Unit 2 Flashcards
phagocytosis
The process whereby particles or cells are engulfed by cells such as macrophages. Cells that undergo apoptosis are consumed by phagocytosis.
proteases
enzyme that degrades proteins
caspases
digest substrate proteins at C-terminal of Asp residue
destruction proteins, effectors of apoptosis
the name is derived from 3 of the characteristics of the enzymes: cysteine-rich aspartate proteases
autophagy
“eating oneself”
process whereby proteins and organelle components that are no longer required are targeted to the lysosomes for degredation
Which one of the following statements about the Bcl-2 family is false?
A. Pro-apoptotic members of the Bcl-2 family are Bax and Bak.
B. The release of important apoptosis mediators from the mitochondria is mediated by the pro-apoptotic members only.
C. Pro-apoptotic and anti-apoptotic members of the Bcl-2 family can interact with each other via protein-protein interactions.
D. Anti-apoptotic factors are Bcl-2 and Bcl-xL.
B
Which one of the following statements about apoptosis is false?
A. The aim of conventional chemotherapies is to inhibit apoptosis.
B. In the absence of apoptosis, conventional chemotherapies lead to the accumulation of mutations.
C. For chemotherapy to be successful, cells must be able to trigger apoptosis.
D. Gene mutations that inhibit apoptosis lead to drug resistance.
A
The aim of conventional chemotherapies is to induce apoptosis
B is true
C is true: Most conventional chemotherapies induce extensive DNA damage in order to trigger apoptosis.
D is true: These mutations serve to uncouple drug-induced damage from apoptosis and therefore these tumor cells are resistant to the drug.
Which one of the following statements about the apoptosome is correct?
A. Cytochrome B, caspase-9, ATP and Apaf-1 are components of the apoptosome.
B. Cytochrome C, procaspase-9, ATP and Apaf-1 are components of the apoptosome.
C. Bcl-2, ATP, caspase-8 and caspase-9 are components of the apoptosome.
D. Procaspase-9, Bax, cytochrome C and Apaf-1 are components of the apoptosome.
B
A - Cytochrome c and not cytochrome B is a component of the apoptosome.
C - Bcl-2 is an anti-apoptotic protein and caspase-8 is not a component of the apoptosome.
D - Bax resides in the mitochondrial membrane and allows the release of several components of the apoptosome into the cytoplasm.
apoptosome
A large quaternary protein structure formed in the process of apoptosis. Its formation is triggered by the release of cytochrome c from the mitochondria in response to an internal or external cell death stimulus.
Which one of the following statements about apoptosis is false?
A. It is an important tumor suppression mechanism.
B. It may be triggered by extracellular death signals that act via the extrinsic pathway.
C. It may be triggered by internal stimuli such as DNA damage.
D. It is unregulated cell death characterized by cell swelling.
D
Apoptosis is regulated cell death characterized by cell shrinkage. Cell death characterized by swelling is called necrosis.
A is true: Apoptosis aims to get rid of damaged cells that may otherwise lead to cancer.
B is true
C is true: DNA damage can activate the intrinsic pathway of apoptosis
Which one of the following statements is false?
A. Most anti-apoptotic genes are proto-oncogenes.
B. Mutations in Fas receptors have been found in skin cancer.
C. Oncogenic activation of Bcl-2 is associated with lymphoma.
D. Gain of caspase-8 expression is linked with lung cancer.
D
Loss of caspase-8 expression is linked with lung cancer.
Which one of the following statements correctly explains why direct apoptotic inducers may be a better drug strategy than conventional chemotherapy?
A. They bypass the need to be mutagenic and avoid therapy related leukemias.
B. They target a host mechanism and not the tumor.
C. They all involve gene therapy
D. They will target tyrosine kinase activity in order to induce apoptosis.
A
B - Direct apoptotic inducers will target the tumor. Anti-angiogenic therapies target a host mechanism.
C - Not all direct apoptotic inducers depend on gene therapy.
D - Tyrosine kinases are not directly involved in inducing apoptosis.
