02. Chemical and cellular basis of life Flashcards
How many elements are recognized in nature?
92 elements
How many elements are essential for human life?
~25 elements
How many elements are essential for plant life?
~17 elements
Name the four main elements in living matter
- Oxygen
- Carbon
- Hydrogen
- Nytrogen
Makes up 96% of living matter
Acronym : CHON
Which elements make up the most of remaining 4% of living matter (apart from C, H, O and N)?
- Calcium (Ca)
- Phosphorus (P)
- Potassium (K)
- Sulphur / Sulfur (S)
Which elements are contained in minute amounts in living matter?
- Sodium (Na)
- Chlorine (Cl)
- Magnesium (Mg)
- Boron (B)
- Cobalt (Co)
- Copper (Cu)
- Chromium (Cr)
- Fluorine (F)
- Iodine (I)
- Iron (Fe)
Give two reasons on why water is important for life
- Vital chemical constituent of living cell
- Provides a biological medium for all organisms
What are the characteristics of water molecule?
Small, polar and angular
What’s known as polarity?
An uneven charge distribution within a molecule
What’s a hydrogen bond in water?
Weak attractions between the slightly polar hydrogen atom of one molecule and the slightly polar oxygen atom of adjacent water molecule
What’s the bond angle of a water molecule?
104.5°
What type of bond plays major role in maintaining all the properties of water?
Hydrogen bonds (H-O)
What are the four major properties of water to maintain life on earth?
- Cohesive behavior
- Ability to moderate temperature
- Expansion upon freezing
- Versatility as a solvent
What’s known as cohesion in water molecules?
Attraction between water molecules due to hydrogen bonding
What’s known as adhesion in water molecules?
Attractions between water molecules and other substances
Give an example of using cohesion for life functions
Water and dissolved substances such as minerals are transported as a continuous column through xylem against gravity.
Give an example of using adhesion for life functions
Adhesion between water molecules and cell walls helps in conduction of water and dissolved materials.
Why does water have a high surface tension?
Due to cohesion between water molecules
In an aquatic system, upper surface water molecules are attracted by lower surface molecules and it forms a water film.
How does water’s ability to moderate temperature can help living organisms?
- Due to the high specific heat, water will function as a thermal buffer in living systems and aquatic bodies during temperature fluctuations.
- Due to the high heat of vaporization, with a minimum loss of water an organism can release much heat energy.
- Evaporation of sweat form human skin help to maintain body temperature at a constant level.
- Transpiration in plants helps to cool the plant body surface and prevent from becoming too warm in the sunlight.
At which temperature does water has the maximum density?
4°C
Water is good as a solvent due to its which characteristic?
Polarity
Which molecules and compounds can dissolve in water?
- Polor molecules (Glucose)
- Ionic compounds (NaCl)
- Molecules with both polar and ionic regions (lysozymes)
What are the main organic compounds of organisms?
- Carbohydrates
- Lipids
- Proteins
- Nucleic acids
Which factor is essential for solubility of the solutes?
Polarity
What’s the most abundant group of organic compounds?
Carbohydrates
What’s the elemental composition of carbohydrates?
- Carbon (C)
- Hydrogen (H)
- Oxygen (O)
Acronym : CHO
What’s the general formula of carbohydrates?
Cx(H2O)y
Name the three major groups of carbohydrates
- Monosaccharides
- Disaccharides
- Polysaccharides
Which corbohydrates are considered as sugars?
Monosaccharides and disaccharides
What’s simplest form of carbohydrates?
Monosaccharides
What’s the molecular formula of monosaccharides?
(CH2O)n
How many C atoms can be a part of a monosaccharide?
3-7
What are some characteristics of monosaccharides?
- Reducing sugars
- Water soluble
- Occur in crystalline form
Monosaccharides with 3 carbon atoms are names as?
