Week 1 Flashcards
Proton
Positive charge, located in nucleus, contribute significantly to mass of atom
Neutron
Neutral charge, found in nucleus, contributes significantly to mass of atom
Electron
Negative charge, occupies regions of space called orbitals (exact location unpredictable), have much smaller mass and contribute negligibly
Graph: distance between two atoms and potential energy
- Atoms are far apart. PE approaches 0. 2 atoms are independent
- Atoms are close together. There is some attraction. Potential energy decreases.
- Atoms are at the observed bond distance when they form a molecule (Most stable configuration. The bond is strongest)
- The atoms are extremely close and there are strong repulsive forces. Increase in PE.
What is means for an atom to be partially charged.
Atom has partial electric charge because the electrons are not shared equally. Electronegativity measures how strongly an atom attracts electrons in a chemical bond, where a more electronegative atom attracts shared electrons more strongly, resulting in a partial negative charge on it and a partial positive on the atom attracting the electrons less. Water molecules have polar covalent ponds because oxygen is more electronegative than hydrogen.
Nonpolar covalent bond
Forms when electrons are shared equally between atoms, resulting in no partial charges
Polar covalent
Electrons shared unequally between 2 atoms, lending to partial positive charge on one atom and partial negative on another
Ionic bond
One atom completely transfers an electron to another, resulting in the formation or positively and negatively charged ions that attract each other. This happens when there is a large difference in electronegativity between the two atoms
Hydrogen bond
Hydrogen atom covalently bonded to a highly electronegative atom (like O or N) is attracted to another electronegative atom
Van deer Waals forces
Weak interactions that arise from transient dipoles in molecules
Hydrophilic and hydrophobic
Hydrophilic substance can dissolve or form hydrogen bonds with water due to its polarity
Hydrophobic substance does not mix well with water. It is no polar and lacks the charged regions necessary for interacting with polar water molecules
Elements
Pure substances made up of single type of atom, organized based on chemical properties
Atoms
basic building blocks of matter, and they consist of three types of subatomic particles:
◦ Protons (positively charged particles)
◦ Neutrons (neutral particles)
◦ Electrons (negatively charged particles).
• The nucleus of an atom contains the protons and neutrons, while the electrons move around the nucleus in specific regions of space known as orbitals.
Atomic number
Number of protons in an atom. Defines the element
Atomic mass
Sum of protons and neutrons. Protons and neutrons each have mass of 1
Isotopes
Variations of an element where atoms have the same number of protons but different numbers of neutrons (difference in atomic mass)
Ions
Atoms that gain or lose electrons in chemical reactions
◦ Cations are positively charged ions formed when an atom loses one or more electrons.
◦ Anions are negatively charged ions formed when an atom gains one or more electrons.
Electron orbitals and energy levels
Electrons are not positioned in fixed orbits around the nucleus but in orbitals, which define where an electron is likely to be found. They come in different shapes/sizes
• Each orbital corresponds to a specific energy level (or shell). The closer the orbital is to the nucleus, the lower the energy of the electron.
◦ First shell (n=1): Can hold a maximum of 2 electrons, occupying one spherical orbital.
◦ Second shell (n=2): Can hold up to 8 electrons and consists of a combination of spherical and dumbbell-shaped orbitals.
◦ Electrons fill the orbitals closest to the nucleus first, as these have lower energy. As the number of electrons increases, additional shells are filled.
Periodic Table
Tabular arrangement of elements based on increasing atomic number
◦ Rows (Periods): same period=same number of electron shells (energy levels).
◦ Columns (Groups): same group=same number of electrons in their outermost electron shell (valence electrons)
Covalent bond
Most common bond in biological molecules. Outermost orbitals of two atoms overlap as they approach each other and each atom shares one electron to form a pair of electrons. Atoms tend to form covalent bonds so that their outer shell of electrons is filled (OCTET RULE)
Water
polar molecule due to the unequal distribution of electrons. O is more electronegative than H, causing a slight negative charge on the O atom and slight positive charges on the H atoms.
Water molecules form H-bonds between the slight positive Hs and the negative Os of adjacent water molecules. These are WEAK BONDS (weaker than covalent), but give water unique properties
Properties of Water
Density of Water: transient H-bonds in liquid water, allowing the molecules to remain relatively close. (Ice floats)
Cohesion+ Surface Tension: the tendency for water molecules to stick to each other—>high surface tension
Heat Capacity/Temperature Regulation: resists changes in temperature. When heated, much of added energy goes into breaking H-bonds rather than increasing the kinetic energy of molecules—>high specific heat capacity, which means it can absorb or release large amounts of heat without significantly changing temperature.
pH
Measure of concentration of protons in a solution. Ranges from 0-14 (7 is neutral- Concentrations of H+ and OH- are equals)
Amphipathic
Molecules with polar and nonpolar regions