Which one of the statements below about the intrinsic pathway of apoptosis is false?
A. The intrinsic pathway is mediated by the mitochondria.
B. The intrinsic pathway of apoptosis depends on death factors TNF and Fas.
C. Internal stimuli, such as DNA damage and oxidative stress, induce the intrinsic pathway of apoptosis.
D. The intermembrane space between the 2 mitochondrial membranes acts as a supply cabinet for apoptotic mediators of the intrinsic pathway.
B
The extrinsic pathway of apoptosis, not the intrinsic pathway, depends on external stimuli such as extracellular death factors.
A is true
C is true - Internal stimuli, such as DNA damage and oxidative stress, induce apoptosis through the Bcl-2 family of proteins that act at the outer mitochondrial membrane.
D is true - because pro-apoptotic Bcl-2 members regulate the release of the apoptotic mediators from this mitochondrial compartment.
Drugs being developed as direct apoptotic inducers include all of the following except:
A. Smac mimetics that inhibit XIAP such as birinapant
B. 5-fluorouracil.
C. BH3 mimetics such as ABT-737 and ABT-199.
D. Recombinant human TRAIL.
B
5-fluorouracil is a conventional (anti-metabolite) chemotherapy
A - G-3139 targets Bcl-2 RNA
C - Small molecule inhibitors of Bcl-2, also called BH3 mimetics, such as ABT-737 and ABT-199 are being developed and tested in clinical trials.
D - TRAIL triggers apoptosis in cancer cells and recombinant human TRAIL is being tested in early clinical trials.
How does p53 trigger apoptosis?
A. By transcription-dependent means only as mutants that lack a DNA binding domain could not induce apoptosis
B. By transcription-independent means involving direct activation of Bcl-2.
C. By binding directly the death receptors such as Fas.
D. By inducing the transcription of genes that code for pro-apoptotic proteins.
D
P53 can induce the transcription of pro-apoptotic proteins such as Bax.
A - Mutants without a DNA binding domain are able to induce apoptosis.
B - Transcription-independent means of triggering apoptosis include direct activation of Bax.
C - P53 does not interact directly with death receptors.
Which statement about alternative cell death pathways is false?
A. Mutations in genes required for autophagy have been linked to carcinogenesis.
B. They use alternative proteases instead of caspases.
C. Important components are stored in the mitochondrial intermembrane space.
D. Drugs that induce alternative cell death pathways are not yet in clinical trials.
D
A vitamin D analog that induces calpain-dependent and caspase-independent cell death is one example of such a drug in clinical trials.
A is true - Specifically evidence for a link of mutations in the gene encoding Beclin and carcinogenesis has been reported.
B is true - Alternative proteases such as calpains, cathepsins, and serine proteases are used in alternative death pathways.
C is true - Apoptosis-inducing factor is one molecule released from the mitochondrial intermembrane space that is involved in alternative cell death pathways.
In the laboratory, scientists can detect apoptosis by which of the following methods?
A. RNA interference
B. The TUNEL technique, that uses nick end-labelling
C. Immunoassay
D. Affinity chromatography
B
This technique is able to label the 3’ ends of the many DNA fragments within an apoptotic nucleus.
A, C & D - These techniques are not specific for apoptosis. The TUNEL technique can be used to detect apoptosis.
Describe the differences between a necrotic cell and an apoptotic cell.
Necrosis :(
- cell swells, holes appear on plasma membrane, cell bursts and releases intracellular materials
- damages surrounding cells -> inflammation
Apoptosis :)
- programmed cell death
- mild convolution, chromatin condensation, breakdown of nuclear envelope, DNA ladder, proteolysis of target proteins, cleavage of chromatin, blebbing, phagocytosis of apoptotic body
- No damage to surrounding cells
IAP
Inhibitor of Apoptosis Proteins
family of proteins that are mainly known for their anti-apoptotic activity and ability to directly bind and inhibit caspases
Which one of the following statements correctly describes what happens after Wnt ligand binds to Frizzled and LRP?
a. RAR-RXR heterodimers are formed and associate with HDAC co-repressor complexes, silencing target genes.
b. Axin and APC form a complex with CKI and GSK3β which then modifies β-catenin for degradation.
c. Axin is recruited to the phosphorylated co-receptor LRP and this disrupts the APC, CKI, GSK3β complex.
d. Patched inhibits Smoothened and the pathway is suppressed.
