Unit 2 Chapter 4, 5,6 Flashcards
Kinases
are enzymes that catalyze the
transfer of gamma phosphate group from
ATP/GTP to hydroxyl groups on a specific
amino acid in a target group
Phosphatase
an enzyme that removes
phosphate group from a specific amino acid in a
target group
EGFR’s belong to a family of
receptor tyrosine kinases
EGFR include 4 types of receptors
ErbB1 (HER1),
ErbB2(HER2)
ErbB3 (HER 3)
ErbB4 (HER4
Steps of EGF signaling
- Binding the growth factor to the receptor
- Receptor dimerization
- Autophosphorylation
- Activation of intracellular transducers
- A cascade of serine/ threonine kinases
- Regulation of transcription factors and gene expression
Steps 1 and 2 of EGF binding and dimerization
EGF binds to domain 1 and 2, Domain 3 binding to EGF
This exposes domain 2 and forms a dimer with another EGF bound to EGFR
Autophosphorylation in EGF/EGFR
Dimerization enables the kinase domains of one receptor to phosphorylate the other receptor and vice versa
▪ The change in receptor conformation permits access to ATP and substrate to the catalytic kinase domain
Why is autophosphorylation crucial in EGF/EGFR?
it’s crucial for recruitment of cytoplasmic proteins
RAS
responsible for integrating growth factor signals
from membrane to nucleus
Describe ras
GTP-binding proteins and are activated when
bound to GTP and inactivated when bound to GDP
RAS-GTP binds to and contributes to
the activation
serine/threonine kinase RAF
Describe the RAS to MAP Kinase signaling cascade
Ras-GTP Binds to activation of RAF
Activated RAF phosphorylates MEK
Activated MEK Phosphorylates MAP Kinase
MAPK affects activity of trancription factors by phosphorylation
Transcription Factor
group of proteins that bind to DNA and regulate
the expression of genes involved in growth, differentiation and death
AP-1 gene transcription factor is target of
Map Kinase
AP-1 gene products activate
cyclin D genes which are critical regulators of cell cycle
Star player in regulating growth
RAS
Describe RAS activation of AKT
Ras interacts with PI3K by activating PIP 2 to PIP 3
PIP3 recruits PDK-1 and AKT to the membrane
AKT translocates to the nucleus, phosphprylates nuclear transcription factors
AKT is involved in
anti-apoptotic and survival roles
In normal cells, activated RAS is
is inactivated
immediately by GAPS protein
inactivated RAS causes
conformational change in RAS and releases RAF which then is inactivated by phosphatase
Inactivation of RAS
Brings thecell back to normal non-proliferative state
In cancer cells RAS can be
continuously activated by mutations induced by various factors
Mitated RAS cannot be inactivated by GAPS protein as in normal cells
this results in continuous proliferation of tumor cell
Growth factor signaling not only leads to cell
proliferation but also can effect
cell behaviors such as adhesion and motility
SRC
an intracellular tyrosine kinase coded by genes
src
SRC plays an important role in
cell adhesion, invasion and motility upon EGF activation (Metastasis)
Upon stimulation of EGF receptor by growth factor
the autophosphorylated receptor can interact with SH2
domain of SRC and activate the protein
One way in which SRC can be activated is
via EGF receptor
Activated SRC activates
wide range of target proteins such as focal adhesion proteins (FAK), adaptor proteins, motility proteins and transcription factors (Important in metastasis)
What pathway needs to be targeted to limit metastasis and stop FAK protein? (DESCRIBE)
EGF-EGFR-> Autophosphorylation Inactive SRC Active SRC FAK Increased motility and cell invasion (This pathway needs to be targeted to limit metastasis and stop FAK protein)
Monoclonal antibodies that block the signaling pathway prevents growth factor from binding to the receptor
Herceptin
Erbitux
Vecitibix
Monoclonal antibodies that block the intracellular domain autophosphorylation stopping
Gilotrif
Tarceva
Tykerb
Monoclonal antibody that shuts down things going into the nucleus
Mekinist (affects MEK)
Monoclonal antibodies that shut down RAF signaling
Nexavar
Zelforab
Tafinlar
Herceptin (trastuzumab)
a monoclonal antibody that binds the extracellular domains of ErB2 receptor with high affinity
Herceptin functions
through a combination of mechanisms including enhanced receptor degradation, inhibition of angiogenesis, cell proliferation and recruitment of immune cells, resulting in antibody-dependent cellular cytotoxicity
Erbitux has 5 mechanisms of action
Cell cycle arrest of cancer cell and inhibits proliferation, prevents metastasis inhibits angiogenesis antibody-dependent cellular cytotoxicity inhibits DNA repair mechanisms
ressa and Tarceva
small molecule kinase inhibitors that are directed against tyrosine kinase activity of EGFR family members
