Unit 2 - Metabolism & Survival Flashcards
what is metabolism
all of the chemical reactions that take place inside all living cells
what two types of organisms must control their metabolism in order to survive
unicellular & multicellular
name four metabolic reactions
- respiration
- protein synthesis
- photosynthesis
- starch synthesis
describe metabolic pathways
a series of chemical reactions which take place within a cell, involving several enzymes
what will the products of one chemical reaction in a metabolic pathway become in the next one
the substrate
metabolic pathway diagram… (glycolysis)
glucose
|
enzyme a
|
v
glycogen<== intermediate 1 ==> starch
(mammals) N (plants)
|
enzyme b
|
N
intermediate 2
|
enzyme c
|
v
intermediate 3
|
many enzyme controlled steps
|
v
pyruvate
what three things can metabolic pathways have?
- reversible steps
- irreversible steps
- alternative routes
alternative route diagram…
glucose————————————->
| |
enzyme a |
| alternative route
v |
intermediate 1 v
N sorbital
| |
enzyme b several enzyme
| controlled steps
N |
intermediate 2 |
| |
enzyme c |
| |
v |
intermediate 3 |
|——————————————v
many enzyme controlled steps
|
v
pyruvate
fermentation in mammals and fermentation in yeast equation
mammals:
pyruvate <=========>lactate
yeast:
pyruvate ===> CO2 + ethanol
name and define the two types of metabolic pathways
- catabolic:
involve breaking down (degrading) large
molecules into smaller ones - this
releases energy - anabolic:
involve building up (synthesising) large
molecules from smaller ones - this
requires energy
give an example of each type of metabolic pathway (catabolic & anabolic)
catabolic:
respiration
(glucose + oxygen ==> CO2 + water)
anabolic:
protein synthesis
(amino acids ==> protein)
name two structures with membranes
- chloroplast
- mitochondria
what does a chloroplast include inside it
inner membrane, granum, stroma, thylakoids, outer membrane
what does a mitochondria include inside it
cristae, outer membrane, central matrix, inner membrane
name three ways materials can pass through the membrane
- diffusion
- osmosis
- active transport (pump mechanism)
name three functions of proteins in the plasma membrane
- protein pores (diffusion)
- pumps (active transport)
- enzymes (ATP synthase)
where are the proteins in the plasma membrane embedded
in the phospholipid membranes
what are some of the proteins embedded in the cell membrane and what do they do
enzymes which catalyse the steps in metabolic pathways
what are metabolic pathways controlled by
the presence or absence of particular enzymes
give three reasons why are enzymes essential to metabolic pathways
- they speed up chemical reactions
- they remain unchanged after the
reaction so can be used again - they lower the activation energy
required to carry out the reaction
what is induced fit
when the active site changes shape to better fit the substrate after the substrate binds
what are the three steps to induced fit during an enzyme catalysed reaction
- reactants bind to the active site in a
specific orientation, forming an enzyme-
substrate complex - interactions between enzyme and
substrate lower the activation energy
required - products have a lower affinity for the
active site and are released. enzyme is
unchanged after reaction
do substrate molecules/products have a low or high affinity for the active site and what does this result in
substrate molecule(s) have a high affinity (attraction) for the active site so will bind readily.
products have a low affinity, allowing them to leave the active site, free to catalyse another reaction.
what three things is enzyme action affected by (expand on no. 3)
- temperature
- pH
- substrate concentration - if the substrate conc. is low, the rate of reaction is low. this improves as the substrate conc. increases. as substrate conc. increases further, the rate of reaction remains constant.
explain the effect of increasing substrate concentration on enzyme activity (at low concentration…)
at low substrate conc., many of the active sites on enzymes are not occupied, therefore there is a low rate of reaction. as substrate conc. increases, more enzymes are able to catalyse reactions so there is an increase in the rate of reaction. as substrate conc. increases further there is a plateau as all of the active sites on enzymes are occupied by substrates
what does the presence of a substrate or the removal of a product do to a sequence of reactions in enzyme action
drive a sequence of reactions in a particular direction
define inhibitors
substances which can slow down the rate of an enzyme
state the two main types of inhibitors
- competitive
- non-competitive
where do competitive inhibitors bind to on an enzyme
they have a similar shape to the substrate so they also fit the enzyme’s active site and bind there
what happens when a competitive inhibitor joins the enzyme
it prevents the substrate binding, therefore reducing the number of substrate molecules being used by the enzyme
how is the effect of a competitive inhibitor reversed
by increasing the substrate concentration. with more substrate molecules present, there is a higher chance that the active site will be occupied by a substrate molecule rather than the inhibitor.
when is the maximum rate of reaction achieved during increasing substrate concentration
when the inhibitor is out-competed by the substrate
where do non-competitive inhibitors bind to on the enzyme and what does this result in
they don’t interfere with the active site and instead bind to another part of the enzyme. this results in the shape of the enzyme being altered so the active site’s shape is also altered. the substrate can now no longer fit the enzyme’s active site and therefore the reaction cannot take place
can the effect of a non-competitive inhibitor be reversed by increasing substrate concentration?
