Week 4A: Integration Metabolism, Role of Organs, Feast/Famine, Diabetes Mellitus & Alcohol Flashcards
HC23-26
Kinetics curve of multidomain enzymes with regulatory and catalytic domains
Sigmoidal curve
> sum curve R-state and T-state.
> do not obey Michaelis Menten kinetics
Multidomain, regulated enzymes are usually the ..
catalysers of the committed step in a pathway.
is HMG-reductase a monomer?
No, a highly regulated dimer: committed step in cholesterol biosynthesis
Which enzyme is targeted by statins?
HMG-CoA reductase
> also upregulates LDLR: higher dose used in homozygous FH than heterozygous FH (familial hypercholesterolemia)
Phosphorylation regulation in glycogen metabolism
Glycogen phosphorylase (GP): breakdown and glycogen synthase (GS): synthesis.
> a-forms, normally in active R-state
> allosteric metabolites can overrule phosphorylation status
> phosphorylation of GP and GS via PKA for example
> activates GP, inactivates GS
Phosphorylation regulation in fatty acid metabolism (acetyl-CoA carboxylase in synthesis)
Active carboxylase when dephosphorylated by PP2A.
Inactive carboxylase when phosphorylated by AMPK (AMP-activated protein kinase)
Difference AMPK and adenylate kinase
AMPK uses AMP and ATP to phosphorylate a protein
> result, AMP still bound, ATP to ADP for phosphorylation.
Adenylate kinase: ADP + ADP <=> ATP + AMP for extra energy
Why is the regulation of acetyl-CoA carboxylase logic?
When high AMP, low energy, no FA synthesis wanted.
AMPK phosphorylates and inactivates ACC
Metabolite regulation of liver and muscle glycogen phosphorylase
Liver: glucose can allosterically bind and inactivate the GP-a for change to T-state (even when phosphorylated in a form)
Muscle: binding AMP to get in R state as GP-b
Binding ATP or G-6-P causes change to T-state. (enough energy, no breakdown glycogen needed)
> not necessarily in a or b form, but it shows the overruling of phosphorylation state
Why isn’t liver GP inactivated by AMP?
The liver is the glucose homeostasis regulator and can convert G-6-P to glucose with G6Pase and needs to consider other tissues needs, not only its own
Metabolites may overrule phosphorylation regulation of enzymes: Acetyl-CoA carboxylase
Phosphorylated ACC is inactive. But if it binds citrate (shows that there is enough energy, TCA cycle stopped), than partly active ACC. (FA synthesis committed step)
Which enzymes is regulated as regulatory filaments?
Acetyl-CoA carboxylase forms regulatory filaments
> Palmitoyl-CoA (intermediate FA oxidation/breakdown) causes filaments to disassemble (product inhibition) to inactive dimers > induces conformational changes as a regulator
Name catabolic pathways and anabolic pathways (interconnected)
Catabolic:
- oxidation
- oxidative decarboxylation
- oxidative deamination
Anabolic
- Reductive biosynthesis
- Carboxylation
- Synthesis
Control of metabolic fluxes
-Based on energy states: fed, fasted, starvation
-Irreversible steps set the pace
Manipulation of metabolic fluxes
-Changing enzyme activities at irreversible steps with the high flux control (short term)
-Changing multiple activities at the same time: controlled gene expression (long term)
An irreversible step is a reaction with a large .. value
Keq
= [C][D]/[A][B]
in A + B <=> C + D
And large negative dG0
> change flux by changing enzyme activity or amount of enzyme
Reversible step has a … dG0 and flux can be changed by …
small, flux changed by changing concentrations of reactants
ATP yield of 1 glucose
Glycolysis: 2 ATP and 2 NADH (22.5=5)= 7 ATP
-Pyruvate oxidation: 2 NADH = 5 ATP
-TCA cycle: 2 acetyl CoA yields 2 times 3 NADH + 1 FADH2 + 1 GTP so 2 (7.5 ATP [3+2.5] + 1.5 [FADH2] + 1 [GTP] = 20 ATP
> total 30-32 ATP
1 glucose yields 30-32 ATP, dependent on
Shuttle which is used (redox) across mitochondria for NADH of glycolysis
- Glycerol-3-phosphate
- Malate-aspartate
Glycerol-3-phosphate shuttle
shuttle in muscle: DHAP in cytosol converted to glycerol-3-P by cytoplasmic glycerol-3-P dehydrogenase (GAPDH, using NADH) in intermembrane space and glycerol-3-P and this is converted by mitochondrial GAPDH to DHAP (yielding FADH2).
