Viral Disease Flashcards
List the 5 categories of testing techniques available for the diagnosis of viral disease
- Virus isolation in cell culture
- Electron microscopy
- Specific viral antigen detection
- ELISA
- Fluorescent antibody
- Immunoperoxidase
- Immunohistochemistry
- Nucleic acid detection
- PCR
- In-situ hybridisation
- Serological testing for specific antibodies
What is meant by recombination in virology.
How may recombination occur naturally, providing an example
- Recombination is a process by which pieces of DNA or RNA are broken and recombined to form new alleles
- The process is different from mutation in that it “shuffles” the DNA / RNA to produce a new allele
- This process can occur naturally when two separate strains invade the host cell at the same time
- The formation of FCoV class II were likely a recombination of FCoV I and CCoV. This recombination process changed the spike protein gene in the FCoV class II versus the class I virus.
Briefly explain the use of serological testing to assess vaccine protection
- Serological testing utilises purifed antigens of a specific virus or disease to “capture” antibodies in the serum of the patient tested
- Serological tests can identify the presence of different antibody types such as IgM, IgG, IgA
- Specific concentrations (titres) of the relevant antibody can be determined
- The presence of a specific defined titre level can be considered to be protective against the disease caused by the specific antigen (virus or other)
- Other factors need to be considered over and above the specific antibody titre
- breed
- environment (potenital risk of exposure)
- immune status including potential immunosuppression
Briefly describe the process of PCR and what is tested
- Polymerise chain reaction (PCR) testing utilises heat cycling to allow rapid multiplication of small segments of DNA
- The small segment of DNA is usually a small specific segment of an organism or product produced by an organism such as a toxin
- A DNA template is used to identify the segments of DNA to amplify
- This template can detect even minute amounts of the appropriate DNA
- The DNA is initially denatured by using a high temperature (~90 degrees)
- This breaks the hydrogen bonds and yields two separate DNA strands
- The sample is cooled to 50-65 degrees to allow binding of primers to the 3’ end (annealing)
- The sample is cooled further to allow the specific DNA polymerase to synthesise a new DNA strand, complimentary to the original
- repeated cycles leads to exponential amplification as follows
- single piece of DNA = 2 strands
- 2 to the power of the number of cycles
- 230 = 1,073,741,824 copies
How does RT-PCR differ from traditional PCR
Note specific sample handing differences
- RT-PCR is used to identify specific RNA sequences
- The process is essentially the same as for PCR following the initial step
- The RNA segment of interest is initially converted into a DNA segment via the use of the enzyme reverse transcriptase
RNA is more fragile than DNA, so denaturing or degradation of the sample needs to be avoided. This can lead to an increased false negative rate
Describe the retrovirus replication cycle
- Virus particle binds to a CD4+ surface molecule
- This allows for binding and fusion of the virus envelope with the cell membrane
- RNA genetic material enters the cell
- Reverse transcriptase converts the viral RNA to DNA
- The DNA translocates into the host cell nucleus
- With some viruses this can only occur during mitosis while in other such as HIV, penetration of the nuclear membrane is independent of cell cycle
- The viral DNA is integrated with the host nuclear DNA
- The viral DNA undergoes transcription to RNA which then translocates back into the cytoplasm
- Splicing of the transcripts occurs
- Translation of the RNA enables formation of new viral proteins and membranes
- The new viral particles are assembled and released via budding of the host cell membrane
Based on the known mechanisms of infection and replication of viruses, list some of the potential targets for anti-viral medications
- Nucleoside reverse transcriptase inhibition
- Non-nucleoside reverse transcriptase inhibition
- Nucleoside analog DNA/RNA synthesis inhibition
- Nucleotide synthesis inhibitors
- Receptor antagonists
- Neuraminidase Inhibitors
- Ion Channel Blockers
- Peptides
- Immune modulation - interferons
- Cytokines / growth factors
- Inducers of cytokines / interferons
Describe the mechanism of action of and clinical indications for the use of famcyclovir
Describe the mechanism of action of and clinical indications for the use of remdesivir
- Remdesivir is a nucleoside analogue prodrug
- The prodrug is cleaved to form GS-441524 monophosphate
