Week 6 Flashcards
Innate immunity fundamental
Only a limited number of receptors for specific pathogen products (Toll-like receptors/NOD/RIG-I like helicases)
No specific memory generated
However, the innate response is immediate and does not require previous exposure to the pathogen for an effector response
Innate and adaptive immune systems work together to provide immunity
The adaptive immune response
Allows exquisite recognition of wide range of varying pathogens
A memory population of cells is created that can respond more rapidly, specifically and efficiently to subsequent infections
The response to a primary infection is relatively slow (days)
Upon re exposure the adaptive response rapid and efficient (principle of vaccination)
Cells of the adaptive immune system recognise specific pathogen antigens
Antigens are molecules that induce an immune response through the activation of antigen specific lymphocytes
Many different structures can act as antigens
-proteins, DNA, lipids, carbohydrates
The innate and adaptive immune responses
Do not occur in isolation
The adaptive response is highly dependent on activation of the innate response (eg activation dendritic cells that prime Naive T cells)
Key differences between T and B cells
B cells recognise antigen in its native conformation
T cells recognise fragments of antigens- e.g. peptide sequences presented on major histocompatibility complexes
Basic structure of antibody molecule
2 heavy chains and 2 light chains
Hinge region -flexibility allows for binding to antigen of different spacing
Antigen binding site on light chains
Hyper variable regions found at sites of antigen binding
Response of B lymphocytes to antigen binding
Antigen recognition
Activation of B lymphocytes
Proliferation
Differentiation
Outcome: antibody secretion, isotype switching, affinity maturation, memory B cell
NB: some B cells can respond to repetitive antigens mounting a T cell independent response
Antigens adaptive immune response
Cells of the adaptive immune system recognise specific antigens
Antigens are molecules that induce a immune response through activation of antigen specific lymphocytes
Many different structures can act as antigens
But for T cells this must be peptide (from protein) in the context of MHC (major histocompatibility complex)
T cell receptor
Resembles a membrane bound FAB fragment
Expression on the surface of T lymphocytes
CD8 and CD4 interact with class I and II MHC respectively
2 main classes of MHC:
-MHC class I: HLA, A, B &C
-MHC class II: HLA DR, DP &DQ
HLA= human leukocyte antigen, human version of MHC
CD8 T cells: very important for intracellular infections and viruses, they recognise peptide derived from protein produced within cell, MHC class I is bound with peptides from proteins produced in cell this is then presented to TCR of CD8 T cells, this is a way of dealing with pathogens that have invaded the cell eg viruses and intracellular cytoplasmic pathogens
CD4 T cells: these cells recognise peptides take from proteins outside cell form extracellular pathogen so MHC class II bound with peptides derived from proteins taken up by antigen processing cell, these are from extracellular pathogens or intracellular pathogens in vesicles. This is then presented to TCR of CD4 T cells
MHC class I and II are expressed on different cell types
Most cells of body express MHC class I
The main reason for this is to do with NK cell recognition and differentiating self and non self
Only red cells dont express MHC class I
Antigen presenting cells that express MHC class II- when these cells are activated they upregulate class II on their surface enabling them to process and present more antigen to CD4 T cells
Class I and II can be up regulated by inflammatory cytokines (eg IFN gamma)
Response of T lymphocytes to antigen binding
Antigen recognition
Lymphocyte activation
Proliferation
Differentiation
Effector functions: activation of macrophages, B cells and other cells; inflammation. Killing of infected cells; macrophage activation
Effector CD4 T cell and memory CD4 T cell
Effector CD8 T cell and memory CD8 T cell
Diversity is generated by rearranging germline DNA of heavy and light/ alpha & beta chains
The germline coding for heavy and light chains/ alpha and beta chain variable regions contains multiple segments
These segments are called V, D, J segments
Mechanism:
-the V, D regions and J segments can rearrange this is called VDJ recombination
-this variation in the genes is then attached to constant domain
-this generates diversity
-this occurs as B and T cells develop
-the diversity of VDJ genes are on different chromosomes:
-heavy chain genes of antibody are on C15 and kapa and lambda light chain genes are on C22 and C2
-alpha and beta chains of T cell receptors are also on different chromosomes
Order of gene rearrangement
B cells:
-the heavy chain rearranges its gene segments first and then the light chain rearranges their gene segments
-heavy chains have V,D,J segments
-light chains are either kappa or lambda- both have only V and J segments no D segments
T cells:
-beta chain rearrangement occurs first with V,D,J segments then light alpha chains rearrange their gene segments
-alpha chains also have only V and J segments no D segments
Therefore you have to have heavy/beta chain successful rearrangement before you get alpha/light chain rearrangement
Generation of diversity
Diversity is primarily generated by the recombination of gene segments dependent on the activity of the recombinase activating genes RAG-1 and RAG-2
Further variability is introduced at the joining regions of each segment by an enzyme terminal deoxynucleotidyl transferase tdt.
