Unit 4 Flashcards
What is the (usual) source of energy in the cell?
ATP
What are the principal sources of ATP in the cell?
Fatty acids and glucose
- glucose degridation occurs in cytosol
- terminal stages are called oxidative phosphorylation
How were mitochondria believed to be incorporated in the cell?
via endocytosis (endosymbiotic hypothesis). Inner membrane is bacterial, outer is eukaryotic
Describe mitochondrial membranes
- outer membrane is semi-permeable
- inner is much less permeable, contains most of the machinery for oxidative phosphorylation
- inner membrane SA is increased by cristae
- central space of mitochondria is the matrix
How are proteins brought into the Mitochondria?
-majority are encoded in the nucleus
-synthesized in cytosol, imported via Translocate of Outer membrane (TOM) and translocate of inner membrane (TIM)
-TOM is passive, TIM is ATP-dependent
(TOM is TIM’s passive sub)
describe fusion and fission
- fusion: plays key role in repairing damaged mitochondria. required for mitophagy.
- both depend on cellular GTPases: Mfn and OPA1 for Fusion, and Fis1 and Drp for Fission
where is most of the free energy from oxidation contained?
NADH
- during respiration in mitochondria, electrons are released from NADH and transferred to O2 to make H2O
- achieved by 4 major protein complexes embedded in inner membrane
What generates the proton concentration gradient?
- during electron transfer process, protons are pumped into inner membrane, that transport creates the gradient
- this also generates electrical potential across the inner membrane
- energy from NADH is stored as electric potential and proton concentration gradient
What doe ATP synthase do?
- made up of F1 and F0.
- F0 spans the inner membrane and forms proton channel
- F1 is bound to F0 and is the enzyme that makes ATP
- 3 protons are needed to make 1 AtP
- once made ATP is transported out via ATP-ADP antiport
How does mitochondria regulate cell death?
- cell damage induces Bak/Bax-dependent permeabilization of outer membrane
- this triggers release of cytochrome c
- cytochrome c binds the apoptosome
- apoptosome initiates caspases, and initiates apoptosis
What can cause cell death via mitochondria?
- ischemic injury resulting in MPTP-dependent permeabilization of inner/outer mitochondria membranes (cytochrome release then and elimination of proton gradient)
- no proton gradient, no ATP
- absence of gradient, ATP synthase is converted to ATPase to use up ATP
- this causes necrosis and death
Discuss some mitochondrial quality control
- damaged mitochondria produces no ATPand can generate excessive amounts of reactive oxygen (ROS) which damages cells and causes senescence
- mitochondria must control this via mAAA, iAAA, and Lon
- these recognize and degrade misfolded proteins
- mitochondria can fuse with healthy mitochondria
- elimiated with mitophagy
- if can’t fix, apoptosis
list some mitochondrial diseases
- fusion machinery issues=autosomal dominant optic atrophy (OPA1 gene)
- Charcot-Marie-Tooth neuropathy type 2A (Mfn2 gene)
- hereditary spastic paraplegia (mAAA mutation)
epithelia
- tissues that line body surfaces, cavities, surfaces of tubes/ducts/spaces in organs.
- adherent to one another
- polarized (asymmetric)
- avascular-nutrients must diffuse through
- highly diverse
apical surface
- free outer epithelial surface
- exposed to fluids/environment
basal/basolateral surface
-connected to underlying connective tissue
basal lamina
- sheet of extracellular material lines, attached to basal surface and underlying connective tissue
- different basal lamina surround each tissue type
functions of epithelia
- barrier
- absorption and transport
- secretion
- movement
- biochemical modification
- communication
- reception
endothelium
tissue faces blood and lymph
mesothelium
sheets of cells that line the enclosed internal spaces of body cavity
mucosa
moist linings of the internal passageways. surface layer is an epithelium.
epithelial to mesenchymal transition
epithelia disassemble and move into the mesenchymal tissues. there they may migrate to other locations to form new epithelia.
layers/relationships of tissue systems (GI, reproductive, etc.)
