Viruses Flashcards
What does it mean for a virus to be “positive sense”?
Similar to an mRNA, it is ready for translation and does not need to bring along extra machinery (solely uses host machinery)
In general, all positive-sense RNA viruses replicate in the cytoplasm
CSF findings in aseptic (nonbacterial) meningitis
Normal glucose
No organisms
Elevated protein
What are the TORCHeS infections?
Cross the placenta and cause infection in utero —> congenital disease
TOxoplasma gondii Rubella CMV HIV and HSV Syphilis
What does it mean for an RNA virus to be “negative-sense”?
It brings its own RNA polymerase
All negative-sense RNA viruses are single stranded except _____
Reovirus (includes rotavirus and colorado tick fever virus)
What are the segmented viruses?
What is the significance of segmented viruses?
BOAR:
Bunyavirus
Orthomyxovirus
Arenavirus
Reovirus
Segmented viruses undergo antigenic variation
What are the 2 types of mutations associated with antigenic variation of viruses?
Antigenic shift: reassortment of different combos of HA and NA leading to new species; associated with PANDEMICS
Antigenic drift: point mutations in HA or NA, associated with epidemics (this is the reason for new flu shot each year)
Why is aspirin contraindicated in kids with suspected viral illnesses? What is the pathogenesis?
Can lead to Reyes syndrome — characterized by fever, rash, vomiting, liver failure, and encephalitis (can be fatal)
Result of OxPhos uncoupling in hepatocyte mitochondria
Where do viruses replicate in host cells?
In general, DNA viruses replicate in the nucleus and RNA viruses replicate in cytoplasm
T/F: all herpesviruses are enveloped
True
General characteristics of Picornaviridae family of viruses
Positive sense RNA virus
Naked (lack viral envelope)
Translated into polyprotein product and viral proteases cleave into infectious subunits
Transmission of Picornaviridae family of viruses
Fecal-oral (EXCEPT rhinovirus which is respiratory droplets)
3 clinical subgroups of Picornaviridae
Hepatitis A —> HSM
Enteroviruses (poliovirus, coxsackie A and B, echovirus)
Rhinovirus —> common cold
Is poliovirus acid-stable or acid-labile? What does this mean for pathogenesis?
Acid stable — survives in GI tract and infects Peyer’s patches (takes 2-3 weeks)
Then spreads to anterior horn of spinal cord causing asymmetric paralysis (often of LEs)
Also causes myalgias, decreased DTRs, aseptic meningitis, and respiratory insufficiency due to paralysis of diaphragm
Clinical manifestations of type A coxsackie virus
Hand, foot, and mouth disease
Red, vesicular rash
Aseptic meningitis
Infection more common in summer months
Clinical manifestations of type B coxsackie virus
Dilated cardiomyopathy
“Devil’s grip” (Bornholm’s disease/pleurodynia) — unilateral, sharp, lower chest pain —> difficulty breathing
Is Rhinovirus acid labile or acid stable? What does this mean for its pathogenesis?
Acid labile — cannot survive GI tract. It is transmitted via inhalation - which may occur via fomites (on dirty hands)
Virus attaches to ICAM-1
The virus also grows best in cooler temps (33 C), so it colonizes upper respiratory tract which acts like an air conditioner
Besides being positive sense RNA, naked, fecal-orally transmitted virus, what are some other characteristics of Hepatitis A virus in terms of acid stable vs. labile, and how humans come into contact with it?
Acid stable
Shed in feces, so it can contaminate the water supply in developing countries. In developed countries, it can be found in uncooked shellfish that were caught in contaminated water from developing countries.
It is commonly seen in traveler’s to endemic areas
Clinical features of Hepatitis A
Often clinically silent, can even be anicteric (kids usually present this way)
Active infection = fever, hepatomegaly, jaundice; symptoms last roughly 1 month
There is no carrier or chronic state
Note that smokers with Hep A develop aversion to tobacco
Characteristics of Caliciviridae (norovirus)
Positive sense ssRNA virus
Naked
Produces long polyprotein - cleaved into infectious subunits by viral proteases
Where is norovirus commonly found and what is its clinical presentation?
Often occurs with many people in close quarters — 90% of cruise ship diarrheal illness! Also occurs in daycare, schools, or with consumption of shellfish at buffets.
Causes viral gastroenteritis —> explosive, watery diarrhea
Characteristics of Flaviviridae family of viruses
Positive sense RNA virus
Enveloped
Non-segmented
What diseases are caused by the Flaviviridae family of viruses?
Hepatitis C
Dengue fever
Yellow fever
West Nile Virus
Characteristics of Dengue fever
Vector = aedes mosquito
Infects bone marrow; 4 types of Dengue, but type II is most important — known as “break-bone fever”
Causes thrombocytopenia and subsquent bleeding, so it is a hemorrhagic fever. Can eventually lead to renal failure and death
Vector and Clinical presentation of Yellow fever
Vector = aedes mosquito
Causes jaundice, backache, bloody diarrhea, hematemesis
Clinical features of West Nile virus including reservoir and vector, major complication, and diagnosis
Reservoir = birds Vector = mosquitos
Major complication = encephalitis; also causes myelitis leading to flaccid paralysis, seizures, and coma
Dx by PCR and serology
Hepatitis C, belonging to the Flaviviridae family, is a positive sense RNA virus and is enveloped. What is its mechanism of transmission?
Most common method of transmission is via exposure to infected blood — can be through blood transfusion, IV drug use/needle-sharing, accidental needle-sticks, etc.
