Viruses and antivirals- Lectures Flashcards

1
Q

Almost all DNA viruses are double-stranded; the only single-stranded DNA virus is _

A

Almost all DNA viruses are double-stranded; the only single-stranded DNA virus is parvoviruses

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1
Q

Almost all DNA viruses replicate in the _ ; the exception to this rule is _

A

Almost all DNA viruses replicate in the nucleus ; the exception to this rule is poxviruses
* Poxviruses are too big to get into the nucleus and must replicate in the cytoplasm

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2
Q

Because poxviruses can’t get into the nucleus like other DNA viruses, it needs to bring its own _

A

Because poxviruses can’t get into the nucleus like other DNA viruses, it needs to bring its own DNA-dependent RNA polymerase to make mRNA in the cytosol

Other DNA viruses rely on host DNA-dependent RNA polymerase

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3
Q

Hepadnavirus is a (DNA/ RNA) virus that uses (own/ host) DNA-dependent RNA polymerase

A

Hepadnavirus is a DNA virus that uses host DNA-dependent RNA polymerase
* Howevever, it first uses its own reverse transcriptase to go from a partial ds-DNA genome- RNA intermediate –> DNA

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4
Q

All RNA viruses are (ss/ds) except for _

A

All RNA viruses are single-stranded except for reoviruses

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5
Q

All RNA viruses replicate in the host cytosol except for _ and _

A

All RNA viruses replicate in the host cytosol except for orthomyxoviruses and retroviruses

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6
Q

Only positive sense RNA viruses can serve directly as mRNA and be translated right away; ds RNA viruses and negative sense ss RNA viruses must carry _ with them to transcribe (-) sense RNA first

A

Only positive sense RNA viruses can serve directly as mRNA and be translated right away; ds RNA viruses and negative sense ss RNA viruses must carry RNA-dependent RNA polymerase with them to transcribe (-) sense RNA first

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7
Q

Retroviruses are (ds/ ss), (RNA/DNA) and they carry a special _ enzyme

A

Retroviruses are +ssRNA and they carry a special reverse transcriptase enzyme

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8
Q

What are the 3 steps of reverse transcription?

A
  1. RNA dependent DNA polymerase makes a DNA-RNA hybrid intermediate
  2. RNase degrades the RNA in the hybrid
  3. DNA dependent DNA polymerase synthesizes the second DNA strand in the cytosol –> now the dsDNA can be transported to the nucleus to be integrated into the host chromosome via integrase
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9
Q

What are the 6 steps of the viral lifecycle?

A
  1. Attachment: virus attached to host cell
  2. Penetration: virus gets into host cell somehow (endocytosis)
  3. Uncoating: capsid is degraded so that genetic material can is accessible
  4. Replication: viral DNA goes into the nucleus to be replicated and transcribed; RNA viruses do this in the cytoplasm
  5. Assembly: packaging of the virions
  6. Release: viral particles get released into the extracellular fluid
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10
Q

Enveloped and naked/non-enveloped viruses can both use _ mechanism to get into a host cell; however, only enveloped viruses will be able to use _ mechanism

A

Enveloped and naked/non-enveloped viruses can both use receptor-mediated endocytosis mechanism to get into a host cell; however, only enveloped viruses will be able to use membrane fusion mechanism

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11
Q

Enveloped viruses egress either via _ or _

A

Enveloped viruses egress either via budding from the plasma membrane or exocytosis

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12
Q

Naked/ non-enveloped viruses egress either via _ or _

A

Naked/ non-enveloped viruses egress either via cell lysis or exocytosis

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13
Q

Influenza and rhinovirus are examples of _ type infections; they are rapid onset, self-limiting, and quickly cleared by immune system

A

Influenza and rhinovirus are examples of acute type infections; they are rapid onset, self-limiting, and quickly cleared by immune system

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14
Q

Hep B, Hep C, and HPV are examples of _ type infections; there is a continuous presence of replicating virus

A

Hep B, Hep C, and HPV are examples of persistent/chronic type infections; there is a continuous presence of replicating virus

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15
Q

Herpesviruses are examples of _ type infections; there are episodic periods of viral dormancy (non-infectious) and reactivation (where there is active replication) upon a trigger

A

Herpesviruses are examples of latent type infections; there are episodic periods of viral dormancy (non-infectious) and reactivation (where there is active replication) upon a trigger

16
Q

Fifth disease (“slapped cheek”) is caused by _ virus

A

Fifth disease (“slapped cheek”) is caused by parvovirus B19 virus

17
Q

Adenovirus are viruses that can cause _

A

Adenovirus are viruses that can cause common cold, pharyngitis
* Naked, dsDNA

18
Q

Warts and cervical cancer can be caused by _ virus

A

Warts and cervical cancer can be caused by HPV (papillomavirus)
* Naked, dsDNA

19
Q

Progressive multifocal leukoencephalopathy (PML) is a rare, demyelinating disease of the CNS that can occur in the immunocompromised; it can be caused by _ viruses

A

Progressive multifocal leukoencephalopathy (PML) is a rare, demyelinating disease of the CNS that can occur in the immunocompromised; it can be caused by polyomaviruses (JC virus, BK virus)
* Naked, dsDNA

20
Q

Hepatitis B is in the _ family and it is (enveloped/ naked) dsDNA

A

Hepatitis B is in the hepadnavirus family and it is enveloped dsDNA

21
Q

HSV 1 causes _ warts; HSV 2 causes _ warts

A

HSV 1 causes oral warts; HSV 2 causes genital warts

22
Q

Acyclovir & valacyclovir are two drugs that can be used in the treatment of _ and _

A

Acyclovir & valacyclovir are two drugs that can be used in the treatment of herpes simplex virus and varicella zoster

23
Q

Acyclovir and valacyclovir work against HSV and VZV by inhibiting _

A

Acyclovir and valacyclovir work against HSV and VZV by inhibiting DNA polymerase

24
Q

Name the three mechanisms of action of Hep C drugs

A

Hep C drugs target:
1. Viral RNA polymerase: Sofosbuvir
2. Viral protease: Glecaprevir
3. Viral assembly: Ledipasvir

25
Q

Amantadine & Rimantadine are _ inhibitors

A

Amantadine & Rimantadine are M2 inhibitors
* They are viral uncoating inhibitors
* Not used much anymore

26
Q

Oseltamivir, Zanamivir, and Peramivir are _ inhibitors

A

Oseltamivir, Zanamivir, and Peramivir are viral release inhibitors
* They inhibit the enzyme neuraminidase which cleaves a protein on the outer coat of the virion to release progeny

27
Q

Baloxavir is in a third category of flu drugs, which inhibits _

A

Baloxavir is in a third category of flu drugs, which inhibits endonuclease activity

28
Q

Acyclovir and Entecavir are nucleotide analogs to _

A

Acyclovir and Entecavir are nucleotide analogs to guanosine

29
Q

Sofosbuvir and Emtricitabine are nucleotide analogs to _

A

Sofosbuvir and Emtricitabine are nucleotide analogs to cytosine