- This compound is delivered into the cell where is is converted to GS-441524 triphosphate
- This compound is a ribonucleotide analogue inhibitor of viral RNA polymerase
- Inhibition of RNA polymerase, inhibits the replication cycle of the target virus
- A study from Pedersen et al in 2019 JFMS looked at a 12 week course of GS-441524 in 26 cats, 25 of which were long term survivors
Describe the mechanism of action of and clinical indications for the use of oseltamivir (Tamiflu)
- Oseltamivir is a neuraminidase inhibitor
- Active against the viruses that contain neuraminidase - influenza, parainfluenza and paramyxoviruses
- Competitive inhibitor of sialic acid, part of the viral enzyme that cleave sialic acid residues on the cell surface
- This blocks the viral progeny from being able to leave the host cell
- May be useful in treatment of avian influenza in cats
- Might also be effective for canine influenza, but this is generally a mild and self limiting disease
Describe the mechanism of action of and clinical indications for the use of feline interferon omega
- Feline interferon omega is a recombinant product produced by baculoviruses that contain the feline IFN product that replicate in silkworms after infection
- Feline IFN is then purified out of the homogenised silkworm preparation
- IFN-o has antiviral and anti-tumour activities in vitro
- Distirbuted primarily into the liver and kidneys
- Catabolized rapidly, mainly in the kidneys
- Excreted by the kidneys with minimal residual accumulation
- Not shown to be beneficial in the treatment of FIV when used in an acute course
- Shown to provide a survival benefit in FeLV, but mechanism was not proven
- Not beneficial for the treatment of FHV associated conjunctivitis
- Placebo controlled double blinded study on FCoV showed no survival benefit with the addition of Feline IFN compared to placebo
- Survival benefit shown in a study that assessed acute CPV infection in dogs when compared to placebo
- While no controlled studies
Describe the mechanism of action of and clinical indications for the use of L-Lysine
- Reduced viral replication is attributable to antagonism of arginine by excess lysine
- ~28% of the human host cell protein fraction of the histone layer around DNA is lysine, 3-4% arginine
- These ratios are reversed for the capsid coat around the DNA core of the herpervirus
- Lysine may act as an analog for arginineor compete for cellular transport mechanisms
- Reduced production of the capsid coat and reduced viral replication
- Aopted from human medicine where is suppreses clinical manifestation of herpesvirus infection.
- Studies have shown both delayed signs of infection and reduced severity of signs in both acute disease and after reactivation of latent infection
- Can also reduce viral shedding
Briefly describe the canine coronavirus structure and etiology
- Several strains have been identified - CCoV I and CCoV II with two strains of CCoV II noted as a and b
- These canine coronaviruses are closely related to the feline CoV and a transmissable GE virus of swine
- Single stranded, positive sense RNA, enveloped with large numbers of spike proteins on the outer capsid
- Susceptible to detergents and inactivated in the environment after ~40 hours at room temperature, 60 hours when refrigerated and < 1 hour at temperatures > 65 degrees C
- Replication occurs within the host cell cytoplasm
- RNA is directly transcribed by the ribosomes in the RER
Describe the pathogenesis of Canine Enteric Coronavirus
- 1-3 day incubation with shedding from 3-14 days in the faeces
- PCR has detected virus particles in the faeces for up to 6 months
- After ingestion, they are taken up by the mature intestinal epithelial cells
- Also see uptake by the M cells of the Peyers’patches with virus antigen transported to the underlying lymphoid tissue
- This may help lead to latency of infection
- The virus rapidly replicates in the mature epithelial cells while the crypts are spared
- Epithelial cells rupture and the brush border microvilli become short, distorted or lost
- This leads to markedly reduced absorptive capacity
- Epithelial cells rupture and the brush border microvilli become short, distorted or lost
- Crypt hyperplasia develops to replace the lost mature cells - see various degrees of villus atrophy and fusion
- Mononuclear infiltration of the LP occurs
Briefly note the eitiology and pathogenesis of canine pantropic coronavirus
- Pantropic Coronavirus arised from a mutation from a type IIa canine coronavirus
- Alterations in the CCoV type IIa enable the pantropic strain to invade and infect tissues remote from the GIT
- This ability is likely derived from a mutation int he spike protein gene
- The clinical disease is more similar to parvovirus than enteric coronovirus type I
