Unit 11 Flashcards

1
Q

What is meant by the term gluconeogenesis? Why is this process important in animals? In what tissues does it mainly occur?

A

Process of generating glucose from non-carbohydrate precursors. Occurs in animal liver mainly.

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2
Q

Name three non-carbohydrate precursors of glucose.

A

Lactate, glycerladehyde 3-phosphate, triacylglycerols (triglycerides)

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3
Q

Why does gluconeogenesis require a pathway different than the reversal of glycolysis?

A

Three steps are irreversible in glycolysis and must be bypassed.

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4
Q

What steps in glycolysis are essentially irreversible?

A

1) Phosphorylation of glucose to glucose 6-phosphate by hexokinase
2) Phosphorylation of fructose 6-phosphate to give fructose 1,6-bisphosphate by phosphofructokinase
3) dephosphorylation of phosphoenolpyruvate to give pyruvate by pyruvate kinase

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5
Q

What is the balanced equation for the conversion of pyruvate to phosphoenolpyruvate?

A

Pyruvate + HCO3 + ATP + GTP –> PEP + CO2 + ADP + GDP + Pi

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6
Q

Name the cofactor used by pyruvate carboxylase and describe its function. What is the role of ATP in this reaction?

A

Biotin.

ATP increases the free energy content of bicarbonate and activates it so it can instead be bound to biotin/the enzyme.

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7
Q

In this series of reactions, pyruvate is first carboxylated to oxaloacetate and then decarboxylated to phosphoenol pyruvate. Why is this series of steps important?

A

The free energy of the pyruvate must first be increased in order for PEP to be favorably formed.
Carboxylation “activates” the pyruvate.

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8
Q

Discuss two alternate pathways from pyruvate to phosphoenol pyruvate. What is the purpose of the variation in the pathway from pyruvate?

A

The alternative path uses lactate as the starting precursor. Since the conversion of lactate to pyruvate produces 1 NADH in cytosol, the rest of the rxn occurs in the mitochondria.

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9
Q

Write a balanced equation for the reaction catalyzed by fructose 1,6 bisphosphatase 1 (FBPase 1). Name the type of reaction.

A

Fructose 1,6-bisphosphate + H2O –> fructose 6-phosphate + Pi
Hydrolysis

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10
Q

Write a balanced equation for the reaction catalyzed by glucose 6-phosphatase. Name the type of reaction.

A

Glucose 6-phosphate + H2O –> glucose + Pi

Hydrolysis

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11
Q

Account for the 6 ATPs required for gluconeogenesis. Remember that we are dealing with the conversion of two moles of pyruvate and that, energetically, ATP and GTP are equivalent.

A

Per pyruvate: 3 ATP (aka 2 ATP and 1 GTP) and 1 NADH
1 ATP to convert pyruvate to oxaloacetate
1 GTP to convert oxaloacetate to PEP
1 ATP to convert 3 phosphoglycerate to 1,3-bisphosphoglycerate
1 NADH to reduce 1,3-bisphosphoglycerate to glyceraldehyde 3 phosphate

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12
Q

Which other step in gluconeogenesis can be described as an energy input?

A

Reduction of 1,3-bisphosphoglycerate to glyceraldehyde 3 phosphate. Requires 1 NADH per pyruvate.

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13
Q

What is meant by a “futile cycle”? How are such cycles prevented?

A

A cycle where two opposing reactions, if allowed to continue in equal and opposite amounts, would consume chemical energy and dissipate it as heat energy without doing any useful metabolic work.
Regulation prevents the reactions from occurring in equal amounts.

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14
Q

Discuss the reciprocal regulation of phosphofructokinase 1 (glycolysis) and fructose 1,6-bisphosphatase (gluconeogenesis) by AMP.

A

AMP inhibits FBPase1 activity - slows storage of glucose when glucose is needed for breakdown to generate ATP.
AMP activates PFK1 - break down of glucose is increased to replenish ATP stores.