Can also be transmitted across placenta, sexual transmission (although Hep B is more common this way), or breastfeeding
What allows for antigenic variation of Hepatitis C virus if it is non-segmented?
It has no proofreading 3-5 exonuclease activity in viron-encoded RNA polymerase, so there are frequent mutations
Clinical findings in Hepatitis C infection
Acute: jaundice, RUQ pain, hepatomegaly, increased liver enzymes (ALT will rise and fall within 6 months)
Chronic (note that 60-80% of cases become chronic): cirrhosis, hepatocellular carcinoma
Associated with cryoglobulins = serum proteins containing IgM that precipitate in cool temps
Characteristics of Togaviridae family (equine encephalitis, rubella)
Positive sense RNA virus
Enveloped
Long polyprotein precursor cleaved by proteases into infectious subunits
Most are arboviruses = arthropod vector (mosquitos)
Rubella is spread by respiratory droplets and has 3 different clinical presentations: neonatal, childhood, and adult. What is the classic triad of neonatal rubella?
Sensorineural deafness
Cataracts
Patent ductus arteriosus
[note that rubella also causes mental retardation, microcephaly, blindness, jaundice, pulmonic stenosis, purpuric blueberry muffin rash, and radiolucent bone lesions in neonates]
Rubella is spread by respiratory droplets and has 3 different clinical presentations: neonatal, childhood, and adult. What is the childhood presentation?
Starts as postauricular and occipital tender LAD + fever
Childhood exanthem = maculopapular rash - starts on face and moves downward, typically present 3 days
Rubella is spread by respiratory droplets and has 3 different clinical presentations: neonatal, childhood, and adult. What is the adult presentation?
Fever
Arthralgia
Arthritis
[note that rubella is more commonly seen in immigrants because they may not be immunized]
Characteristics of coronaviridae (coronavirus); what is unique about this virus??
Positive sense RNA virus
Encapsulated with helical shaped capsule = unique!
Clinical manifestations of coronavirus infection
Can cause common cold or acute bronchitis leading to ARDS
Can cause SARS or MIRS (dx by SARS Abs or PCR)
Characteristics of HIV (retrovirus)
ssRNA positive sense virus - gets converted into DNA intermediate using RT —> gets incorporated into host chromosomes —> replicates indefinitely
Enveloped
Diploid — 2 molecules of +strand RNA in each virion
What are the 3 important genetic components of HIV?
gag = p24 — capsule for RNA strands
env = gp41 (transmembrane protein) and gp120 (outer glycoprotein)
pol = reverse transcriptase
Describe pathogenesis and clinical features of HIV once it has infected host cells
Initially infects macrophages — leads to prodrome of flu-like symptoms including cervical LAD and fever lasting several weeks, affecting CD4 cells.
Can be latent for up to 10 years, followed by steep decline in CD4 cells at which time it is considered clinical AIDS (CD4 <200)
HIV gains entry to host cells via ____ in early stages, or ____ in late stages
CCR5; CXCR4
What type of cancer is associated with HIV?
Diffuse, large B cell lymphoma
How is HIV diagnosed?
ELISA (may get false negative so serial tests are needed)
Confirm with Western blot
Measure viral load and CD4 count via PCR
[test neonates using HIV-RNA and HIV-DNA nucleic acid amplification test, otherwise will always come up positive d/t mom’s antibodies]
Characteristics of influenzavirus (orthomyxoviridae); what is unique about this virus?
Negative sense RNA
ONLY RNA VIRUS THAT REPLICATES IN THE NUCLEUS
Enveloped 8 segments (antigenic variation)
What is the difference between influenza A and B in terms of antigenic variation?
A is most important because it undergoes both antigenic DRIFT and SHIFT, thus it is the cause of epidemics and pandemics
B undergoes just antigenic DRIFT, so it is associated with endemics
In a viral infection such as H1N1, what does the “H” stand for? What is the pathogenesis mechanism?
What does the N stand for?
Hemagluttinin — glycoprotein that binds sialic acid on red cells (H1, H2, and H3 in human infection); H determines cell tropism (which cells virus can bind to).
Path: Once HA has bound to a cell, it is endocytosed. The pH of the cell is then adjusted by M2 protein for viral uncoating. After replicating in the nucleus, neuraminidase (this is the N!) cleaves sialic acid to release virions
How is influenzavirus (orthomyxoviridae) transmitted? What complications are associated with it?
Respiratory droplet transmission — typical season is Dec—>Feb, so vaccine is recommended in Oct
Major complication = pneumonia (often associated with S.aureus infection)
Also associated with Guillain Barre syndrome —> ascending paralysis
What would CSF show in the ascending paralysis associated with GBS?
Albuminocytologic dissociation = High protein, Low WBC
Characteristics of paramyxoviridae (measles, mumps, RSV, parainfluenza viruses), including mechanism of transmission
Negative sense RNA viruses
Enveloped
Can have any combo of virulence factors: HA, NA, fusion protein
Transmitted via respiratory drops
Clinical manifestations and major complications associated with Measles (rubeola) including timeline
Prodromal: 4 C’s — cough, coryza (runny nose), conjunctivitis, Koplik spots (small blue-white on red background on buccal mucosa)
High fever lasting 4 days (104 F); 1-2 days after appearance of Koplik spots you see maculopapular rash - starting on face/forehead and progressing downward (likely confluent)
Major complications = pneumonia, subacute sclerosing panencephalitis (SSPE) - dx by anti-measles Ab
What virulence factors are associated with measles (rubeola) virus?
HA and fusion protein
What vitamin reduces measles morbidity and mortality?
Vitamin A