1-outer epithelium
2-CT underneath (lamina propria)
-these both typically contain lots of immune system cells and small blood vessels
-deeper layers of CT are continuous w/lamina propr., but have diff properties and house other tissues (submucosa)
skin layers
1-epithelium=epidermis
2-underlying CT=dermis
deeper=hypodermis
simple epithelia
cells arranged in single layer/sheet
stratified epithelia
more than 1 layer of cells where where outer layers don’t directly contact basal lamina
pseudostratified epithelia
not all reach free surface but all rest on basil lamina
squamous cells
flattened cells
cuboidal
cube shaped cells
columnar
taller than they are wide cells
how are stratified epithelia named?
according to their outermost layer.
tight junctions
- highly selective barrier that limits/prevents diffusion of substances between epithelial cells
- limit/control diffusion of proteins through plasma membrane bilayer
- key core proteins are occluding and claudins
adherence junction
- promote attachment, polarity, morphological organization, stem cell behavior
- contain specific cadherins that link to actin filaments/other signaling proteins in cytoplasm
cadherins
transmembrane proteins w/ extracellular domains that interact with each other, and cytoplasmic tails that bind adapters/actin filaments
desomosomes
- promote mechanical strength, structural organization
- resist shearing forces
- include cadherins that link to intermediate filaments and other adapter proteins
gap junctions
-promote rapid communication btw. epithelial cells through diffusion ions/small molecules
plasma membrane: apical domain
- contains distinct membrane proteins and distinct phospholipid content compared to basal domain
- transporter enzymes, ion channels, receptors endo/exocytosis, signaling receptors/effectors, proteins that mediate cell-cell lamina attachments
plasma membrane: basal domain
- basal-lateral domain
- protein and lipid content is similar on basal and lateral sides
transcytosis
endocytosis of substances form 1 membrane region, followed by trans cellular transport of vesicles and exocytosis form another membrane region
microvilli
- cell surface extensions that contain actin bundles connected to cytoskeletal elements in cell interior.
- increase SA to increase rate/efficiency of membrane transport/secretion
- sterocilia: found in epidemic an sensory cells in ear, sound functions
cilia
-microtubule containing extensions
1-primary cilia: single (1 cell) non motile microtubule based extension found on many diff layers. organize/promote signal transduction systems that control cell division, fate, function
2-motile cilia: related microtubule extension that move, found on specific cell types. wave to move materials.
3-sensory cilia: not motile, appear to function in sensory reception
basolateral surface modifications
- in/out folds of basolateral membrane in epithelial cells
- increase SA, seen in cells that transport heavily from basolateral surface
basal lamina
- thin sheet of extracellular material that underlies basal lamina of each epithelial tissue
- surround many other cell/tissue types.
- formed by network forming collagen, forming thin sheets of fibers that are interwoven with extracellular glycoproteins
- function: mediate attachment to underlying tissue, highways for migration of cells, establish/maintain polarity, barrier to microbes, control gene expression cells, act as tissue scaffolding
how doe epithelial cells connect to basil laminae?
- hemidesmosomes and focal adhesions
- these connections are formed by integrins
epithelial stem cells
- competent for division
- self renew (regenerate mother cell)
- produce differentiated cell types specific to each epithelia
- produce transit amplifying cells (daughters that proliferate themselves quickly, that then produce differentiated cells)
typical cell signaling pathway
- extracellular ligand secreted
- receptor in receiving cell binds, then is activated/inactivated by ligand
- downstream effector proteins
- modulator proteins promote/suppress
- can be local or far away
exocrine glands
secrete materials onto epithelial lined surfaces or the outside world
-secrete onto apical side
-multicellular
2 main components:
1-secretory units (produce/secrete bulk of secretion)
2-ducts (tubular structures that emanate out, modify secretion content)
endocrine glands
secrete substances into bloodstream
- no ducts, secrete into bloodstream
- produce specific hormones over long distances
- hormone molecules must cross basal, basil lamina, and then go through basal and endothelial layer of capillary to reach bloodstream, so most endocrine cells secrete from basolateral membrane
adeocarcinomas
cancers derived from glandular tissue
carcinomas
epithelial origin cancers
result from defects in regulatory pathways
Cystic fibrosis basics
-autosomal recessive
-multisystem syndrome, affects 1/3000 caucasians; 1/9000 hispanics.
-defect in ATP binding cassette transporter gene on chromosome 7 encoding for CFTR protein
(most common mutation is F508del)
-lung involvement is main cause of morbidity/mortality
typical clinical features of CF
- sinus: chronic sinus infections, nasal pollyps
- lung: recurrent respiratory infections
- pancreas: exocrine pancreatic insufficiency
How is CF identified?
- mostly in newborn screen
- at birth with meconium ileus
- failure to thrive
How do you treat CF?