- Severe haemorrhagic enteritis with serosanguinous abdominal effusion can be seen with pulmonary consolidation, renal infarction and abdominal lymphadenomegaly
- Viral antigen can be detected by IH staining within macrophages in inflammatory sites and within arterial walls
- The disease has many characteristics in common with FIP
Briefly discuss the aetiology of feline parvovirus and the disease feline panleukopenia
- Non-encapsulated, single stranded DNA virus, genetically very similar to other parvoviruses including CPV
- The feline disease can be caused by canine parvovirus
- FPV can survive up to 1 year at room temperature in organic material or on solid fomites
- 5-10 months outside in organic material
- Heat and drying accelerate inactivation
- Can survive ammonium disinfection, but killed by bleach at 5.25 %
Discuss the epidemiology of feline parvovirus infection
- FPV is essentially ubiquitous int he environment and can infect all members of the family Felidae
- Virtually all susceptible cats are exposed within the first 12 months of life
- 75% of unvaccinated, clinically healthy cats have demonstrable antibody titres by 1 year of age
- Disease outbreaks tend to parallel the seasonal nature of susceptible newborn kittens
- Short shedding time and prolonged environmental contamination mean that transmission is usually via contact with contaminated premesis
- Fomites play an important role in transmission
- Insects are also likely to play an important role in transmission in warmer months
- Virus particles are present / shed in all bodily secretions in the acute stage of disease, though the largest quantities are shed in the faeces
- In utero transmission occurs
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Discuss the pathogenesis of feline parvoviral infection
- FPV requires host cell DNA polymerase to replicate, so targets rapidly dividing cells
- These occur in the GIT crypts, bone marrow and lymphoid tissues
- With late prenatal or early neonatal infeciotn, neurological targeting is also seen
- Oral exposure - replication in the oropharyngeal lymphoid tissue ⇒ plasma viraemia between 2-7 days disseminates the viral particles
- Lymphoid tissue necrosis followed by proliferation
- Thymid involution and degeneration (< 9 weeks of age)
- Prenatal infection can result in immunosuppression and immune tolerance
- This can lead to prolonged shedding
- The combination of enteric mucosal barrier loss and panleukopenia predisposes to secondary infection or endotoxemia with subsequent DIC
- Co-infections can increase the severity of disease
- These can also damage intestinal epithelial cells, stimulating more rapid cell division
Describe the different presentations and clinical signs with feline parvovirus
- Prenatal or early neonatal infection can cause neurological signs
- Cerebellum is most often affected as it develops during the late prenatal and early neonatal phase (up to 9 days of age)
- Cerebrum, optic nerve / retina, spinal cord - hydrocephalus and hydrancephaly can be seen with pre-natal infection
- In utero infection
- Early fetal loss and resorption, abortion or birth of mummified foetus
- Enteric infection
- Common - when infection acquired post-natally after ~ 10 days of age
- Due to rapid replication of virus within the crypt cells
- Panleukopenia
- Rapid replication in the bone marrow stem cells or early differentiated granulocytes, monocytes and lymphocytes
Describe the routine laboratory findings in cats with clinical feline parvovirus infection
- The laboratory findings are dependent on the severity of infection together with the age at which infection occured
- For the classical post-natal / early infection that causes panleukopenia and enteritis
- Neutropenia initially due to consumption
- Leukopenia follows due to bone marrow damage
- Neutrophilia follows if there is a recovery
- Transient mild decrease in HCT and reticulocytes
- Variable thrombocytopenia - from bone marrow injury or due to secondary coagulopathy / DIC
- Biochemistry changes are non-specific - increases in liver enzymes, decreases in glucose reflect the clinical course of disease
How can a diagnosis of feline parvovirus be confirmed
- Faecal ELISA - identification of specific viral antigen
- The canine parvovirus SNAP test has good cross sensitivity at the outset of the disease
- Low viral load in the faeces following 24-48 hours post-inoculation (often prior to the onset of signs) means a diagnosis may be missed if tested later in the disease process
- Serology
- Rarely indicated for clinical cases
- Single titres do not differentiate between clinical disease and post exposure
- A four-fold rising titre 2 weeks apart can confirm active infection - though the kitten would have to survive!