> 2 cytosolic NADH and yields 2 mitochondrial FADH2: 1.5 ATP per FADH2: 3 ATP. 30 ATP total
> turbo glycolysis
Malate-acetate shuttle
shuttle in liver, brain and heart muscle: 32 ATP yield. NADH reduces oxaloacetate in cytosol to malate and transport to matrix and in matrix conversion malate to oxaloacetate and through a-ketoglutarate and aspartate (converted from glutamate, coupled to oxaloacetate> a-ketoglutarate) back to cytosol. In cytosol conversion a-ketoglutarate to oxaloacetate (oxidize NADH) and aspartate to glutamate (tranport to matrix)
> 2 cytosolic NADH to 2 NADH in matrix: 2.5 ATP per, total 5, total 32 ATP
What happens to the FADH2 from glycerol-3-phosphate shuttle
Flavoprotein which donates electrons to coenzyme Q in ubiquinone (Q) form (reduced to ubiquinol QH2).
What happens to beta-oxidation created FADH2?
Electron-transfer protein (ETF) with the FADH2 prosthetic group.
> gives to Q
malate-aspartate shuttle is slower than glycerol-3-phosphate shuttle?
More enzymes involved.
Where does the decarboxylation of pyruvate to acetyl-CoA by PDH take place?
Mitochondrial matrix
Succinate dehydrogenase (TCA cycle enzyme) is part of the …. complex (complex II)
Succinate-Q reductase
Three sources of FADH2 which give electrons to coenzyme Q (ubiquinone (Q))?
-Succinate-Q reductase (complex II, with succinate dehydrogenase)
-Electron-transfer flavoprotein (ETF, beta-oxidation > from acyl-CoA dehydrogenase)
-Glycerol-3-phosphate shuttle.
What happens to glycerol (C3) in the liver in the fasted state?
Precursor for gluconeogenesis via
-Glycerol > glycerol-3-P
Glycerol-3-P > Triose-P (yields NADH > 2 per glucose)
Extra yield lactate as substrate gluconeogenesis
Lactate (C3) requires extra NADH oxidation > yields 2 extra NADH per glucose made
How is the NADPH required for FA synthesis made?
Pentose Phosphate Pathway
Committed step enzymes for glycogen and glucose metabolism
Glycogenolysis: Glycogen phosphorylase (GP)
Glycolysis: Phosphofructokinase (PFK-1)
Glycolysis > TCA cycle: Pyruvate dehydrogenase
PPP: Glucose-6-P dehydrogenase
Gluconeogenesis: Pyruvate carboxylase (PC)
Committed step enzymes FA metabolism, Cholesterol biosynthesis, ketogenesis and urea cycle
FA breakdown: Carnitine Palmitoyl transferase I (CPT-I)
FA synthesis: Acetyl-CoA Carboxylase (ACC)
Cholesterol biosynthesis: HMG-CoA reductase
Ketogenesis: HMG-CoA synthetase
Urea cycle: Carbamoyl-phosphate synthetase
Which intermediate is formed when condensing citrulline and aspartate to argininosuccinate in urea cycle?
Citrulline-AMP (adenylated)
Structure urea: central carbon, two amino groups and oxygen atom. Where are the origins?
Amino group 1: Deamination
Amino group 2: aspartate
Carbon: Hydrogen carbonate (HCO3-, from hydration of CO2)
Oxygen: from water H2O in last step: Arginine + H2O > Ornithine + Urea
How are the TCA cycle and respiratory chain coupled? What is respiratory control
NADH activated carrier
> more oxygen required when more ATP needed in exercise: respiratory control
> halt both when enough ATP
How is ATP synthesis coupled to respiratory chain?
Proton gradient
> Halt when enough ATP: proton pumps stop, NADH concentration high and NAD+ low, TCA cycle stops (accumulation of acetyl-CoA and citrate as regulators ….)
How is urea cycle linked to gluconeogenesis?
Nitrogen metabolism of fumarate and aspartate
Argininosuccinate to arginine releases fumarate which is converted to oxaloacetate via malate.