Imatinib (Gleevec) used for
Chronic myelogenous leukemia
(CML) accounts for 15-20% leukemias
Most CML patients carry
Philadelphia chromosome chromosome generating BCR-ABL fusion protein
Gleevec
a tyrosine kinase inhibitor that binds to ATPbinding pocket within catalytic domain and inhibits the
action of enzyme
proto-oncogenes
Normal cellular genes that can be converted to
oncogenes
RAS proto-oncogene
normal gene produces normal protein that controls proliferation
Mutations in RAS proto-oncogene
can transform it in to RAS oncogene which can cause cancers due to uncontrolled proliferation
Oncogenes
genes whose presence can contribute to uncontrolled cell proliferation and cancer
Oncogenes contain which type of mutation (Dominant/recessive)
Dominant
More than ___ oncogenes have been identified and
proteins they produce fall into different categories
100
Most proteins produced by oncogenes are
components of signaling pathways that promote cell
proliferation and survival
B-RAF Function, Protein, and associated disease
Intracelluar signal transducers
Protein-RAS
Melanoma
Myc Function, Protein, and associated disease
c-myc (Proto-oncogene)
Transcription Factors
Myc Protein
Burkitt’s Lymphoma
RAS Function, Protein, and associated disease
Intracellular signal transducers
RAS protein
Bladder and lung cancer
V-erbB
C-erbB (Proto-oncogene)
Growth Factor Receptor
EGFR (Receptor)
Breast Cancer
Chromosomal translocation
Part of the chromosome is mixed with another part of
another chromosome, altering promoter region and
amount of protein created
Gene amplification
One gene has multiple copies and is amplified in function. Elephants have multiple p53 genes compared to humans
Point Mutation
Changes a single nucleotide in the DNA sequence, changes mRNA, changes AA sequence, and changes the protein or conformation of the protein
Cellular oncogenes arise due to the following
mechanisms (convert from proto to oncogene)
Point mutations Gene amplification Chromosomal translocation DNA Rearrangement Insertional Mutations
Single mutation in RAS proto-oncogene results in
RASoncogene that produces mutated Ras protein in which single amino acid is converted from glycine to valine
Neuroblastoma with extensively amplified MYC gene are more likely to
invade and metastasize and lower survival
rates (associated with adrenal glands)
(Map Kinase applies here)
Philadelphia chromosome
abnormal version of chromosome 22 in 90% of all cases of chronic myelogenous leukemia
Translocation of ABL gene (tyrosine kinase) in
chromosome 9 to BCR gene (Serine/threonine kinase) on chromosome 22 and results in
abnormal BCR-ABL fusion gene and fusion protein
Viruses have special viral sequences at its end called
LTR’s (Long terminal repeats) which promote gene expression
How long does mitosis take?
16 hrs
How long does binary fission take?
24 mins
Cell Cycle Steps
G1 (Growth) S Phase (Synthesis) G2 (Growth) M Phase (Mitotic) Cytokinesis (Cytoplasm split)
Interphase
G1
S
G2
Proteins involved in eukaryotic DNA Synthesis
DNA polymerase Helicase Topoisomerase SSBPS Ligase RNA Polymerase
Differentiated, living cells are also called
quiescent
G0 Phase
Outside the cell cycle
Cell is non-dividing and differentiated
dependent on growth signals for division
G1 Restirciton Point
Control point in cell division
If a cell crosses it’s point, it becomes irreversibly committed to go through the cell cycle without growth factors
Cyclins
proteins that have a critical role in cell cycle
coordinate and regulate the passage of
cell through different phases of cell cycle
Cyclins act as
regulatory subunits of cyclindependent kinase (cdks).
Upon binding of cyclin to cdk partner, cyclin undergoes
a conformational change in the catalytic domain, exposing an active site.
Concentration of cyclins during cell division is
dependent on
Transcription of cyclin genes
Regulated protein degredation
Cdk proteins are regulated by
binding of cyclins.
Does S Phase have a checkpoint?
NO
Cyclin E and CDK2 role in the cell cycle
Takes the cell into S Phase
CyclinD and CDK 4 and 6 role in the cell cycle
Push the cell over the restricition point, cross through the checkpoint
Mitogen
small bioactive protein or peptide that induces a cell to begin cell division, or enhances the rate of division (mitosis).
Mitogenesis
the induction (triggering) of mitosis, typically via a mitogen.
Mitogenesis
the induction (triggering) of mitosis, typically via a mitogen.
What phases of the cell cycle have checkpoints?
G1
G2
M
G2 Checkpoint
Check to make sure cell is ready for mitosis, no mutations in DNA, no breaks in chromosomes, all microtubules ready for mitosis