Week 2 - Population genetics and evolution of genomes Flashcards

1
Q

What is the difference between macroevolution and microevolution?

A

Microevolution refers to change under species level, described as changes in allele frequencies- natural selection. Where as, macroevolution refers to change that occurs above species level (e.g. phylogenies)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What are Darwin’s 6 observations?

A
  1. There is variation amongst traits in a population
  2. Traits are inherited by offspring
  3. More offspring is produced than an environment can support
  4. Inherited variations affect survival and reproduction
  5. Individuals who’s inherited traits increase their survival normally leave more offspring
  6. Over generations this leads to an accumulation of favourable characteristics
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What is the definition of a mutation?

A

Changes in the nucleotide sequence of DNA, cause new genes and alleles to rise

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

What is a point mutation?

A

The change in one base in a gene, significantly impacts phenotype.
Can be silent, nonsense, missense

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Which 3 mechanisms act on the variability generated by mutations?

A

Natural selection
Genetic drift
Gene flow (migration)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Which of the 3 mechanisms consistently causes adaptive evolution?

A

Natural selection

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What is meant by adaptive evolution?

A

It occurs as the match between a species and its environment increases

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

What is meant by relative fitness?

A

It is the contribution an individual makes to the gene pool of the next generation, relative to other individuals

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Which type of selection favours birds with larger beaks ?

A

Directional - favours individuals at [one end] of the [phenotypic range].

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Which type of selection favours small and large beaks in an environment with large hard seeds and small delicate ones.

A

Disruptive selection- favours individuals at both extremes of the {phenotypic range}

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Which type of selection favours babies with an average birth weight?

A

Stabilizing selection - favours intermediate variants, acting [against extreme phenotypes]

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What is an example of artificial selection?

A

Humans selecting certain dogs and breeding them

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

What is genetic drift ?

A

The change in the frequency of alleles due to random sampling of organisms.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Why is genetic drift non-adaptive?

A

Because it occurs randomly, so the phenotypes do not matter.
It tends to reduce genetic variation through losses of alleles.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What are the 2 types of genetic drift ?

A

Bottleneck effect (time)
Founder effect (space)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

What is meant by The Bottleneck Effect?

A

When a reduction in population size occurs due to a non-selective (random) change in the environment- like a natural disaster.
Reducing the size of the gene pool

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

What is meant by The Founder Effect?

A

When individuals become isolated from a larger population - e.g. migration
Allele frequencies may be different in the small founder population compared to the parent population.

18
Q

What is meant by Gene flow and how does it influence variation and adaption of a population?

A

The movement of alleles among populations (e.g. migration).
It can reduce variation by homogenizing the genetic make up of different populations.
It can also increase the spread of alleles for resistance - increasing the adaptability of a population.

19
Q

What is meant by the term “Ring of species” ?

A

The gene flow between different species/populations that usually can’t reproduce due to [geographical isolation].

20
Q

What does introgression mean?

A

The insertion of an allele specific to one species in another one, produced by “Ring of species” .

21
Q

What is the definition of a species?

A

A group of organisms [capable] of [reproducing fertile offspring], typically using [sexual reproduction].

22
Q

What is a population?

A

A [localized] group of individuals [capable] of interbreeding and [producing fertile offspring].

23
Q

What is meant by the term population genetics?

A

How populations change genetically over time

24
Q

What is a gene pool?

A

The [total aggregate of genes in a population] at any one time.

25
What is Hardy-Weinberg's theorem?
That allele and genotype frequencies in a population will remain constant from generation to generation in the absence of other evolutionary forces. (A NON EVOLVING POPULATION)
26
What are the 5 conditions for non-evolving populations?
1. Large population size (no genetic drift) 2. No gene flow (no migration) 3. No mutations 4. Random mating (no sexual selection) 5. No natural selection (non differential reproduction).
27
What use might Hardy-Weinberg equations have in the real world?
Used to estimate the percentage of the human population carrying the allele for an inherited disease
28
What did Darwin mean by the term decent with modification?
All living organisms are related through descent from a single last common ancestor that lived in the remote past
29
What is speciation and how does it work?
Speciation = the formation of new species A barrier stops gene flow between 2 populations, the populations diverge until their biology becomes incompatible.
30
What do characters need to be to work out their evolutionary relationships?
Homologous
31
What is the difference between homology and analogy?
Homology = traits that are similar in structure due to inheritance from a last common ancestor (but the feature may not be used for the same function). E.g. Fore limbs of humans, bats, whales (all have same structure but different uses) Analogy = Traits with similar functions, but haven't evolved from a last common ancestor instead by convergent evolution. E.g. bird wings and butterfly wings
32
What is the firs step to building a phylogeny?
Creating a character matrix to record presence/absence of a trait
33
Which DNA evolves faster, Non-coding or protein coding?
Non-coding
34
In protein coding regions do nucleotides or their amino acids evolve faster?
Nucleotides
35
Which evolves faster, Mitochondrial DNA or Nuclear?
Mitochondrial
36
What is the difference between species trees and gene trees?
Species trees use [traits] to reconstruct the evolutionary history of species - can use [orthologous genes] Gene trees reconstruct the evolutionary history of genes - can use orthologous and paralogous genes
37
What subtypes can homologous genes be split into?
Orthologous genes (orthologs) and Paralogous genes (paralogs)
38
What is the difference between orthologous genes and paralogous genes?
Orthologs (genes) = are genes found once in each genome, but are found across multiple species and originate at a speciation events. Usually have the same function across species (e.g. cytochrome c gene - involved in respiration in humans and mice) Paralogs (genes) = are genes found in the same species multiple times due to gene duplication events. There function can diverge and evolve within the genome
39
Which type of genes can reconstruct the evolutionary relationships of genes (the phylogeny of a species).
Orthologous genes (speciation)
40
What are Xenologs?
Another class of genes in which horizontal gene transfer occurs (the movement of genetic material without reproduction occurring).