week 2 + 3 Flashcards
examples of beta lactams
penicillin, carbapenem, cephalosporin, monobactam
what do beta lactam antibiotics inhibit?
inhibit the synthesis of the bacterial peptidoglycan by inhibiting the action of cross-linking enzymes (PBPs).
how can stability of penicillin in acidic medium be increased
. Attaching electronegative groups minimizes neighboring group attack on the β-lactam carbonyl. (The carbonyl is protected). nucleophilic attacks in the acidic medium prevented.
cephalosporins are a group of ___ spectrum antibiotics that resemble penicillin
broad
streptococcus gram positive or negative
gram positive
e coli gram negative or positive
gram negative
purpose of streaking
allows to see distinct colonies on an agar plate
polyenes, give examples
bind directly with ergosterol in the cell membrane causing leakage and cell death. examples - amphotericin B, Nystatin
azoles (imidazole and triazole), give examples
imidazoles- clotrimazole, miconazole, econazole
triazoles- fluconazole, voriconazole, itraconazole.
comeptitively inhibit the lanosterol enzyme involved in ergosterol biosynthesis.
echinocandins, give examples
non-competitively inhibit β-1, 3-D-glucan biosynthesis in cell wall causing cell lysis and death. example- caspofungin
allyamines, give example
Inhibit squalene epoxidase required for ergosterol biosynthesis. examples terbinafine
what is low bioavailability caused by
high logP values and being bound to plasma proteins.
how does clotrimazole work ?
inhibits fungi from producing ergosterol - an essential part of fungal cell membranes. this causes holes in the fungal cell membrane.
what makes clotrimazole available for topical application?
positive logP. the drug will be able to permeate te stratocornellium of the skin, and to the fungal cells.
clotrimazole pka
5-6
HIV viral replication
1- fusion of HIV to the host cell surface
2- HIV RNA, reverse transcriptase, integrase and other viral proteins enter the host cell.
3-Viral DNA formed by reverse transcription
4-Viral DNA is transported across the nucleus and integrates into the host DNA.
5- New viral RNA is used as genomic RNA and used to make viral proteins.
6 - New viral RNA and proteins move to the cell surface, and a new, immature HIV forms.
7 -Virus is released. Viral protease cleaves new polyproteins to create mature infectious virus.
key enzymes involved in HIV replication
protease, reverse transciptase and integrase.
biostere
biologically similar shape
NRTI’s - what does it stand for? how do they work?
Nucleoside reverse transcriptase inhibitors.
mimic the natural nucleoside that are incorporated into the double helix chain of DNA-RNA and DNA. when incorporated into the growing chain it causes chain termination and so no more HIV can be made and CD4 cells are not further compromised.
what are NRTI drugs activated by
viral kinase
in NRTI’s what do base pairs, triphoshate and the N3 in NRTS’s allow for?
base pairs- allow for double strands
thriphoshate- allows for chain elongation
N3- essentially makes the NRTI work as it means chain termination.
example of NRTI
Zidovidine
NNRTIs what does it stand for how do they work?
Non-Nucleoside reverse transcriptase inhibitors. known as allosteric inhibitors and bind to a lipophilic pocket at the base area of the RT enzyme. conformationally prevents the enzyme from allowing the single strand of RNA to be transcribed, protecting replication and protecting CD4 cells
what shape are 1st gen NNRTIs
butterfly wing
what shape are 2nd gen NNRTIs
horse shoe type shape
example of NNRTIs
remdesivir
how is remdesivir different to NRTIs
3’ hydroxyl group is present
glycosidic bond c-c is more stable therefore harder to cleave by nucleases
cyano group provides less toxicity and increases stability
more lipophilic
phosphates are highly charged
what are protease inhibitors
large proteins made following transcription and translation. processed into smaller proteins to make virion.
protease ‘cleaves’ the larger proteins and hydrolysis pf the protein peptide bond occurs.