What is a Drug? Flashcards
what are drugs?
a compound that interacts with a biological molecule, triggering a physiological effect.
what are a few examples of drugs?
morphine, snake venom, herion, LSD, caffeine, penicillin, sugar
what defines a ‘good drug’?
good drugs should do what they are meant to do
what does morphine do?
pain relief, but can kill you
what does LSD do to you?
cause hallucinations
what does caffeine do to you?
wakes you up
what does penicillin do?
kills bacterial cells
what does sugar do as a drug?
is a sense of taste
what can drugs be viewed as?
can be viewed as actual or potential poisons
what is selective toxicity?
many drugs are effective as they are toxic to ‘problem cells’ but not normal cells
what is therapeutic index?
measure of a drug’s beneficial use at a low dose, compared to its harmful effects at a high dose
is a higher or lower ratio better for a drug’s therapeutic index?
higher ratio (beneficial use at a low dose:harmful effects at a high dose)
is a higher or lower ratio better for a drug’s therapeutic index?
higher ratio (beneficial use at a low dose:harmful effects at a high dose)
why should drugs work?
- the human body is a ‘chemical factory’ (made up of chemicals)
- drugs enter a system with chemical systems which they interact with
how can drugs have such specific effects?
a result of where they act in the body - drug targets
what are drug targets?
a molecule in the body that is associated with a particular disease process which can be addressed by a drug to produce a desired therapeutic effect
what must drugs act on?
since life is made of cells, drugs must act of cells
what do different drugs act on?
different drugs act on different locations of the cell
what are the chemicals in cells?
lipids, carbohydrates, proteins and nucleic acids
what are proteins?
- compounds composed of carbon, hydrogen, oxygen and nitrogen
- arranged as strands of amino acids
what are nucleic acids?
naturally occurring chemical compounds that serve as the primary information-carrying molecules in cell
what role do nucleic acids play?
directing protein synthesis
what are the two main types of nucleic acids?
DNA & RNA
what are the two main types of nucleic acids?
DNA & RNA
what makes a molecule a macromolecule?
molecular weight in the 1000s of atomic mass units (amu)
what is the process called when drugs interact with a macromolecular target?
binding
what is binding?
the process of when a drug interacts with a macromolecular target
what is a binding site?
a specific area of macromolecule where binding takes place
what form does a bindng site usually take?
form of a hollow or canyon
what bonds are involved during binding?
intermolecular bonding
what occurs during binding?
equilibrium takes place between the drug being bounded and unbounded
what are binding groups?
functional groups present in the drug important for forming intermolecular bonds with the binding site
what are binding regions?
functional groups present in the target (to bond with the binding groups of the drug)
what is the strongest bond in binding?
ionic bonds
where do the ionic bonds form during binding?
takes place between groups having opposite charges
are ionic bonds stronger in hydrophobic or hydrophilic?
hydrophobic environment
what is the most important initial interaction as the drug enters the binding site?
the ionic bonding!!
how do hydrogen bonds occur during binding?
normally takes place between an electron-rich heteroatom and an electron (deficient hydrogen)
what two things are essential in hydrogen bonding during binding?
- hydrogen bond donor
- hydrogen bond acceptor
what are the two key classes of functional groups for hydrogen bonding?
- HBA
- HBD
what does HBA refer to in key functional groups for hydrogen bonding?
- carboxylates
- phosphates
- ethers
- alcohols
- amides
- amines
- ketones
what does HBD refer to in key functional groups for hydrogen bonding?
- ammonium ions
- amines
- alcohols
what are the weakest bondings in binding?
van der waals and hydrophobic interactions
where do van der waals and hydrophobic interactions occur?
between 2 hydrophobic regions
what is the strength of van der waals and hydrophobic interactions influenced by?
distance between the molecules
what distance is optimal between the drug and binding site to work?
as close as possible for it to be important
why are van der waals and hydrophobic interactions important, even though they are weak?
there are so many of these interactions that their overall contribution can be significant
what shape are sp^3 hybridised carbons?
tetrahedral
how many bonds do sp^3 hybridised carbons have?
4 single bonds
when drawing a 3-D molecule, are dashed bonds in front or behind the page?
behind
when drawing a 3-D molecule, are wedged bonds in front or behind the page?
in front
what is an important factor to a molecules reactions and properties?
its shape!
what is shape of a molecule dependent on?
- bond angles
- bond lengths
what is hybridisation of atoms in a molecule?
concept of mixing atomic orbitals to form hybrid orbitals
what orbitals does sp^3 consist of?
- one ‘s’ orbital
- three ‘p’ orbitals
what shape does the ‘s’ orbital take?
spherical shape
what shape does the ‘p’ orbital take?
dumbbell shape
how many orientations of the ‘p’ orbital are there?
three
what are the three orientations of the ‘p’ orbital?
- x-axis (Px)
- y-axis (Py)
- z-axis (Pz)
which way does Px point?
behind page to front of page
which way does Py point?
left to right
which way does Pz point?
up to down
how does sp^3 form a tetrahedral shape?
sp^3 hybrid orbitals have the large lobe of each orbital pointing towards a vertex of a tetrahedron
what is the molecular shape of CH4?
tetrahedral
what is the molecular shape of NH3?
trigonal pyramidal
what is the molecular shape of water?
bent
how does CH4 have a tetrahedral shape?
overlapping of four sp^3 orbitals
what are isomers?
molecules with the same formula but different atom connections
what is an example of isomerism?
butane & 2-methylpropane
why is structural formulae preferred?
molecular formulae is inadequate when there are isomers!
what is affected by isomerism?
both physical and chemical properties
what are the two types of isomers?
- structural isomers
- stereoisomers
what are structural isomers?
isomers with different order of attachment of atoms in their molecules
what are stereoisomers?
isomers with the same order of attachment of atoms in their molecules, but different orientation of their atoms/groups in space
what are structural isomers also known as?
constitutional isomers
what does structural isomerism cause?
different physical and chemical properties
what are examples of structural isomers?
2-methylpentane, 3-methylpentane and 2,3-dimethylbutane
all are C6H14
what is functional group isomerism?
when structural isomers have different functional groups
what is an example of functional group isomerism?
ketones and aldehydes
what are enantiomers?
a stereoisomer that is non-superimposable with its mirror image
what does non-superimposable means?
can be distinguished from one another (not an exact mirror image)
what does chiral mean?
an object which is non-superimposable with its mirror image
what does it mean to be achiral?
symmetrical - superimposable
what is plane of symmetry?
an imaginary plane passing through an object dividing it such that one half is the mirror image of the other half
how can you test for chirality?
does the object posses a plane/s or symmetry?