unit 3 Flashcards

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1
Q

temperature on amylase + starch hypothesis

A

as temperature increases, the rate of reaction will increase until an optimum is reached, after the rate will decrease as the enzyme denatures.

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2
Q

temperature on amylase + starch equipment list

A

Amylase (1%), starch (1%), pH buffer (7), iodine, spotting tile, 5ml pipettes, test tubes and test tube rack, marker pen, thermometer, water bath

5ml pipettes to measure 5ml of each solution is accurate because equipment has low percentage error

pH buffer because pH affects rate of enzyme reactions (tertiary structure, H-bonds and ionic bonds)

Electronic water bath and thermometer because more accurate than Bunsen burner for maintaining and controlling temperature

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3
Q

effect of temperature on amylase + starch method

A

Independent variable - temperature, 20-60 ℃, go up in 10 ℃

Dependent variable - time taken (s) for orange iodine to stay orange, continuous data to be recorded in results table (you could sketch the results table…), using a stop watch which goes to 0.00 of a section so that time in seconds is precise and accurate to 0.005s

Amylase and pH buffer added and heated to desired temperature in one tube
Starch heated to a desired temperature in another separate tube
Ensure reaction mixtures are at desired temperature before mixing, because reaction will start as soon as starch is added and chemicals won’t be at temperature initially

Compare results to a negative control - well with just iodine, well with iodine and amylase only, well with iodine and pH buffer - to ensure that they don’t affect results and that only starch affects results

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4
Q

effect of temperature on amylase + starch data analysis

A

Time taken (s) will be collected at least 2-3 times and an average will be calculated after discounting anomalies to get a reliable average

Average time taken will be converted into rate of reaction

Looking for clear end point (iodine to stay orange) so rate = 1/time

Rate = s-1

Rate will be in decimals, so convert to standard form as X10negative-power

Line graph will be drawn showing rate (s-1in standard form) (on Y axis) against temperature (℃) (on X axis) (you could sketch the graph…)

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5
Q

effect of temperature on amylase + starch health and safety

A

Iodine - irritant - low risk - wear gloves
Glassware - sharp edges - low risk - clear away ASAP
Safety goggles
Lab coat and Disposable nylon gloves

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6
Q

effect of temperature on amylase + starch control variables

A

volume and concentration of amylase
volume and concentration of starch
pH

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7
Q

effect of increased substrate on enzyme controlled reaction hypothesis

A

As the concentration of HP increases, the rate of reaction catalysed by Catalase (volume of oxygen) will increase.
Because, there will be more collisions between HP and the Active sites of Catalase – so more ESCs.

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8
Q

effect of increased substrate on enzyme controlled reaction equipment list

A

Catalase from yeast – because its an easy and cheap source of liquid catalase.
Hydrogen peroxide (0%-10%, 2% intervals).
Gas syringe – to measure the volume of O2 gas released (cm3)
Stopwatch – to accurately measure time (seconds for precision).
Clamp and Boss stand – secure test/safe…
Thermometer and water bath to measure temperature (°C)
pH buffer (7)
10ml pipettes (with 1ml intervals) to accurately measure out volumes (0.5ml percentage error)
Equipment,
Techniques
Procedures

Justification – precision, accuracy, percentage error and potential error

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9
Q

effect of increased substrate on enzyme controlled reaction method

A

Independent V – Concentration of HP (range and intervals %)
Dependent V (raw) – Volume of O2 (cm3) collected over 10 second intervals for 4 minutes.
Dependent V (processed data) – rate of reaction (volume oxygen produced / 4 minutes) = cm3/min-1)
Draw the results table….
Independent variable – what range will be selected and what intervals will be used, is the data going to be continuous or discrete, what units will be used
Dependent variable – how it will be measured, what units will be used (precision and accuracy)
A numbered and logical step-by-step account of what will be done, how it will be done and why it will be done – linked to scientific reasoning.

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10
Q

effect of increased substrate on enzyme controlled reaction data analysis

A

Processed data – rate of reaction (volume oxygen produced / 4 minutes) = cm3/min-1)
Suggest / sketch graph = line graph
(X axis – HP concentration %)
(Y axis – Rate of Reaction cm3/min-1)
3 repeats for each HP concentration used – so that… reliable average and discard anomalous results
Spearman’s Rank Correlation coefficient analysis – statistical test to determine extent of correlation.
How the raw data can be processed to make it more comparable – i.e. percentages, ratios, fractions
How the raw/processed data can be summarised – i.e. averages
Identification of anomalous results
Statistical tests to use
Results table headings
Graph type to draw

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11
Q

effect of increased substrate on enzyme controlled reaction health and safety

A

Health and safety
Hydrogen peroxide – corrosive – low risk – precautions (PPE).

