Wk2 - Neuroscience Methods and Techniques Flashcards
Name 3 haemodynamic methods
MRI, fMRI, PET
Name 2 electrophysiological methods
Single-cell recording
EEG
What type of methods have superior spatial resolution?
Haemodynamic methods
What types of methods have superior temporal resolution?
Electrophysiological methods
Define spatial resolution
How much detail you can see? E.g., can you see brain differences at a neuron level or a synaptic level? Or can you only see what large portions of the brain are doing?
Define temporal resolution
How much time definition can you see? Can you see changes in the brain going on from millisecond to millisecond? Seconds? Minutes? Hours? Days?
How fast does the action potential occur?
1 millisecond
Why do haemodynamic methods have poor temporal resolution?
Because methods such as fMRI looks at blood flow. It takes a while for an area of the brain to use blood and have more blood going there. This doesn’t happen quickly.
What does fMRI measure?
Measures concentration of oxygen in the blood
What measurement is used to report the oxygen level in the blood that is picked up by fMRI?
BOLD contrast
What does BOLD stand for?
Blood oxygen level dependent
What property differences between oxygenated and deoxygenated blood?
Their magnetic properties
What does a strong BOLD signal indicate?
Areas of the brain that have more oxygenated blood going to them
What does a lower BOLD signal indicate?
Deoxygenated blood
What does blue on an fMRI image indicate? (3)
Deoxygenated blood
Lower BOLD signal
Less activity
What does red/yellow on an fMRI image indicate?
Oxygenated blood
Higher BOLD signal
More activity
Explain the 3 assumptions of fMRI
If a brain area is working harder, it will use up more blood and demand more blood.
This greater demand for oxygenated blood is indicated by a stronger BOLD signal.
Greater activity occurs in the more oxygen-rich region.
In a visual experiment, where would you expect to see a higher BOLD signal and why?
Visual cortex
Visual cortex will have used up the blood and will demand more oxygenated blood to go to it
Is fMRI a direct measure of brain activity?
No
fMRI looks at the indirect consequence of brain activity (the demand for oxygenated blood)
Does fMRI have high or low spatial resolution?
High
Does fMRI have high or low temporal resolution?
Low - changes in blood flow don’t occur rapidly
What does fMRI stand for?
Functional magnetic resonance imaging
Does fMRI measure changes in brain activity or changes in brain structure?
Changes in brain activity
How is oxygen carried in the blood?
By haemoglobin
What are the 2 types of haemoglobin?
Oxyhaemoglobin
Deoxyhaemoglobin
What type of haemoglobin has the stronger magnetic resonance signal?
Oxyhaemoglobin
Using fMRI how can we tell which parts of the brain are more active?
The more active brain regions would have used up more oxygen. These areas would therefore have more oxygenated blood going to them, thus giving a strong BOLD signal
What biological processes happen when a brain area is active?
Levels of oxyhaemoglobin will first decrease.
Deoxyhaemoglobin will increase because this brain area is using the oxygen.
The vascular system increases the flow of oxygenated blood to the area.
How does the BOLD signal work?
Shows us the amount of oxygenated blood compared to deoxygenated blood in areas of the brain to tell us which areas of the brain are more active
What type of image does an fMRI produce?
T2-weighted image
How can you recognise a T2-weighted image?
White matter = grey
Grey matter = white
Cerebrospinal fluid = bright white
What mechanism produces a T2 weighted image?
Relaxation of proton spin
What does MRI stand for?
Magnetic resonance imaging
Briefly, what does MRI do to hydrogen protons?
Artificially excites hydrogen protons and then measures their relaxation properties over time
Are electric and magnetic fields parallel or perpendicular?
Perpendicular
How is a magnetic field produced in MRI?
Current passes through electric coils which surrounding a patient in a clockwise rotation
Electric current produces a magnetic field longitudinal to the subject (from feet to head)
Where are hydrogen protons found?
Neural tissue
Fluids and organic compounds of the brain and body
How do protons spin?
Protons spin on an axis with a spinning positive charge (+1).
The positive charge moves from side to side.
What is the proton spin called?
Precess
How does the strength of the magnetic field affect the precession (spin) of the protons?
Strong magnetic field = faster spin
How do protons orientate normally?
