Week 1 Flashcards

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1
Q

What are some of the primary mechanisms that generate diversity in the tree of life

A

Natural selection
- Phenotypic variability within populations created by genetic mutations
-Environmental, spatial and temporal heterogeneity (diversity)

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1
Q

What are some of the secondary mechanisms that generate diversity in the tree of life

A

-Complexity in structures
-Interactions
-Complex reproductive systems
- Colonization of novel habitats
-Hybridization and polyploidy

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1
Q

Key attributes to diversity of life

A

-Genetic variation
-morphological diversity
-ecological niches
-behavioural adaptations
-physiological diversity (functions of structures)
-reproductive strategies
-genomic complexity

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2
Q

Progression of our understanding of the tree of life

A

Aristotles ladder of life –> Whittakers 5 kingdoms based on morphology –> Universal tree of life, based on rRNA

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3
Q

What can increase a cells complexity?

A

Membranes and the organization that they provide

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3
Q

What is the best piece of evidence that advocates for a common ancestor between species?

A

A common genetic code - emphasizes the importance of rRNA in phylogenetic sequencing
- RNA is largely believed to be the initial genetic material

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4
Q

What are the 3 fundamental characteristics of life?

A
  1. Is able to grow (if not in size than in population)
  2. is able to reproduce
  3. is able to pass on characteristics to the next generation
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5
Q

The stages that produced the first simple cells on earth

A
  1. The abiotic synthesis of small organic molecules such as amino acids and nitrogenous bases
  2. The joining of these small molecules into macromolecules (proteins and nucleic acids)
  3. The packaging of these molecules into protocells (droplets with membranes that maintained an internal chemistry, different from that of their surroundings
  4. The origin of self-replicating molecules that eventually made inheritance possible
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6
Q

The impact of the oxygen revolution

A

Doomed many prokaryotic species

SAQW DIVERSE ADAPTATIONS TO THE CHANGING ATMOSPHERE SUCH AS CELLULAR RESPIRATION
- selected for mitochondria

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7
Q

Define a virus

A

a genome that replicates itself inside of a host cell by directing the machinery of the host cell to synthesize viral nucleic acids and proteins

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7
Q

Sorting Homology from Analogy

A

Convergent evolution: analogy

Common ancestry: homology

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8
Q

viral replication cycle

A

the viruses enters the cell and is uncoated, releasing viral DNA and capsid proteins

host enzymes replicate the viral genome

host enzymes transcribe the viral genome into viral mRNA, which host ribosomes use to make more capsid proteins

viral genomes and capsid proteins self-assemble into new virus particles, which exit the cell

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9
Q

Definition of a species

A

Biological species: reproductive isolation, gene flow

Ecological species - niche differences

Morphological Species - differences in structure

Prokaryotic species: share 97% DNA they are of the same species

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9
Q

Why are viruses important in the functioning of soils and oceans

A

Viruses are acting on the bacteria all the time, killing them and releasing their contents
- makes their contents available to other organisms

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10
Q

Are viruses considered living?

A

On the border:
they contain heritable material

not personally affected by temperature

rely on a host to function

could have been the first living organism on Earth

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10
Q

Prions

A

proteins as infectious agents

act very slowly, have a long incubation period

11
Q

Viral transmission

A

animal vectors, bodily fluids, air, hand contact

11
Q

How do prokaryotes accomplish variation

A

Short generation times and large populations

  • Genetic Recombination
    -Transformation
    -Transduction
    • Conjugation and plasmids
11
Q

vertical Transmission of viruses

A

inherits from parent

12
Q

Horizontal Transmission of viruses

A

Very common in plants, the plant is infected from an external source of the virus (animal eating it)

12
Q

How does being so small impact prokaryotes

A

Intimate contact with their surroundings makes them highly sensitive to their environment

Rapid Reproduction

High rate of living do the a high SA:Volume

Rely heavily on water availability

13
Q

Describe the boom and bust life cycle of prokaryotes

A

since they have limited mobility spatial and temporal heterogeneity in nutrients and environment is critical to prokaryotic activity
The environment they are in selects for their survival: boom and bust life cycle - when things are good they flourish and if not they quickly cease

14
Q

Since it is hard to phagocytosize due to the rigid cell walls, how do prokaryotes get nutrients

A

secrete exoenzymes that can degrade organic matter and take up the nutrients by active transport across the membrane

14
Q

Heterotroph vs Autotroph vs Chemotroph vs Phototroph

A

Energy from light: prototrophs

Energy from chemical: chemotrophs

Only need CO2: autotrophs

Require at least one organic nutrient to make organic compounds: heterotrophs

15
Q

Metabolic Cooperation

A

Cooperation between prokaryotic cells allows them to use environmental resources they could not use as individual cells

Can take place between specialized cells of a filament - a cell cannot do two processes at once, and so by having filamentous chains and can carry out both photosynthesis and nitrogen fixation (done by heterocyst’s)

Metabolic cooperation between species often occurs in surface-floating colonies called biofilms

15
Q

Reasons for prokaryotic success

A

Long evolutionary time
Particular aspects of their biology:
Small size
Rapid generation time
Capacity for prolonged dormancy
Diverse energy and nutritional capabilities
Diverse mechanisms to generate genetic variability