no
give examples of non-competitive inhibitors
heavy metals like lead and silver
what is end product feedback inhibition
another way a metabolic pathway can be regulated
how does end product feedback inhibition work
as the conc. of the end product builds up to a critical level, some of the product binds to an earlier enzyme in the pathway and blocks this enzyme’s action, preventing further (unnecessary) synthesis of the end product
what three things each play a part in controlling metabolic pathways
- competitive inhibition
- non-competitive inhibition
- feedback inhibition
what is ATP used for and give three examples of these things
to transfer energy to cellular processes which require energy
1. muscle contractions
2. synthesis reactions
3. active transport
what is ATP made up of
one adenosine and three inorganic phosphate groups (Pi)
define phosphorylation
addition of phosphate group
what two reactions does ATP act as a link between
energy-releasing reactions and energy-consuming reactions
what is glycolysis and where does it occur
it is the first stage of aerobic respiration and it occurs in the cytoplasm
does glycolysis require oxygen
no
what happens during glycolysis
glucose (a 6 carbon molecule) is broken down into 2 molecules of pyruvate (a 3 carbon molecule) in a series of enzyme controlled reactions.
what is ATP required for in glycolysis
the phosphorylation of glucose and intermediates during the series of reactions
how many molecules of ATP is generated during glycolysis and what is the process to get to that conclusion
there is an investment of 2 ATP molecules in the energy investment phase and 4 ATP molecules are generated during the energy pay off stage. resulting in a net gain of 2 ATP
what bond are the carbons held together by in a 6C glucose molecule
hydrogen bonds
what happens when the glucose molecule is split during glycolysis
hydrogen ions and electrons are released and must bind to a carrier
what is the hydrogen carrier during glycolysis
NAD which becomes NADH when carrying hydrogen ions
what is the name of the enzyme that removes hydrogen ions and electrons from the glucose during glycolysis
dehydrogenase
what are the hydrogen ions and electrons temporarily bound to during glycolysis
a coenzyme (NAD) which acts as a hydrogen acceptor and carrier
where does NAD carry the hydrogen ions and electrons to during glycolysis
to the Electron Transport Chain on the inner membrane of the mitochondria to be used later
where are the two sites that aerobic respiration occurs at and the function of these places
- matrix of the mitochondria- fluid filled,
containing enzymes (citric acid
cycle) - cristae of the mitochondria-folds,
increasing surface area (electron
transport chain)
what happens after glycolysis during aerobic respiration
the citric acid cycle
what happens after glycolysis at the start of the citric acid cycle and what are the steps during the citric acid cycle
- pyruvate diffuses into the matrix where
it loses a carbon atom to become acetyl - the carbon is removed as carbon
dioxide and is released from the cell - acetyl group then joins with a molecule
called ‘co-enzyme A’ , forming acetyl co-
enzyme A. the co-enzyme transports the
acetyle group to the citric acid cycle - acetyl combines with oxaloacetate to
form citrate. this is followed by several
enzyme controlled steps. this cycle will
eventually lead to the regeneration of
oxaloacetate - ATP is generated (1 molecule per
pyruvate)
(CO2 is released throughout the cycle)
- H ions and electrons are removed by
dehydrogenase enzymes. these are
accepted by NAD to form NADH - the H ions and high energy electrons are
passed to the electron transport chain
on the inner mitochondrial membrane
what is the electron transport chain (2 things)
the final stage of the respiration pathway and a collection of proteins on the inner mitochondrial membrane (cristae)
at which stage of respiration is the most ATP produced
the electron transport chain
what is the cristae made of
proteins and phospholipids (like any membrane)
what are the steps to the electron transport chain
- the NADH from glycolysis and citric acid
cycle release the electrons and pass
them to the electron transport chain - the electron transport chain is a series
of carrier proteins attached to the inner
mitochondrial membrane - electrons are passed along the electron
transport chain, releasing energy - this energy is used to pump H+ across
the inner mitochondrial membrane,
creating a higher concentration outside
the matrix - H+ then flow back in across the
membrane via molecules of ATP
synthase. This enzyme converts ADP + Pi
into ATP - the majority of the ATP produced during
cellular respiration is generated this way - oxygen is the final hydrogen acceptor
and combines with the electrons and
hydrogen ions that reach the end of the
chain to make water
how many molecules of ATP is generated in each of the following
1. glycolysis
2. citric acid cycle
3. electron transport chain
- 2
- 2
- 34
when does fermentation occur
in the absence of oxygen
fermentation in plants & yeast process…
glucose ————-
| } net gain of 2 ATP
2x pyruvate ——– produced (glycolysis)
|
ethanol + CO2
fermentation in animals process…
same as plants & yeast (glycolysis) but then 2x pyruvate goes to lactate and that step is reversible where O2 debt builds up from pyruvate to lactate but is then repaid going back the way
why is fermentation in animals reversible
because the oxygen debt can be repaid and lactate will convert back into pyruvate
how many ATP molecules are produced in aerobic respiration (per mol. of glucose)
38 ATP per molecule of glucose
how many ATP molecules are produced in fermentation (anaerobic respiration)
2 ATP (during glycolysis) from one molecule of glucose
define metabolic rate
the quantity of energy consumed per unit of time
what can metabolic rate be measured as (3 things)
- energy production (heat) per unit of
time - oxygen consumption per unit of time
- CO2 production per unit of time
what can a calorimeter be used to measure and what is recorded on it
used to measure metabolic rate and energy production (heat) per unit of time is recorded
what is a suitable control for a calorimeter experiment
replace the woodlice (organism) with glass beads (inert object)
what can a respirometer be used to measure and what is detected by it
used to measure metabolic rate and probes can be used to detect changes in CO2 concentration and O2 concentration
what happens when an organism’s metabolic rate increases to meet increasing demand for energy and what does this mean
its rate of aerobic respiration and oxygen intake increase. this means that organisms with high metabolic rates need efficient transport systems to deliver large supplies of oxygen to respiring cells
what does the heart consist of in the single circulatory system
one atrium and one ventricle
what happens in the single circulatory system and give an example of an organism which has one
blood passes through a two chambered heart once for each complete circuit of the body. e.g. fish