For B cells somatic hypermutation will further increase diversity
Each cell expresses an antigen-specific receptor of a single specificity through a process of allelic exclusion
Diversity of lymphocyte antigen receptor genes
Immunoglobin (B cells): heavy chains- IgM, IgA, IgD, IgE, IgG. Light chains- kappa k and lambda l
T cell receptors: TCR beta, TCR alpha, TCR gamma, TCR delta
Generation of diversity: rearrangement of antigen receptor genes
Normally one gene encodes 1 mRNA which then goes on to produce 1 protein
The antigen receptor genes of lymphocytes do not behave like that
Antigen receptor genes are made up of various regions:
-variable V regions, diversity D regions, joining J regions, constant C regions
During T cell and B cells development the antigen receptor genes undergo rearrangement:
-the cell randomly choose a particular variable, diversity , joining and constant region from the ones present in the genome
-these are then joined to give a fully rearranged gene by ignoring part of the genome
-because these gene regions contain different nucleotides a distinct mRNA will be produced for the distinct rearranged gene
-therefore the antigen receptor protein will be distinct
-different cells make different choice-how diversity can be obtained
For the TCR-beta TCR-gamma and Ig heavy chain gene we have 4 components: variable, diversity, joining and constant
Whereas for TCR-alpha TCR-delta and Ig light chain we have 3 components; variable, joining and constant
However the process for their production remains the same
Types of antigen receptors
Because rearrangement occurs randomly every lymphocyte expresses a different antigen receptor
But how do you avoid lymphocytes that will target your own body tissues causing autoimmune disease
The randomly generated fall into 3 categories:
the bad ones:
-these might recognise self antigens so may lead to an autoimmune disease need to get rid of these via negative selection process
The good ones:
-recognise foreign antigens e.g present on virus or bacteria
-we need to encourage the immune system to retain these through positive selection
The ugly ones:
-the useless ones that encode proteins that wont see antigens, no need to retain these in immune system so die by neglect
B cell selection
For B cells negative selection of autoreactive B cells can occur in bone marrow
During development B cells in an immature stage (express surface immunoglobulin) are auditioned for self antigens on the stromal cells that make up bone marrow
These allow B cells to check specificity for self antigens
If there are no recognition of self antigens by this particular antigen-receptor complex the cell receives a survival signal so undergoes positive selection its then able to leave bone marrow and develop further
However if B cell recognises self antigen this could be harmful so cell is triggered to undergo deletion via apoptosis
T cell selection
More complex than B cells
T cells cant see an antigen in the same way
B cells recognise self antigens in native form (dont need to be processed or presented)
T cells only recognise processed antigen fragments presented by MHC molecules of an antigen presenting cell
T cell selection in the thymus
The good (positive selection): T cell receptors that will see foreign antigens undergo positive selection
The bad (negative selection): T cell receptors that will see self antigens need to be removed via negative selection as they can generate autoimmune responses
The ugly (death by neglect): T cell receptors that dont see anything at all die by neglect
The anatomical compartmentalisation of T cell selection in the thymus
The thymus is divided into individual lobules
Each lobule has an outer cortex and a medulla
The cortex is responsible for driving positive selection
The medulla is responsible for destroying harmful cells by negative selection
Stromal microenvironments in the thymus
The epithelial cells in medulla and cortex of the thymus are important for driving the T cell development process- they provide key signals
In the cortex:
-cortical epithelial cells
-cortico-medulla junction: blood vessels found at this junction allow progenitors at beginning of T cell development into the thymus and let mature T cells out and the end of development. Also have APC- dendritic cells sit here
In the medulla: medullary epithelial cells
T cell selection in cortex:
-set of developing T cells that express both CD4, CD8 at same time and express TCR at this time of a random specificity
-can the TCR bind to MHC: if yes undergo positive selection if no undergo death by neglect
T cell selection in medulla:
-do they bind MHC too strongly; if yes the immune cell is cautious and assumes these cells could cause autoimmune response so destroy via negative selection. If no no risk and cells mature further
-if cells recognise MCH class II then they become CD4 T cell switch off CD8 gene
-if cells recognise MHC class I become CD8 T cell switch off CD4 gene