3C - Triose
Give an example for triose sugars
Glyceraldehydes
(Phosphoglyceraldehyde is a derivative of triose)
Give an example for a monosaccharide with 4 carbon atoms
4C - Tetroses
Give an example for a monosaccharide with 5 carbon atoms
5C - Pentoses
Give an example for a monosaccharide with 6 carbon atoms
6C - Hexoses
Phosphoglyceraldehyde is a derivative of which type of monosaccharide?
Triose (Glyceraldehydes)
Give an example for a tetrose
Erythrose (rare in nature)
Give examples for monosaccharides related to pentose
- Ribose
- Deoxyribose
- Ribulose (RUBP)
RUBP is a derivative of which monosaccharide?
Ribulose
Give examples for hexoses
- Glucose
- Fructose
- Galactose
What’s a carbonyl group?
A carbon atom double bonded to an oxygen atom
A C=O bond
What are sugar types which are classified according to the type of carbonyl group?
Aldo - Alodoses
Keto - Ketoses
Keto and Aldo groups are types of which group?
Corbonyl C=O
What’s an aldehyde group?
A corbonyl group with the C atom attached to a H atom
What’s a keto group?
A carbonyl group in which the C atom is bonded to C atoms (not H)
Give some examples for sugars (monosaccharides*) which belong to aldoses
- Glucose
- Galactose
Give some examples for sugars (monosaccharides*) which belong to ketoses
Fructose
Some monosaccharides are in which form when in an aqueous media?
Ring form
How are disaccharides formed?
By joining two monosaccharides by a glycosidic bond
What’s a glycosidic bond?
Glycosidic bonds are covalent bonds that connect a sugar molecule to another molecule, such as another sugar or a non-sugar compound, through the linkage of their respective hydroxyl groups.
How’s a glycosidic bond is formed?
It’s formed by removal of a water molecule from two adjacent monosaccharides by a condensation reaction (dehydration synthesis).
Which disaccharide is formed by the condensation of two glucose molecules?
Maltose
Which disaccharide is formed by the condensation of glucose and fructose molecules?
Sucrose
Which disaccharide is formed by the condensation of glucose and galactose molecules?
Lactose
What are reducing sugars?
Reducing sugars are groups of sugars which have a free aldehyde group or a keto group, which can reduce other compounds.
Give examples for reducing sugars
- Glucose
- Fructose
- Galactose
- Maltose
- Lactose
(basically all the example that were in grade 10 text book except for sucrose)
Give an example for a non-reducing sugar
Sucrose
sucrose doesn’t have a free aldo/keto group
Which type of carbohydrates are macromolecules and biopolymers?
Polysaccharides
What are the characteristics of polysaccharides?
- Non-crystalline
- Water insoluble
- Not considered as sugars
What are the functions of polysaccharides in living organisms?
- Functioning as a storage component
- Contributing to the structure of living organisms
Polysaccharides which facilitate to the structure of living organisms are known as?
Structural polysaccharides
Polysaccharides which acts as a storage component are known as?
Storage polysaccharides
Name few storage polysaccharides
Starch, Glycogen
Name structural polysaccharides
Cellulose, Hemicellulose, Pectin
What are the two forms of polysaccharides based on their structure/ architecture?
- Linear forms
- Branched forms
Give some examples for linear forms of polysaccharides
Cellulose, Amylose
Give some examples for Branched forms of polysaccharides
Glycogen, Amylopectin, Hemicellulose
What’s the monomer of starch?
Glucose
What’s the monomer of glycogen?
Glucose
What’s the monomer of cellulose?
Glucose
What’s the monomer of inuline?
Fructose
What’s the monomer of pectin?
Galacturonic acid
What’s the monomer of hemicellulose?
Pentose and hexoses
What’s chitin?
It’s a nitrogen containing polysaccharide
What’s the monomer of chitin?
Glucosamine
What’s the function of starch?
Storage of foods in plants
What’s the function of glycogen?
Storage of food in animals and fungi
What’s the function of cellulose?