Glassware – could break – cuts – low risk – precautions (PPE)

Yeast – biological contamination – low risk – precautions – autoclave samples and wash hands at the end
Hazards for equipment
Risks for method steps

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12
Q

effect of increased substrate on enzyme controlled reaction control variables

A

Temperature – affects enzymes (kinetic energy / H-bonds and Ionic bonds) – control with water-bath and check with thermometer (°C)
pH – affects enzymes (H-bonds and ionic bonds) – control with pH buffer 7 (cells are 7.2) so is close to optimum for Catalase.
Concentration of catalase – affects collisions (use 5% throughout)
Volume of yeast and catalase (5ml each)
List of controls
Why it is important to control each variable listed (i.e. how would they affect the results otherwise)

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13
Q

displacement reactions of different metals releasing thermal energy hypothesis

A

if the metal reacts with the metal salt solution then thermal energy is released because a displacement reaction has occurred. This happens because the metal is higher up in the reactivity series than the metal salt solution.

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14
Q

displacement reactions of different metals releasing thermal energy equipment list

A

weighing scale
metal salt solution
4 polystyrene cups
stirring rod
stopwatch

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15
Q

displacement reactions of different metals releasing thermal energy method

A

IV-metal DV-temperature
1. The first step when carrying out this practical is to weigh out 10g of each of the metals magnesium, zinc, lead and copper using the same weighing scale. Do this four times
2. then measure out 50ml of the metal salt solutions, magnesium sulphate,
zinc sulphate, and lead nitrate. Make sure to use the same concentration 0.1 mol/dm^3 of each. do this four times.
3. pour the first metal salt solution into the polystyrene cup and using the thermometer take the initial temperature
4. add the first metal into the salt solution and start the timer for 5 minutes
5. stir the mixture using a stirring rod at regular intervals
6. stop the clock after 5 minutes and take the final temperature
7. repeat step 1-6 3 times
8. repeat step 1-7 for each metal

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16
Q

displacement reactions of different metals releasing thermal energy data analysis

A

suitable table
calculate mean not including anomalies
plot graph
calculate standard deviation

17
Q

displacement reactions of different metals releasing thermal energy health and safety

A

broken glass-gloves
metals + metal salt solutions- irritant

18
Q

displacement reactions of different metals releasing thermal energy control variables

A

same volume and concentration of metal and metal salt solution
stir at regular intervals
pH

19
Q

effect of surface area on diffusion of sulphuric acid in agar containing sodium hydroxide and phenolphthalein hypothesis

A

The greater the surface area of the agar, the faster the rate of diffusion of sulfuric acid. This is because greater surface area enables the particles to diffuse into the cube of agar faster, as there is more area for particles to collide into. The greater the surface area, the faster the rate of reaction so will become colourless faster as sulfuric acid + sodium hydroxide → neutralisation (salt & water).

20
Q

effect of surface area on diffusion of sulphuric acid in agar containing sodium hydroxide and phenolphthalein equipment list

A

Sulfuric acid (300ml in total) - 20ml per test and trial
Agar - 5 cubes: 1 whole, 2 cut into halves, 3 cut into quarters. 4 cut into fifths, 5 cut into sixths. Note - ensure it is cut evenly per trial.
Measuring cylinder to measure 20ml of sulfuric acid
Test tube (5) - for agar
Timer - to measure the time

21
Q

effect of surface area on diffusion of sulphuric acid in agar containing sodium hydroxide and phenolphthalein method

A

Independent → surface area of agar cube
Dependent → time for colour change - processed data rate of diffusion
1 Pour out 20ml of sulfuric acid in the measuring cylinder
2 Take the first agar variation (cube) and place it in a test tube
3 Pour in the sulfuric acid whilst simultaneously pressing the timer
4 As soon as it turns colourless stop the timer and record the time.
5 Repeat steps 1-4 for all variations of the agar.
6 Complete three trials per variation to test reliability of the rate being recorded and replicability of the method

22
Q

effect of surface area on diffusion of sulphuric acid in agar containing sodium hydroxide and phenolphthalein data analysis

A

draw a suitable table
Using the averages plot the data into the graph. This will allow a clear pattern to emerge.
Rate against size (line graph) - calculate SD

23
Q

effect of surface area on diffusion of sulphuric acid in agar containing sodium hydroxide and phenolphthalein health and safety

