Week 6 - Chemoorganotrophy and fermentation Flashcards
Chemoorganotrophs
energy, electrons, and carbon all obtained by breaking down organic compounds
Chemoorganotrophs found wherever
there is a supply of organic compouds
tend to predominate wherever
a. there is a supply of organic compounds plus oxygen
b. there is a supply of organic compounds and no light (whether oxygen is present or not)
Examples of chemoorganotroph habitats
• soil (if light tends to be aerobic, in anaerobic is usually also dark)
• ocean sediments
• our bodies
eg on the skin (plenty of organic compounds, oxygen)
in our guts (may be anaerobic, but also dark)
All significant pathogens are
chemoorganotrophs
Glycolysis
the Embden-Meyerhof pathway
Glucose + 2ADP + 2 Pi + 2NAD+
–>
2 pyruvate + 2ATP + 2 NADH + 2H+
Glycolysis is common to
respiratory and fermentative metabolism
Glycolysis overall production
2 ATP and 2 NADH per glucose molecule
Significant further oxidation of pyruvate also requires
an electron acceptor - eg oxygen
• in the absence of an electron acceptor == fermentation
Fermentation is basically a way of
removing excess carbon and electrons in the cell
Because of the small amount of energy released by glycolysis
not all the carbon and electrons can be used for anabolic reactions
Examples of fermentation
lactic fermentation
• Streptococcus
• Lactobacillus
ethanolic fermentation
• yeasts
• some bacteria
Lactic fermentation
pyruvate –> lactate
NADH –> NAD+
Ethanolic fermentation
pyruvate –> acetaldehyde
gives off CO2
acetaldehyde –> ethanol
NADH –> NAD+
Other fermentation pathways lead to production of
Propionic acid
• Propionibacterium
Butanediol
• Enterobacter
Butyric acid etc
• Clostridium
Acetic acid + formic acid + ethanol
• many enteric bacteria
Many of the classic tests for bacteria are based on
fermentation products
Fermentation is NOT THE SAME AS
anaerobic respiration
In aerobic respiration
pyruvate is oxidized further
eg the tricarboxylic acid cycle (aka citric acid or Krebs cycle)
Tricarboxylic acid cycle
aka citric acid or Krebs cycle
pyruvate is oxidized further
Pyruvate + 4NAD+ + FAD
–>
3CO2 + 4NADH + FADH
1 ATP formed
After the tricarboxylic acid cycle
the NADH and FADH are re-oxidized by the respiratory electron transport chain - located in the plasma membranes of aerobically growing bacteria
eg
2 NADH + O2 + 2H+
–>
2NAD+ + 2 H2O
For every NADH oxidized
up to 3 molecules of ATP formed
For every FADH oxidized
up to 2 molecules of ATP formed
For every glucose molecule oxidized
38 molecules of ATP form
2 ATP/glucose from fermentatin
glycolysis makes pyruvate
pyruvate through fermentation OR
pyruvate oxidized futher (aerobic respiration - tricarboxylic acid cycle / Krebs / citric acid cycle)
Examples of chemoorganotrophs
- E. coli
- Pseudomonas sp.
- Streptococcus pyogenes
- Mycobacterium tuberculosis
- Bdellovibrio
E. coli is
a gram negative eubacterium
• motile - flagella enable it to swim toward food sources
• able to live on a range of sugars etc - aerobic metabolism on the presence of oxygen, but switches to fermentation when oxygen is scarce
E. coli’s natural habitat is
in the colon of animals
• an enterobacterium
• also found in sewage-polluted water, contaminated food, etc
E. coli’s activities in the colon
• converts food nutrients into bacterial biomass
• uses oxygen - maintains anaerobic conditions in the lower colon
• produces vitamin K
• may cause disease (occasionally fatal)
- diarrhoea
• septicaemia
• urinary tract infection
Pathogenic strains of E. coli
produce toxins and often have fimbrae
• eg strains responsible for traveller’s diarrhea have genes coding for 2 polypeptide toxins, and genes coding for adhesive fimbrae that allow colonization of the small intestine
E. coli –>
diarrhoea
Infectious diarrhoea
- 3-5 billion episodes yearly
- major cause of worldwide morbidity and mortality
- 5 million deaths yearly - 80% are <1 year old
- major cause of school/work absenteeism
- major economic burden, especially in developing countries
- bacteria cause 80% of foodborne diarrhoea
Infectious diarrhoea
organisms
Bacteria
• E. coli, Salmonella, Campylobacter, Vibrio, Yersinia, Clostridium difficle, S. aureus, B. cereus, C. botulinum
Viruses
• Norovirus, Rotavirus, CMV
Parasites
• Giardia, Amoeba, Ascaris
These organisms cause diarrhoea through a wide variety of mechanisms
pathophysiology • osmotic • secretory • exudation • abnormal motility
Daily intake and endogenous secretions are
efficiently absorbed by the gastrointestinal tract
Osmotic diarrhoea
increased amounts of poorly absorbed, osmotic active solutes in gut lumen
• interferes with absorption of water
• solutes are ingested (FASTING STOPS DIARRHOEA)
- magnesium sulfate, citrate, or magnesium containing antacids
- sorbitol
- malabsorption of food (variety of infectious organisms, particularly viruses but including E. coli)
Secretory diarrhoea
excess excretion of electrolytes and water across mucosal surface
• usually coupled with inhibition of absorption
• clinical features
- stool is very watery
- stool volume large
FASTING DOES NOT STOP DIARRHOEA
Diarrhoea associated with active secretory processes (secretory diarrhoea) can be caused by stimuli from 3 sources
- mucosal/submucosal stimuli
- blood hormone stimuli
- liminal stimuli
Secreotry diarrhoea (organisms)
bacterial or viral enterotoxins • Vibrio cholerae • Noncholeraic vibrios • enterotoxigenic E. coli • B. cereus • S. aureus • others: Rotavirus, Norovirus
Exudative diarrhoea
- intestinal or colonic inflamed and ulcerated
* the extent and location of bowel involved determines severity
Common syndromes of infectious diarrhoea
• food poisoning • acute watery diarrhoea - travelers diarrhoea - epidemics • acute bloody diarrhoea - dysentery
Special circumstances
- outbreaks/food poisoning
- overseas travel
- immunocompromised host
- raw seafood ingestion
- antibiotic usage
E. coli O157:H7
1982 - first recognized as a pathogen
1985 - associated with hemolytic uremic syndrome
1990 - outbreak from drinking water
1991 - outbreak from apple cider
1993 - multi-state outbreak from fast food hamburgers
1995 - outbreak from fresh produce
1996 - outbreak in Japan, multi-state outbreak from unpasteurized apple juice
E. coli 0157
petting zoos
E. coli 0157 case history
- onset and duration of diarrhoea
- timing of exposure to potential pathogens: travel, ingestion history, environment, recent medications (antibiotics), age
- character of stool: volume, presence of blood, mucus, or pus
- associated symptoms and signs: abdominal pain, fever, vomiting, dehydration