Component of cell wall
What’s the function of inuline?
Food storage in tubers of dhalia
What’s the function of pectin?
Component of middle lamella of plant cell wall
What’s the function of hemicellulose?
Component of plant cell wall
What’s the function of chitin?
Component of fungal cell walls and exoskeleton of arthropods
Name polysaccharides which are responsible for the structure of plant cells
Cellulose, Hemicellulose, Pectin
What are the functions of monosaccharides?
- Energy source
- Building blocks of disaccharides and polysaccharides
- Components of nucleotides
What are the functions of disaccharides?
- Storage sugar in milk - Lactose
- Translocation in phloem - Sucrose
- Storage sugar in sugarcane - Sucrose
Which carbohydrate is responsible for food storage in milk?
Lactose
Which carbohydrate is associated with translocation in phloem?
Sucrose
Which carbohydrate is associated with storage of food in sugarcane?
Sucrose
Name some functions of storage polysaccharides
- Storing glucose as energy source in plants and chlorophytes - Starch
- Storing glucose as energy source in plants and fungi - Glycogen
- Storing fructose as energy source in Dhalia tubers - Inuline
What are the functions of structural polysaccharides?
- Cellulose in the cell walls of plants and chlorophytes
- Hemicellulose in cell walls of plants
- Pectin in the middle lamella of plant tissues
- Chitin in cell walls of fungi and in exoskeleton of arthropods
What are the characteristics of lipids?
- Diverse group of hydrophobic molecules
- Large biological mecules but not considered as polymers or macromolecules
- Consist of C, H, O and H:O ratio is not 2:1. Comparatively more H than O are present
Give examples for biologically important types of lipids
Fats, Phospholipids and Steroids
What are the components of fat?
Glycerol and fatty acids
Which chemical group does glycerol belong to?
Alcohol
Explain the structure of a glycerol molecule
Glycerol has 3 carbon atoms where each of them is bonded to a hydroxyl group
Explain the structure of fatty acids
Fatty acids are hydrocarbon chains with long carbon skeleton with a carboxyl group at its one terminal
How many carbon atoms are in a fatty acid molecule?
Usually 16-18
By which bond does fatty acid bind to each hydroxyl group of glycerol?
Ester bond
What’s the resulting fat molecules are called by the bonding of glycerol and 3 fatty acids?
Triacylglycerol (Triglycerides)
Which component contribute to the hydrophobic nature of fats?
Non-polar hydrocarbon chains of fatty acids
What are the two types of fats based on the nature of hydrocarbon chains?
- Saturated fats
- Unsaturated fats
What are saturated fats?
Fats which are made up of saturated fatty acids with hydrocarbon chains having no double bonds
Which fats come under saturated fat category?
Animal fats
Saturated fats are […] at room temperature
Solid
What are unsaturated fats?
Fats which are made up of unsaturated fatty acids with hydrocarbon chains having one or more double bonds
Give an example for unsaturated fat
Plant oils
Unsaturated fats are mostly […] in room temperature
Liquid
What are the two types of unsaturated fats, based on the nature of their double bonds?
- Cis unsaturated fats
- Trans unsaturated fats
Excess consumption of which fats are contributing to atherosclerosis?
Saturated fats and trans unsaturated fats
Phospholipids are major components of which part of the cell?
Cell membrane
Phospholipids are composed of?
Glycerol, 2 fatty acids, phosphate group + additional polar molecule ie. Choline
Which part gives a negative charge to the phospholipid molecule?
Phosphate group
Which part of the phospholipid is hydrophilic?
Phosphate group and it’s attachment (head)
Which part of the phospholipid is hydrophobic?
Hydrocarbon tails
What are the functions of lipids?
- Food reserve as an energy source
- Found as components of cell membrane
- Maintain the fluidity of plasma membrane
- Act as signaling molecules that travel through body
Which type of lipids are responsible for storing food?
