Vesicular Transport Flashcards

1
Q

Endocytosis and exocytosis

A

Endocytosis is the capture of molecules from outside.

Exocytosis allows the secretion of molecules from the inside.

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2
Q

What are carbohydrates in the membrane for

What are the proteins for

A

Cell protection and tagging.

Transport functions

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3
Q

What does the lipid bilayer contain

And what is the structure of these like

A

Rich in amphipathic molecules.

Two fatty acids- phospholipids and sphingomyelin.

Phospholipids have glycerol and one oxygen ion on the phosphate
Sphingomyelin does not have a glycerol but it still has a phosphate.

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4
Q

What are three types of phospholipids

What are their charges

A

Phosphatidylethanolamine

Phosphatidylserine

Phosphatidylcholine

Serine is the only one with a negative charge and the rest are neutral.

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5
Q

How are the membranes flexible

A

unsaturated fatty acids provide some disorder and flexibility to the membrane

They have a double bond so cause a kink in the fatty acid tail

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6
Q

What is the structure of omega 3 and 6 and where are they from

A

Omega 3 has three double bonds. The first double bond is three carbons into the chain.

Omega 6 has two double bonds and the first is six carbons into the chain.

Omega 3 is made by sea plants and then fish eat it. Omega six is made by land plants and animals eat it.

They help to keep our membranes flexible.

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7
Q

What does cholesterol do

Which lipids have the most of it

A

It has a rigid structure and helps to seal the plasma membrane preserving internal molecules.
It fills the gaps between the phospholipids to stabilise the bilayer.

Phosphatidylcholine has the most.
Then sphingomyelin
Then phosphatidylserine has the least because of its negative charge.

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8
Q

What format are the double bonds normally in

What is exposed to water and what is in the middle

A

Cis.

Polar heads are exposed to water. Hydrophobic tails are in the middle.

Cholesterol has this structure too.

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9
Q

What is the charge on the inside of the membrane and why

A

Negative because many things inside the cell such as vesicles are also negative so they are repelled from the membrane.

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10
Q

What part of the membrane is phosphatidylserine found in and how much of it is there

When will it change its position in the membrane.

A

It is only found on the inner layer of the bilayer.
Because it makes up 4% of the whole membrane it makes up 8% of the inner membrane.

It flips to the outer surface only during apoptosis.

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11
Q

What is a peripheral protein

A

Tethered to the membrane by other things.

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12
Q

How does cholesterol enter cells

A

Low density lipoprotein LDL carries cholesterol in the blood and it will bind to its receptor which is found is coated pits.

The pit invaginates and forms a coated vesicle carrying the LDL and cholesterol into the cell.
The coated vesicle uncoats and fuses with the early endosome which is acidic so LDL is released from its receptor.

The LDL receptor is taken back up to the membrane. The LDL is taken to the lysosome and digested. The cholesterol is released into the cell.

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13
Q

Why are the lysosome and endosome so acidic

A

Proton pumps

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14
Q

What does adaptin do

A

When LDL binds to the receptor adaptin binds to the intracellular tail of the LDL receptor.

It will recruit clathrin molecules that start coating the inside of the membrane. This causes the membrane to bend and invaginate and form a vesicle.

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15
Q

What can defective endocytosis cause

A

Atherosclerosis

Mutations in the LDL receptor cause accumulation of lipoproteins in the blood and the formation of plaques blocking blood arteries.

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16
Q

Clathrin structure

What does dynamin do and what happens if it’s mutated

A

Tri legged curved structure.

Pinches the vesicle off the cell membrane by hydrolysing GTP into GDP.

All the vesicles line up along the membrane but are unable to pinch off without dynamin

17
Q

COPII

COPI

Clathrin

A

Helps to form vesicles from the ER which travel to the Golgi

Helps to form vesicles from the Golgi

Helps to form vesicles from the membrane that go to the endosome

18
Q

Phagocytosis

How do vesicles form

A

Vesicle formation without clathrin and actin derived membrane invagination.

Microbe adheres to a phagocyte and the phagocyte forms pseudopods that engulf the particle.

Phagocyte vesicle fuses with lysosome and the microbe is digested.

The residue is removed by exocytosis

19
Q

What is autophagy

A

Helps to eliminate malfunctioning cell elements.

A membrane forms around the diseased organelle creating an autophagosome.

This will fuse with a lysosome and be digested.

20
Q

Why is it a problem for internal membrane compartments to fuse and what helps it to happen

A

They are all negatively charged so won’t want to fuse together.

SNARE proteins help this to happen.

21
Q

How are newly made proteins exocytosed

A

The newly made proteins move to exit sites which are randomly formed in the membrane network of the ER.
The proteins are packaged into vesicles which fuse to form transport intermediates.
These move along microtubule tracks to the Golgi.
They then exit the Golgi and move in transport vesicles pulled outwards by microtubules to the plasma membrane.
The vesicles fuse with the membrane and release the contents.

22
Q

Constitutive exocytosis vs regulated exocytosis

A

Constitutive means there is continuous secretion

Regulated means only secretion in response to a stimulus.

23
Q

How do SNARE proteins work and what do they do

Which one has a transmembrane region

A

They help fusion by overcoming the repulsion of two negatively charged membranes.

Three SNARE proteins coil around eachother to force membranes together.
Vesicular SNARE (VAMP or synaptobreuin)
Two target membrane SNAREs called syntaxin and SNAP25.
Syntaxin has a transmembrane region.

They form a tight four helical coiled coil on initial contact. SNAP25 contributes two helixes and syntaxin and VAMP give one each.

24
Q

What happens in a coiled coil and what is one helix like

A

Two alpha helixes wrap around eachother.
One side of a helix will have aliphatic amino acids and the other side will have polar residues which makes it amphipathic.

Two amphipathic helixes are aligned with their hydrophobic sides together.

25
Q

What does NSF enzyme do

A

Catalysed dissociation of SNARE coils by hydrolysing ATP.

26
Q

What does botulism do

How can you get it

What does each type of toxin do

A

The neurotoxin attacks SNARE proteins and this can lead to paralysis.
It is due to the block of exocytosis.

You can get infected after eating contaminated food.

SNARE proteins help with ach release at neuromuscular junctions.

Botulinum A cleaves SNAP25.
B cleaves synaptobrevin.
C cleaves syntaxin.

27
Q

What happens when botulinum toxin enters the synapse

A

Due to acidification is changes it’s structure and releases enzymes that cleave SNAP25 so vesicles can’t fuse with the membrane.

28
Q

How do people recover from botulinum toxin

A

Re synthesis of the damaged proteins leads to full resumption of neuronal transmission.

29
Q

What is Botox for

A

Remove wrinkles

Local muscle paralysis

Muscle spasms

Dystonais