- Virus isolation
- Not routinely used in clinical cases
- Genetic detection
- PCR - can detect specific parvovirus strain
- Highly sensitive test that can detect virus shedding for significantly longer than ELISA
- May detect subclinical shedding and can detect virus following MLV vaccination
- A positive result needs to be interpreted together with the clinical signs (prevalence) to minimise the risk of a false or clinically irrelevant positive
List and briefly describe the potential treatment options for kittens with clinically significant feline parvovirus infection
- Treatment is required for active infection causing enteritis and panleukopenia
- The majority of the treatment options are directed at supportive care
- Subcutaneous or IV fluids
- Antiemetics for vomiting
- Gastroprotection (if not vomiting)
- Bismuth compounds?
- Plasma or whole blood transfusion
- Heparin therapy if there is evidence of DIC and thrombocytopenia
- Broad spectrum antibacterials
- Third generation or extended penicillins with metronidazole or clindamycin with aminoglycoside
- B-vitamin (combination) therapy
- Due to anorexia and loss in diuresis / reduced absorption
- IFN-omega
- Studies in dogs have shown a protective effect
- Nutrition
- Especially after the initial period of instability and severe disease to assist recovery
Brief notes on feline rotavirus epidemiology, clinical findings and therapy
- Rotaviruses have been isolated from many species and can be idenitifed by EM
- Rotaviruses are the main enteric pathogen in humans and livestock
- Feline rotavirus is essentially ubiquitous with up to 100% of the feline population being seropositive
- Enteric disease is generally mild to subclinical
- PCR, EM, ELISA or gel electrophoresis can be used to identify the RNA from the virus
- Rarely utilised in the feline population
- The virus causes intestinal villi swelling and inflammation but not impairment to mucosal integrity
- Therapy is largely supportive and no vaccine is available
Briefly describe the aetiology of feline coronavirus infection and FIP
- FeCoV is a large, encapsulated, positive sense single stranded RNA virus
- Coronavirus have the largest RNA structure of all known viruses containing the following:
- Replicase polyprotein
- Structural proteins: spike protein, M (matrix) protein, E (envelope) protein, N (nucleocapsid) protein,
- Non-structural proteins
- FIP may arise from de novo mutation of wild type FCoV WITHIN the host cat, as opposed to direct transfer of FIP causative FCoV from cat to cat
- This is questioned with a genetic study suggesting the FIP strains were more likely ancestrally derived
- A deletion mutation in the 3c non-structural protein may help the virus invade tissues other than the gut, while an intact 3c protein is necessary for gut replication
- These RNA viruses are particularly prone to mutation and multiple strains/variants can be seen within host and even within the same granuloma
- Different variants may have differing ability to replicate in monocytes / macrophages
- Viral load has an impact on development of FIP
- There are two serotypes - FCoV I and FCoV II (likely a recombinant of FCoV I and CCoV
- Both serotypes can cause FIP