- nutrition
- targeted lung therapies
- antibiotic therapies
- anti inflammatory treatments
- CTFR modulators
basal bodies
- core anchors from which cilia are formed
- microtubule rich cylinder from 9 triplet microtubules
- ABC tubules
- polarized structure
axoneme
- structural skeleton of cilium
- formed from doublet microtubules
- AB tubules
- plus end is at ciliary tip
- provide tracks of movement w/in cilia
transition zone
- links basal body to axoneme and ciliary membrane
- limits the diffusion of membrane and soluble protons into/out of the cilium
ciliary membrane
- continuous with cellular plasma membrane
- compartmentalized so it is distinct
intraflagellar transport (IFT)
- signaling components transport along the axoneme by IFT
- bidirectional w/ kinesin motors
- IFT-B protein complex directs moments to ciliary tip, with retrograde movement directed by cytoplasmic dynein 2 motor with IFT-A protein complex
ciliary assembly
1-centrioles/basal bodies are assembled
2- formation of cilium
centrioles and their connection to cilia
- basal bodies are derived from centrioles, so centrioles change btw function at centrosomes to organize cellular carry of microtubules during interphase/mitosis
- centriole duplication occurs during G1-S, tightly regulated to limit to a 1x replication during the cell cycle
- older centriole is mother basil body in subsequent G1
ciliogenesis
- occurs during G1
- assembling from the mother centriole (distal end of basal body is capped by ciliary vesicle)
- microtubule doublets assemble int ciliary vesicle
motile cilia
- required for movement of fluid in respiratory, neural, reproductive tracts
- produced by axonemal dyne dependent sliding motion
- 9+2 arrangment
non motile/sensory/primary cilia
- possess 9+0 arrangement
- lack axonemal dyne arms
- signaling functions
what can cilia sense?
- physical stimuli, light, chemical stimuli
- these can all produce downstream effects
ciliary node
- establishes R-L asymmetry in the body
- node=invagination of cells formed during gastrulation on mid plate
- nodal cilia=9+0 organization and beat in rotary fashion
- angled to form leftward flow
extracellular matrix (ECM)
- structural fibers, glycoproteins, and polysaccharides secreted by a relatively small number of cell
- common origin from precursors
- near body surface forms nearly continuous compartment of relatively loose and easily distinct layers of connective tissue
deep fascia
- tougher region of dense, connective tissue including epimysium of muscles
- organized into specific functional units (ligaments, joints, tendons, capsules, coverings)
functions of connective tissues
1-provide mechanical strength/support
2-conduct/control exchange of nutrients, metabolites, signaling ligands
3-directly control the behavior and functions of cell that contact the ECM
regulatory functions of CT
- control epithelial polarization, shape
- guidance, regulation of cell migration through matrix
- control of cell proliferation, differentiation, metabolism
- defense against infectious agents
- control tissue formation, organization, modification
- control of inflammation
resident cells of CT
produce and secrete components of ECM, many can proliferate to produce new connective tissue
mesenchymal cells
precursors to all the connective tissue family members. primarily function embryogenesis
fibroblasts
pre-eminent cells of most connective tissues in the body
myofibroblasts
derivatives of fibroblasts are capable of smooth muscle-like function, found in connective tissues that require contractile function. Generated at site of wounds
adipocytes
derivatives of fibroblasts and or primitive mesenchymal cells. founding adults-store fat as energy for other cell types
osteoblasts and osteocytes
make bone
osteoclasts
break down bone
chondrocytes
make cartilage
smooth muscle cells
make some of the extracellular matrix components which they are embedded in.
immigrant blood-derived cells
white blood cells that are produced from blood cell precursors in the bone marrow and migrate from blood into connective tissues. Part of the immune system
lymphocytes
central to acquired immunity to foreign organisms/viruses/materials
macrophages
large “engulfing” cells that phagocytose: cells, ECM, other non-cellular material. critical regulatory cells that secrete and respond to extracellular signals
physiological functions of macrophages
engulf invading microorganisms
promote blood vessel formation (angiogenesis)
remodel damaged tissue
remodel normal developing tissue and organs as part of morphogenesis
neutrophis and eosinophils
important for defense against microorganism
mast cells
secretory cells that release various responses to immune signals (vasodilators)
osteoclasts
phagocytic cells that appear to be derived from blood monocytes, similar to macrophages. function in bone resorption
fibroblasts
central CT cell type that make the components of he extracellular matrix of most connective tissues.
- secretory machines (produce fibrous proteins, proteoglycans, other components of ECM), capable of dividing to make new fibroblasts, more made in response to injury
- made up of a collection of diverse, closely related cell types
- developmentally flexible (transform into other connective tissues cell types)
ECM components
- structural fibers which provide mechanical strength and resiliency
- hydrated gelatinous material (ground substance) where structural fibers are embedded
- numerous extracelluar macromolecules