Triacylglycerols such as fats and oils
Which types of lipids are responsible for maintaining the fluidity of plasma membrane?
Phospholipids and cholesterol
Which lipids are found as a component of cell membrane?
Phospholipids and cholesterol
Which type of lipids act as a signaling molecule?
Hormones
What’s the monomer of proteins?
Amino acids
How many unique amino acids are involved in protein formation?
20
What’s the elemental composition of proteins?
- Carbon
- Hydrogen
- Oxygen
- Nitrogen
- Sulfur
Acronym : CHONS
What’s at the center of the amino acid?
An asymmetric carbon atom
Which amino acid does not have an asymmetric carbon atom at the center?
Glycine
What are the components of an amino acid?
Asymmetric carbon atom, an amino group, a carboxyl group, a hydrogen atom and a variable group (side chain) symbolized by “R”
What’s the R group of glycine?
A hydrogen atom
What’s the R group of an amino acid?
Side chain (Differs with each amino acid)
What’s the backbone of an amino acid?
All the other components except for the R group
Amino acids may have one or more […] and […]
Carboxyl groups
Amino groups
Amino groups has […] nature
An alkaline
Carboxyl group is […] in nature
Acidic
What’s the term refered to molecule which have both alkaline and acidic nature?
Amphoteric molecules
Amino acids are […] in nature
Amphoteric
What’s the bond which forms between amino acids?
Peptide bond (C—N)
Which type of reaction amino acids undergo to create a peptide bond?
A condensation reaction (dehydration synthesis)
removes a water molecule
Protein is composed of one or more […] which are composed of […].
Polypeptide chains
Amino acids
What are the levels of protein structure?
- Primary structure
- Secondary structure
- Tertiary structure
- Quaternary structure
What’s known as the primary structure of proteins?
The unique sequence of linearly arranged amino acids linked by peptide bonds
What’s known as the secondary structure of proteins?
Further folding and coiling of the primary structure of a single polypeptide chain
What’s causes the secondary structure of proteins?
Intramolecular hydrogen bonds between the oxygen atoms of the carboxyl groups and hydrogen atoms of the amino groups of the same polypeptide chain backbone
Name the two types of secondary protein structure
- Alpha helix
- Beta pleated sheet
Give an example for alpha helix type of secondary protein structure
Keratin
Give an example for beta pleated sheet type of secondary protein structure
Spider’s silk fiber
What’s the tertiary structure of proteins?
Usually the secondary polypeptide chain bends and folds extensively forming a precise compact, unique, functional and three-dimensional shape
Interactions between […] of amino acids causes the tertiary structure of proteins
Side chain/ R-group
What are the interactions between side chain/ R-group that results in tertiary structure?
- H bonds
- Disulfide bonds
- Ionic bonds
- Hydrophobic interactions and Van Der Waals interactions
Give examples for the tertiary structure of proteins
- Most of the enzymes
- Myoglobin
- Albumin
What’s the quaternary structure of proteins?
Aggregation of two or more polypeptide chains involve in the formation of one functional protein (tertiary structure)
What’s the term refered to separate chains of the tertiary structure of proteins?
Protein subunits
In the tertiary structure of proteins, subunits are held together by […] interactions
Inter and intra-molecular
Give examples for the quaternary structure of proteins
Hemoglobin, Collagen
What are the protein subunits related to adult human RBCs?
- 2 alpha subunits
- 2 beta subunits
- Heme group in each of the alpha & beta subunits
- Fe ion in the middle of heme groups
What’s known as the denaturation of proteins?
The loss of specific three dimensional shape due to the alteration of weak chemical bonds and interactions
What are the agents affecting denaturation of proteins?
- High temperature and high energy radiation
- Strong acids alkaline and high concentration of salts
- Heavy metals
- Organic solvents and detergents
What’s the function of catalytic proteins?
Catalyzing biochemical reactions
Give examples for catalytic proteins
Pepsin, amylase
What’s the function of structural proteins?
