) ∂_x ^2(b(x)p(x,t))

we work this out the partial deriv wrt time here

by integrating by parts and using BCs

19
Q

or first raw moment of X(t_

A

-integral_R x∂_x[a(x)p(x, t)] dx +
1/2 integral_R x∂_x ^2[b(x)p(x, t)] dx = · · · = E (a(X(t)))

will give the result

20
Q

lecture 2 missed

A

1 may?

see recording misses by me

21
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A
22
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A
23
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24
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24
Q

2 may review start I have skipped

A

skipped to talking about exam 25 minutes

25
Q
A
26
Q

EXAMINABLE

A

everything we have done bar optional

27
Q

L5

A

Applications of two-dimensional maps (host-parasitoid models)
- Model of ordinary differential equations exhibiting Hopf bifurcations (Holling response)
- Mutation-selection balance
- Iterated games
- Bimatrix games
- Recurrent and transient Markov chains; mean absorption time
- Detailed balance
- Gillespie algorithm; example of metastabilit

28
Q

L3

A
  • Introduction to evolutionary modelling
  • Modelling with difference equations
  • Modelling with ordinary differential equations
  • Introduction to Mendelian genetics
  • Introduction to game theory
  • Introduction to evolutionary game theory
  • Random processes: discrete and continuous time Markov chains
  • Evolutionary game theory in finite populations
  • Diffusion theory (Fokker-Planck equation)
  • Stochastic population genetics and diffusion theory
29
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A