C
The disruption of this complex allows β-catenin to escape degradation, move into the nucleus and act as a co-activator for Tcf/LEF.
A - Incorrect. These are interactions between retinoic acid receptors and HDAC that occurs in the absence of retinoic acid.
B - Incorrect. This process occurs in the absence of Wnt and the modification is the addition of ubiquitin which acts as a molecular flag for β-catenin degradation. It is not the next step after ligand binding.
D - Incorrect. These are events in the Hh pathway in the absence of Hh. Patched and Smoothened are transmembrane proteins. Binding of Hh to Patched relieves Smoothened inhibition and the signal is transduced into the cell.
Evidence that the Wnt-signalling pathway is important for self-renewal of stem cells in the adult is:
a. Tcf gene knock-out mice show lack of stem cells in the intestine.
b. Gli mutations lead to skin cancer.
c. APC mutations lead to a lack of stem cells in the intestine.
d. Tcf gene knock-out mice have an increased rate of colon cancer.
A
Tcf is a Wnt-regulated transcription factor and when deleted results in a phenotype that includes lack of stem cells in the intestine.
B - Incorrect. Gli is a transcription factor that is regulated by the Hh signaling pathway and not the Wnt pathway.
C - Incorrect. APC mutations lead to colorectal cancer.
D - Incorrect. Tcf gene knock-out mice show lack of stem cells in the intestine
Polycomb group proteins are known as “guardians of stemness”. Which statement about polycomb proteins is true?
a. They induce genes that promote differentiation.
b. They trigger the degradation of differentiation regulators.
c. They repress genes that promote differentiation by epigenetic mechanisms.
d. They repress genes that promote differentiation directly by binding to target gene promoters.
C
Repression involves chromatin compaction and recruitment of methyltransferases.
A - Incorrect. This is false. Polycomb group proteins suppress differentiation of stem cells.
B & D - Incorrect. This is statement is false. They inhibit differentiation regulators by epigenetic means.
Mutations that activate the Hedgehog signaling pathway are characteristic of which one of the following?
a. Retinoblastoma.
b. Breast cancer.
c. Colorectal cancer.
d. Basal cell carcinoma.
D
All sporadic basal cell carcinomas possess an activated Hh signaling pathway.
A - Incorrect. Mutations that inactivate Rb are associated with Retinoblastoma.
B - Incorrect. BRCA1/2 genes are associated with familial forms of breast cancer.
C - Incorrect.Mutations that result in activation of the Wnt pathway are found in colorectal cancers.
The Hedgehog signal transduction pathway culminates with the induction of target genes by which transcription factor?
a. Gli.
b. b-catenin.
c. Tcf.
d. E2F.
A
Upon binding of Hh, the zinc finger transcription factor Gli is released from the cytoplasm, enters the nucleus and regulates target genes.
B - Incorrect. ß-catenin is a co-transcriptional activator associated with the Wnt signaling pathway.
C - Incorrect. Tcf is a transcription factor that is involved in the Wnt signaling pathway.
D - Incorrect. E2F is a transcription factor which plays a role in cell cycle progression.
Which one of the following is the correct name for the treatment of acute promyelocytic leukemia by the administration of all-trans retinoic acid?
a. Differentiation therapy.
b. Apoptotic therapy.
c. Anti-angiogenic therapy.
d. Conventional chemotherapy.
A
Retinoic acid promotes differentiation of cells and its goal is to reverse the leukemic phenotype.
B - Incorrect. Retinoic acid does not directly induce apoptosis.
C - Incorrect. Retinoic acid is not involved in angiogenesis.
D - Incorrect.