Virology Flashcards

1
Q

What reasons would you have to order lab tests?

A

O diagnosis
O screening
O Monitoring
O research

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2
Q

What are some pre-analytical errors that can occur?

A

O mislabelled sample
O incorrect test tube used
O pt ID incorrect
O form not completed properly
O test request lost
O incorrect test ordered
O sample collection error
O transport error
O incorrect sample handling

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3
Q

What tests are used in the virology lab?

A

Oserology- antibody testing
O molecular - (pcr, Elisa)

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4
Q

What viruses are common in the prenatal period? (LIST 6)

A

O CMV
O parvovirus b19
O rubella
O hsv
O HIV
O EBV
O hepatitis b+c
o varicella zoster
O zika virus

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5
Q

What viruses are common in the perinatal/postnatal period? (List 6)

A

O HIV
Ohsv
O CMV
Oenterovirus
O Varicella zoster
O hepatitis b+c
o adenovirus

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6
Q

What viruses are common in the postnatal period? (List 5)

A

O enterovirus
O rotavirus
O CMV
O varicella zoster
O hepatitis
O influenza
O adenovirus

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7
Q

How do you determine what sample to take to isolate the virus?

A

Falco-oral transmission = stool
Resp droplets = vesicle fluid
Vertical = blood

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8
Q

Specimen + test for HSV

A

O vesicle fluid
O CSF
= HSV PCR

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9
Q

Enterovirus specimen and test?

A

O throat swab / stool
= Enterovirus PCR

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10
Q

Varicella zoster specimen + test?

A

O vesicle fluid /blood / clinically
=Varicella zoster PCR
= blood = Igm

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11
Q

What type of rash is in picture 2?

A

Maculapapular

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12
Q

What type of rash is in picture 3?

A

Vesicular

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13
Q

What type of rash is in picture 4?

A

Pustules

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14
Q

What type of rash is in picture 5?

A

Bulla

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15
Q

What type of rash is in picture 6?

A

Nodules

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16
Q

Measles presentation, specimen, + test

A

O presentation
> koplik spots
> maculopapular rash
> 3 C’s = conjunctivitis, cough, coryza
O specimen = blood, throat swab within 5 days of rash
O serology = IgM/G
Swab = PCR

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17
Q

Complications of measles

A

O Otitis media
O diarrhoea
O pneumonia
O encephalitis

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18
Q

Measles treatment +prevention

A

O vaccine 6 + 12 months
O treatment = supportive (vit A)

19
Q

Rubella sx, specimen + test

A

O sx
> maculopopular rash
> many asymptomatic
O specimen
>blood = IgG/M (older)
> throat swab = PCR (congenital)

20
Q

Complications of congenital rubella

A

O miscarriage
O congenital rubella syndrome ( healing loss, heart defects, glaucoma cataracts )
O abnormal fetal growth

21
Q

HHV 6/7 sx, specimen, test

A

① fever without rash
② rash without fever

Specimen = clinical/blood (IgG/M or PCR)

22
Q

Parvovirus sx, specimen, test

A

Sx
O slapped cheeks malar rash
O trunk maculopapular rash

Specimen = blood (IgG/M or PCR)

23
Q

Mumps sx, specimen, test

A

Swelling of the parotid gland (parotomegaly)
Specimen = blood/ buccal swab (IgG/M or PCR)

24
Q

CNS viruses, specimen + test

A

Enterovirus, Mumps, HSV 1, rabies -“ panel” done which screens for all ( CNS viral)
All CSF = PCR
Except rabies ( saliva = PCR )

25
Polio specimen + test
O 2 stool,s 2 days apart within 2 weeks of sx =PCR and cell culture
26
What is pathognemonic of HSV infection
Dendritic ocular ulcer
27
Resp viruses, specimen + test
Nasopharyngeal swab →PCR
28
HIV diagnosis protocol
O > 24months = serology (ELISA) → antibodies x2 + tests O <24 months = HIV PCR (antibodies may be from mom) → x2 + tests * exception = 18 - 24m: screen first with serology, lf positive, confirm with PCR Injury on duty = serology HIV = own test tube
29
How is covid-19 transmitted ?
O resp droplets > 5 micrometers, travel < 1m O direct contact O indirect contact
30
Complications of SARS COVID-19 ?
Pneumonia ARDS Septic shock Acute kidney injury Death
31
Risk factors for covid-19 complications
O hypertension O older age O diabetes O obesity O COPD O cardiovascular disease O malignancy
32
Drugs used for covid19 treatment
① dexamethasone (steroid) ②antivirals > protease inhibitors - paxlovid > nucleoside analogues - remdesivir > monoclonal antibodies - sotrovimab ( strain variant specific)
33
What is the 90 -90 - 90 target?
① 90% of HIV + pt will know their diagnosis ② 90% of HIV pt have access to treatment ③ 90% of already diagnosed on treatment will have VL LDL
34
What does me "test and treat" HIV guideline say?
Treatment will be initiated after confirmation of HIV infection (regardless of CD4 count level) * crypococcus + Tb meningitis = defer tx 4-6 weeks
35
What is the 1st line HIV regimen?
3TC + TDF + DTG ( >35kg +>10y) Lamivudine + Tenofavir + dolutegravir
36
How do you know when 1st line ARV’s are failing?
Vl >1000 for 3 months with compliant patient
37
ARV side effects
O git → diarrhoea, nausea O rash O neuro → dizziness, headaches, vertigo O weight gain
38
Which hepatitis lead to chronicity and what does it lead to?
Hep b+c > cirrhosis > liver ca > liver failure
39
What test do you do for hep B?
O acute anti-HBs HBsAg O chronic HBsAg Total anti-HBc
40
HBV treatment
Tenofevir Lamivudine
41
What is gold standard of HCV active infection?
Detection of HCV RNA
42
HCV treatment
O pegylated interferon and ribavirin = standard
43
What is the polio vaccine called?
OPV ( oral )
44
Hpv vaccine
Gardasil (9 - 26y)