A

Create a risk assessment prior to carrying out the experiment
Lab coat, safety glasses, gloves
Sulfuric acid → acidic, flammable, harmful, irritant → use small amounts, avoid spillages, use gloves and goggles when handling, follow instructions
Breaking glass → can cause cuts → keep test tubes away from the edge, do not use hands to clear it up, clean any cut, use goggles to avoid anything going into the eyes

24
Q

effect of surface area on diffusion of sulphuric acid in agar containing sodium hydroxide and phenolphthalein control variables

A
25
Q

Catalase and hydrogen peroxide breakdown at different pH values hypothesis

A

pH will denature the enzyme to stop / decrease the rate of reaction at extremes either side of the optimum pH for Catalase

26
Q

Catalase and hydrogen peroxide breakdown at different pH values equipment list

A

Catalase (1% yeast liquid suspension is best), Hydrogen peroxide (1% / 1 vol), pH buffers (2, 4, 7, 9, 11), 5ml pipettes, test tubes and test tube rack, marker pen, thermometer, electric hot/spin plate, gas syringe.
5 ml pipettes to measure 5ml of each solution is accurate because equipment has low percentage error.
Electric hot/spin plate (at 30℃) and thermometer because more accurate than Bunsen Burner for maintaining and controlling temperature.
A selection of pH buffers including intervals which cover an acceptable range from weak acids through to strong alkalis and including neutral

27
Q

Catalase and hydrogen peroxide breakdown at different pH values method

A

Independent variable - pH 2, 4, 7, 9, 11
Dependent variable - volume of oxygen gas produced by hydrogen peroxide breakdown (cm3), continuous data to be recorded in results table (you could sketch the results table…), using a gas syringe which goes to 1cm3so that volume of gas is precise and accurate to 0.5cm3.
2ml catalase yeast suspension will be added using a pipette for accuracy with the first pH buffer solution first (2ml in conical flask), and mixed on a spin plate to ensure catalase is exposed to the pH thoroughly.
Then the conical flask yeast pH buffer solution will have 5ml of 1 vol hydrogen peroxide added using a pipette for accuracy. A rubber bung connected to a gas syringe by capillary tubing will be immediately added to prevent loss of oxygen released from reaction.
Whilst on the hot spin plate at 30℃, the volume of oxygen gas released from catalase breakdown of hydrogen peroxide will be measured in the gas syringe (cm3). The final volume released after 4 minutes will be recorded in a results table

28
Q

Catalase and hydrogen peroxide breakdown at different pH values data analysis

A

Volume of oxygen (cm3) will be collected at least 3 times over 4 minutes and an average will be calculated after discounting anomalies to get a reliable average.
Average volume of oxygen collected over 4 minutes will be converted into rate of reaction, by dividing the volume of oxygen by 4 to get colume-per-minute (cm3min-1).
Rate may be in decimals, so convert to standard form as X10negative-power
Line graph will be drawn showing rate (cm3min-1 in standard form) (on Y axis) against pH (2-11) (on X axis) (you could sketch the graph..)

29
Q

Catalase and hydrogen peroxide breakdown at different pH values health and safety

A

pH buffers (acidic) - corrosive - low risk - wear gloves
pH buffers (alkaline) - Caustic - low risk - wear gloves
Hydrogen peroxide - corrosive / irritant - low risk - wear gloves
Glassware - sharp edges - low risk - clear away ASAP
Safety goggles - spills
Trips and spills - clean away ASAP
Lab coat and disposable nylon gloves
Water bath at 30℃ won’t be a scald risk but could get hot
Electrical equipment needs to be checked before use

30
Q

Catalase and hydrogen peroxide breakdown at different pH values control variables

A

Volume and concentration of catalase and hydrogen peroxide - because vol/conc affects rate of enzyme reaction - increasing concentration of enzyme and/or substrate affects likelihood for successful collisions between enzyme active site and substrate, so affects formation of ESC - accuracy of time taken affected.
Temperature on hot/spin plate at 30℃ - because temperature affects state - kinetic energy is needed for successful collisions between E.A.T and substrate. However, too much kinetic energy can lead to breakage of H-bonds and ionic bonds in tertiary structure of enzyme - could impact on active site shape and formation of ESC - accuracy of rate calculated affected.

31
Q

describe how reproducibility can be tested

A
  1. the experiment can be attempted by a colleague
  2. during the experiment the same method should be used
  3. an experiment could be carried out again using different equipment
  4. it could be carried out in a different place or time
  5. the results could be compared to see if results are similar or they could be compared with known data