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15
Q

Discuss the reciprocal regulation of PFK1 and FBPase-1 by fructose 2,6-bisphosphate.

A

Fructose 2,6-bisphosphate inhibits FBPase-1 and activates PFK-1. Overall effect increases ATP production and increases circulating blood glucose by limiting uptake for storage.

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16
Q

Discuss how/when fructose 2,6-bisphosphate accumulates in cells.

A

Accumulates when the PFK2/FBPase2 enzyme is more dephosphorylated (by insulin release/lack of glucagon) which then generates more F26BP than is broken down.

17
Q

Discuss the reciprocal regulation of pyruvate carboxylase and the enzyme that prepares pyruvate for entry into the citric acid cycle, pyruvate dehydrogenase.

A

Acetyl CoA builds up when more ATP is present and the oxiddative phosphorylation chain backs up to produce more NADH.
Acetyl CoA:
- inhibits pyruvate dehydrogenase (prevents conversion of more pyruvate to Acetyl CoA)
- promotes pyruvate carboxylase (promotes gluconeogenesis)

18
Q

Discuss the Cori cycle.

A

During intense muscle exertion, lactate is produced by lactic acid fermentation in the muscles. Extra ATP produced by oxidative phosphorylation is used by the liver to convert this lactate (via the second gluconeogenesis path) into glucose. Glucose transported back to cells is stored in muscle as glycogen.

19
Q

What is the name of the enzyme complex that forms acetyl CoA from pyruvate?

A

Pyruvate dehydrogenase complex

20
Q

Write the net reaction catalyzed by the pyruvate dehydrogenase complex.

A

Pyruvate + NAD + FAD + Lipoate + CoA + TPP –> Acetyl-CoA + CO2 + NADH + free energy

21
Q

How many coenzymes are involved in the conversion of pyruvate to acetyl CoA? Name them.

A

5 coenzymes.

NAD, FAD, Lipoate, CoA, TPP

22
Q

How many enzymes are involved in the conversion of pyruvate to acetyl CoA.

A

3

23
Q

Discuss “substrate channeling”. What is the advantage of having these enzymes organized into a complex?

A

Prevents intermediates from diffusing away and being stolen by enzymes competing for the same acyl group

24
Q

Which coenzyme binds pyruvate and accomplishes the decarboxylation?

A

Pyruvate dehydrogenase (E1)

25
Q

Which coenzyme combines with E1 and accomplishes the oxidation step?

A

Dihydrolypoyl transacetylase (E2)

26
Q

Draw the structure of acetyl lipoate. (Do not memorize the structure of lipoyl lysine!)

A

7 carbon chain with 1,3-disulfide groups and linked to lysine at C7

27
Q

What happens next to the acetyl group?

A

Acetyl group is transfesterified from acyl lipoyllysine to the CoA S-H group. Released from complex as activated acetyl (Acetyl CoA)

28
Q

What are the functions of the other two cofactors in the pyruvate dehydrogenase complex?

A

FAD reduces the lypoiyllysine or lipoate back to its oxidized form so it may take the electrons and acetyl group from TPP again, and NAD oxidizes FADH to refresh FAD.

29
Q

Does it seem odd that FADH2 is strong enough to reduce NAD+ to NADH? Explain how this is possible.

A

It is an enzymatically catalyzed reaction. The protein environment decreases the reduction potential of FAD and increases its ability to act as a reductant (be oxidized.)

30
Q

How is the wasteful hydrolysis of acetyl CoA prevented in the citrate synthase reaction?

A

The hydrolysis of the thioester is much more energetically favorable, so the reaction is driven towards that rather than simply hydrolyzing Acetyl-Coa

31
Q

Using structural formulas, write the other reactions of the citric acid cycle. Note what kind of reaction is occurring at each step.

A

fdsaf

32
Q

Discuss the mechanism of action of isocitrate dehydrogenase.

A

fds

33
Q

Discuss the mechanism of coupling between high energy thioester cleavage and GTP synthesis by succinyl-CoA synthetase.

A

fds