Viruses And Prokaryotes Flashcards

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1
Q

Viruses

A

Viruses - contain nuclear acid (DNA or RNA) in/is surrounded by a protein coat

1) some viruses enclosed by membrane
2) cannot carry out reproduction or metabolic processes on their own, require a host cell
3) essentially just packaged genes passed from one cell to the next

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2
Q

Variation in viruses

A

Affect a limited variety of host cells called host range of virus
Virus & host have to fit together like lock & key
Fit is of protein on surface virus & the receptor molecule on host cell
West Nile virus - broad host range, can affect the mosquito, birds & mammals
Measles virus - only infects humans
Some viruses are only cell type specific like aids - infect white blood cell lymphocyte
Cold viruses only infect cells of respiratory tract

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3
Q

Bacteria and archaea

A

Masters of adaptation
Halobacteria - use light to drive synthesis of ATP, extreme halophiles = salt tolerant, domain archaea
Deinococus Radiodurans - 3 million rads of radiation, domain archaea
Other prokaryotes - can live in acidic environments (even acid th/ melts metals)

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4
Q

Common prokaryote shapes

A
Small
Unicellular
Well organized even without membrane bound nucleus & organelles
Spherical (cocci) - strep throat
Rod (bacilli) - anthrax
Spiral - syphillus
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5
Q

Cell wall comparison

A
Cell wall function
Maintain shape
Protection
Maintain water balance
Structure
Bacteria - peptidoglycan made up if sugar polymers that are cross linked by polypeptides
Archaea - polysaccharides & proteins
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6
Q

Cell wall: G+ vs. G-

A

Gram (+) - larger # of peptidoglycan in cell wall
Gram (-) - has lipopolysaccharides in outer membrane of cell wall
Is more complex - more resistant to antibiotics
Penicillin works by hindering the cross linking in the peptidoglycan - malfunction of cell wall & bacteria dies
Doesn’t hurt humans because our cells don’t have cell walls or peptidoglycan

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7
Q

Cell wall extensions

A

Some prokaryotes have a capsule on the outside of a cell wall
It is sticky and composed of polysaccharides or proteins
Allows prokaryotes to stick to substrates or each other (from colony)
Protects against dehydration
Offers protection from immune system of a host
Fimbriae - hair like projections
Allow prokaryote to stick to substrate, each other to a host
Sex pili - an appendage used to connect 2 prokaryotes prior to x-fer of DNA from one cell to the next

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8
Q

Motility

A

1/2 of all prokaryotes are capable of directional movement
Moves toward or away from a stimulus to food & nutrients
From predator, environmental damages
Primary structure of motility = flagella
May be arranged all over cell or [] at ends

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9
Q

Internal organization

A

How carry out cellular respiration without mitochondria?
Folds in cell membrane mimic the cristae of the mitochondria
How photosynthesis without chloroplast?
Thykaloid membrane used in photosynthesis

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10
Q

Genomic organization

A
  1. A single circular chromosome located in the region called nucleoid
    2 small circular pieces of DNA called plasmids (have very few genes)
  2. Like other DNA plasmids = self-replicating
    Use to transfer DNA from one cell to another
    Prokaryotes have less RNA, less protein& smaller ribosomes than eukaryotes
    Smaller ribosome allow some antibodies to block protein synthesis - the prokaryote dies (erythromycin, tetracycline)
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11
Q

Reproduction

A
  1. Mitosis, nuclear division - identical daughter cells
  2. Plenty of resources
    No predators- limited competition
    Most bacteria 12-24 hours to reproduction
    Some produce endosomes - are dehydrated& contain DNA
    Unfavorable environment = dormant
    Favorable = hydrate & full metabolic functions
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12
Q

Adaptability

A

Increase genetic variability from mutations
Can occur spontaneously
E. coli: mutation rate/gene = 1 in 10 million/ cell division
Rate - each day your intestine 2x10^10 ecoli cells are produced
2000 cells are mutated for one gene
Genome = 4300 genes – 9 million mutate Ecoli/day/person

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13
Q

Adaptability: genetic recombination

A

Transformation occurs hen prokaryote picks up DNA from the environment (from other prokaryotes)
Ex: prokaryote starts as non-pathogenic (non disease causing) — to pathogenic prokaryote (Dx)