- Preventing desiccation
- Providing strength and support
Give examples for structural proteins
Keratin, collagen
What’s the function of storage proteins?
- Storage protein in egg
- Storage protein in milk
Give examples for storage proteins
Ovalbumin, Casein
What’s the function of transport proteins?
- Transport O2 and CO2
- Transport fatty acids
Give examples for transport proteins
Hemoglobin, serum albumin
Write a function of proteins which act as a hormone
Regulating blood glucose level
Give examples for proteins which function as a hormone
Insulin, Glucagon
Write a function of contractile/motor proteins
Contraction of muscle fibers
Gve examples for contractile/motor proteins
Actin, myosin
What’s the function of defensive proteins?
Neutralizing foreign bodies
Give an example for a defensive protein
Immunoglobulins (Antibodies)
Give examples for proteins which catalyzes biochemical reactions
Pepsin, Amylase
Give an example for a protein which functions to prevent desiccation
Keratin
Give an example for a protein which provides support and strength
Collagen
Which protein functions as the storage protein in egg?
Ovalbumin
Which protein functions as the storage protein in milk?
Casein
Which protein is responsible for the transmission of O2 and CO2?
Hemoglobin
Which protein is responsible for transporting fatty acids?
Serum albumin
Which proteins function to contract muscle fibres?
Actin, Myosin
What are nucleic acids?
Polymers which exist as polynucleotides made up of monomers called nucleotides
What’s the monomer of nucleic acids?
Nucleotide
What’s the elemental composition of nucleotides?
- Carbon
- Oxygen
- Hydrogen
- Nitrogen
- Phosphorus
Acronym : CHONP
Nucleic acids are […] and […].
Biopolymers, macromolecules
Whata re the two types of nucleic acids?
DNA and RNA
What does DNA stand for?
Deoxyribo Nucleic Acid
What does RNA stand for?
Ribonucleic Acid
What are the components of nucleotides?
- Phosphate group
- Pentose sugar
- Nitrogenous base
What’s the term used to refer nucleotides without a phosphate group?
Nucleoside
Give examples for nucleosides
Adenosine, Guanosine
What are the two types of pentose sugar?
Deoxy Ribose & Ribose
What’s the difference between deoxyribose and ribose?
In deoxyribose, one oxygen atom is less than in ribose
What are the two major groups of nitrogenous bases?
- Purines
- Pyrimidines
What’s the characteristic of purines?
Larger in size with two rings
What’s the characteristic of pyrimidines?
Smaller in size with a single ring
Give examples for purines
Adenine, Guanine
Give examples for pyrimidines
Thymine, Cytosine, Uracil
Which component of nucleotide is responsible for it’s acidic nature?
Phosphate group
What’s the bond between nucleotides in a polynucleotide chain?
Phospho-di-ester bond
How does the phospho-di-ester bond form polynucleotides?
By condensation between the -OH of the phosphate of one nucleotide and the -OH attached to the 3rd carbon of pentose sugar of the other nucleotide
What’s the linear polymer of nucleotides?
Nucleic acids
The type of the nucleotide is dependent upon it’s which component?
By the type of sugar molecule
What are the nitrogenous bases related to DNA?
Adenine (A)
Thymine (T)
Guanine (G)
Cytosine (C)
What are the nitrogenous bases related to RNA?
Adenine (A)
Uracil (U)
Guanine (G)
Cytosine (C)
In RNA, there’s Uracil (U) instead of Thymine (T)
Which model explains the structure of DNA molecule?
Watson and Crick model
Why do DNA molecule have a double helix shape?
Because DNA molecules have two anti-parallel polynucleotide chains that spiral around an imaginary axis
Why does the arrangement of DNA molecule is referred to as anti-parallel?
Because the two sugar-phosphate backbones run in opposite direction of each other
How the two strands of DNA is held together in it’s double helix shape?
By hydrogen bonds between the paired nitrogen bases