The magnetic fields of individual protons normally orientate in random directions, with the positive and negative charges cancelling each other out
What happens if we put the protons into a larger magnetic field?
The protons will align with (become parallel to) the magnetic field created by the electric foils, orientating towards the subject’s head and feet
When protons are in this aligned state, what is applied?
A brief radiofrequency pulse
What does the radiofrequency pulse do?
Excites the protons
Knocks the orientation of the protons by 90 degrees so that they produce a change in the magnetic field
Creates a small magnetic field transverse to the subject
Synchronises proton spinning so that they precess in phase
What happens when the radiofrequency pulse stops?
The protons will relax back into their initial alignment along the longitudinal magnetic field
The protons return to precessing out of phase
What is the T1 relaxation time?
The time for the protons to relax and return to their original alignment
Can the T1 relaxation time vary?
Yes, the rate at which protons return back to their relaxed, aligned state depends on what type of tissue the protons are in
What are T1-weighted images used for?
Structural images of the brain
How can you recognise a T1-weighted image?
White matter = white
Grey matter = grey
Cerebrospinal fluid = black
What happens when protons precess in phase?
Increases the net magnetisation in that direction because the positive charges no longer cancel each other out
What is the T2 relaxation time?
The variation in the rate at which protons return back to their out-of-phase state following the radiofrequency pulse
Can the T2 relaxation time vary?
Yes, protons in different matter/types of tissue take different amount of times to go back out-of-phase
What are T2-weighted images used for?
Functional images of the brain
How are axial, sagittal, and coronal slices produced?
The MRI scanner sends radiofrequency pulses from different electric coils at different directions to excite protons at different slices
What are voxels?
3D cubic pixels that make up MRI images
What are the very small measures of brain that are used in MRI?
Voxels
What does the X coordinate of the voxel tell us?
How medial or lateral the voxel is
What does the Y coordinate of the voxel tell us?
How close to the front or back of the brain the voxel is
What does the Z coordinate tell us?
The depth/how dorsal or ventral the voxel is
What does PET stand for?
Positron emission tomography
What does PET involve?
Injection of a radioactive tracer into a biologically active molecule which travels around the blood
What sort of rays does the tracer produce?
Gamma rays
What does the gamma camera do?
Measures the gamma rays to show the concentration levels of the tracer in the blood
Is PET invasive?
Yes
Is PET safe?
Yes
Does PET have a high or low temporal resolution?
Low temporal resolution because we are talking about blood flow
What are 3 limitations of PET?
Invasive
Need shorter testing sessions so that the isotope doesn’t run out by the end of the testing session.
Participants can only be scanned once because it involves the injection of radioactive material.
What is an advantage of PET?
Can measure the metabolism of different kinds of substrates
What are the 2 most common tracers used in PET?
Oxygen-15
Fluorine-18
How is oxygen-15 administered?
In the form of water
How is fluorine-18 administered?
In the form of glucose
Using PET, how can we tell which areas of the brain are more active?
Active areas will have greater blood flow, thus will emit a greater signal by the tracer.
The area which more glucose is going to is more active because it needs more energy from the glucose
Is PET or fMRI used more and why?
fMRI is more commonly used because fMRI is more practical and gives more information
How does the tracer in the bloodstream produce gamma photons?
The tracer converts from the unstable radioactive form back to the normal stable form
This emits a positron particle that then collides with an electron to release 2 gamma photons
What detects gamma photons?
Detectors which are positioned around the head
Does PET or fMRI have better temporal resolution?
fMRI
Can you see causation or correlation with brain imaging techniques?
Correlation
We can measure brain activity which correlates with a particular task (neural correlate) but we cannot say that the task definitely causes the activity
Can you see causation or correlation with brain stimulation techniques?
Causation
What are 4 types of brain stimulation techniques?
Deep brain stimulation
TMS
tDCS
Optogenetics
How does DBS work?
An internal pulse generator (pacemaker) is implanted under the skin by the clavicle
Pacemaker sense electrical pulse to electrodes in the brain that are implanted in the exact-to-be-stimulated brain region
What are 4 advantages of DBS?
Fully reversible
Precise localisation
Few side-effects complications
Can be effective for Parkinson’s disease, chronic pain, depression, and OCD
What are 2 disadvantages of DBS?
Invasive
Can have severe side-effects/complications
What does TMS stand for?
Transcranial magnetic stimulation