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14
Q

Conjugation and recombination

A

Prokaryotes don’t use meiosis
Transformation: prokaryotes can take DNA that’s been left in the environment from other prokaryotes and use it in their gene sequence
Bacteriophages (phages) = viruses that infect bacteria
Occasionally phages transfer bacterial DNA from one host to the next
DNA is incorporated into the genome of the new host

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15
Q

Conjugation

A

Conjugation: genetic material is transferred between bacteria while they are temporarily joined
1. Transfer is one way
2. The ability to form mating bridge or sex pilus is due to the presence of an f-factor gene — located on a plasmid (f plasmid)
Plasmid is a circular piece of DNA that is found within a bacterium
F-plasmid creates a donor cell (f+ cell)
A copy of the f-plasmid is transferred to the recipient cell or bacterium (f- cell) - does not contain an f plasmid
Converts the f- cell to an f+ cell
The recipient cell is fertile, can produce a sex pilus too and transfer DNA
1. Chromosomal genes transferred if f-factor gene is located in bacterial DNA

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16
Q

Recombination

A

Don’t cell HfR cell = high recombination frequency
Bacterial DNA and f-factor gene is copied and inserted into recipient cell (f- cell)
Alignment of homologous regions of the bacterial DNA provided by the donor and the bacterial DNA of the recipient
Alleles for genes are swapped - any unincorporated bacterial DNA & f-factor DNA degraded or destroyed by enzymes

17
Q

Nutritional and metabolic pathways

A

Resistance

  1. Due to mutation - bacteria survive in anti-biotic rich environment, reproduce - increase population antibiotic resistant bacteria
  2. A few bacteria have a gene for antibiotic resistance - conjugation - convert non-resistant strains to resistant
  3. R-plasmid that confers resistance can have as many as 10 genes for antibiotic resistance

A virus can reproduce but not carry out metabolic activities outside a host cell: T or F Answer: False
Bacteria acquiring pathogenicity from DNA in the environment is an example of: transformation

18
Q

Roles of oxygen and nitrogen in metabolism of prokaryotes

A

Autotrophs: use carbon dioxide to make organic compounds
Heterotrophs: need at least 1 organic compound to make other organic compounds

19
Q

Metabolic cooperation between prokaryotes

A

Obligate aerobes: must use oxygen for aerobic respiration (oxygen is final electron acceptor)
Obligate anaerobes: oxygen is poisonous, use anaerobic respiration or fermentation (final electron acceptor is nitrate or sulfate ion)
Facultative anaerobes: use aerobic respiration if oxygen is available, if its not - do anaerobic respiration
Nitrogen essential for all organisms
Proteins contain nitrogen, and so do nucleic acids (base contains nitrogen)
Some prokaryotes can do nitrogen fixation
Take atmospheric nitrogen and convert it to ammonia - use nitrogen in ammonia to make amino acids and nucleic acids

Upper left: anabaena: single-celled prokaryote - exist as filamentous colony
1. Cells do photosynthesis
2. Cells do nitrogen fixing = heterocyst
Upper right: biofilm: prokaryotes of different species = colony
Send out signaling molecules, recruits other prokaryotes nearby - dental plaque
Lower picture: red archaea + bacteria-cooperation between two prokaryotic domains - anaerobically oxidizes methane
Distributed in ocean sediments, reduces amount of methane in atmosphere

20
Q

Prokaryotes role in the biosphere

A

Upper left: angler fish: lives in deep ocean, has relationship with bioluminescent bacteria
1. Located under eye of fish - attracts prey and mates for the fish
2. Fish - provides nutrients for the bacteria and habitat
Mutualistic relationship
Upper right: staphylococcus + human
1. Humans provide habitat and nutrients for the bacterium
2. Staph - neither harms nor benefits us
—commensalism
Bottom: TB bacterium + humans
1. Humans provide habitat and resources
2. TB bacterium - disease & death
- 1 benefits 1 harmed = parasitism

21
Q

Chemical recycling

A

Chemical recycling: decomposition + nitrogen fixation
Used to produce transgenic crops (genetically modified crops)
Used to convert milk to cheese and yogurt
Used in bioremediation: used to remove pollutants from air, soil, and water
Make natural plastics - biodegrade more quickly in landfills
Used to convert biomass to ethanol (fuel)
Cloning procedures
Drug manufacturing