> oxaloacetate to gluconeogenesis
> oxaloacetate to aspartate by deaminating an alpha-amino acid
> use aspartate in urea cycle
Pasteur effect glycolytic ATP vs mitochondrial ATP
Inhibition glycolysis by respiration
> preference for mitochondrial oxidation of pyruvate.
> in mitochondrial malfunction: glycolysis and lactate formation highly stimulated
Lactate dehydrogenase reaction
Lactate donates Hydride ion and hydrogen ion (H+) from the C2 carbon (count from carboxyl end) to NAD+ to form NADH, H+ and pyruvate.
> First: Removal H+
> NAD+ can take up hydride ion (H-: H+ + 2 e-)
Which amino acid side chain can take up H+?
Histidine
> in lactate dehydrogenase, lactates H+ transferred to active site His-195 and hydride ion to NAD+
Warburg effect
Using glycolysis when oxygen is available
> in tumor cells
> PDH strongly inhibited
> upregulation glycolysis
> downregulation mitochondrial respiration (increased membrane potential)
Important role for this factor in Warburg effect
Hypoxia-inducible factor 1-alpha (HIF-1alpha)
Altered gene expression in tumor cells for Warburg effect
Hypoxia
> activation HIF-1 transcription factor
> metabolic adaption: block PDH, increase glycolytic enzymes, and blood vessel growth stimulated
> without O2 as electron acceptor: respiratory chain is unable to generate proton motive force
Paradox of the Warburg effect in cancer cells
Lactate production with or without oxygen
> little but use of mitochondria
> anaerobic glycolysis rules
Which enzyme inhibits PDH and therefore oxidative phosphorylation
Pyruvate dehydrogenase kinase (PDK) phosphorylates and inhibits PDH
Drug to target Warburg effect
Dichloroacetate (DCA) activates PDH flux
> normalize mitochondrial protein motive force and inhibits tumor growth
> slows down tumor growth
> PDK inhibited
Fates pyruvate in liver
-To oxaloacetate by pyruvate carboxylase (gluconeogenesis, fasting)
-To acetyl-CoA by PDH (fed state)
> metabolic regulator of the fate: acetyl-CoA (accumulated when TCA cycle halted and high energy), activates PC and inactivates PDH.
Reciprocal regulation glycolysis/gluconeogenesis
F-2,6-BP
> Activates PFK-1, inactivates F-1,6-BPase
ATP/ADP
> ATP inactivates PFK-1 and PK
> ADP inactivates PC and PEP carboxylase
> AMP inactivates F-1,6-BPase
Citrate
> inactivates PFK-1 and activates F-1,6-BPase
Others
> Low pH (H+) inactivates PFK-1 (lactate production/ anaerobic)
> Alanine inhibits PK (substrate gluconeogenesis, signals starvation)
Reciprocal regulation in FA metabolism
Committed enzyme synthesis > ACC; acetyl-CoA carboxylase
> activated by citrate (feedforward stimulation)
> inhibited by palmitoyl-CoA (before committed step beta-oxidation)
Carnitine-palmitoyl transferase-1 (committed in beta-oxidation)
>Inhibited by malonyl-CoA, product of committed step in FA synthesis from Acetyl-CoA, HCO3- and ATP (to ADP + Pi)
HC24: Why do fats contain the most energy?
More reduced carbons: more energy for oxidation
> less polar and water attraction
> less osmotic value
Glucose and VLDL or Chylomicrons to TAGs in adipocytes
Glucose from liver
> Uptake by GLUT4, Glucose to glycerol-3-P
Fatty acids uptake by FATP and CD36, released by LPL out of VLDL (from liver) or chylomicrons (from intestine)
> FAs to acyl-CoA
> Glycerol-3-P + acyl-CoA > TAGs
TAG products from lipolysis in adipocyte in blood
-Glycerol: to liver
-FA-albumin complexes > to peripheral tissue
How are hormones produced by adipocytes called?
Adipokines
When are leptins secreted by adipocytes?
When the lipid droplet is full > feeling of saturation / satiety > enough eaten
Leptin signaling
Bind receptors in the arcuate nucleus (ARC) in the hypothalamus
> insulin has this function as well
> inhibition NPY and AgRP and activation POMC producing neurons > POMC increases MSH expression > decrease food intake
Obesity is often associated with … resistance
Leptin resistance