Unit 1 Flashcards
What are the three domains of life?
Eukaryota, Bacteria and Archaea
What are the key differences between Prokaryotes and Eukaryotes?
- Size, prokaryotes are 0.2-2.0µm in diameter, Eukaryotes are 10-100µm in diameter.
- Prokaryotes don’t have a nucleus, Eukaryotes do
- Prokaryotes don’t have organelles, Eukaryotes do, e.g. Golgi, mitochondria, endoplasmic reticulum
- Prokaryotes have a cell wall, Eukaryotes do not
- Prokaryotes have smaller ribosomes (70s) than Eukaryotes (80s)
- Prokaryotic DNA is single circular chromosomes - no histones whereas Eukaryotes have multiple linear chromosomes with histones.
How does bacteria grow/multiply
By binary fission. It’s the equivalent of the cell cycle in Eukaryotes. Bacteria has a large circle of DNA + smaller circles of DNA called plasmids. When the bacteria wants to divide, the DNA is all replicated. The large circles of DNA migrate to opposite sides of the cell. The plasmids are then distributed evenly between the two sides. Then the cytoplasm and the bacteria divides creating two separate cells.
How often does bacteria divide?
Once every 20 minutes
What is artificial media?
A mixture of different compounds to help bacteria grow. This can be liquid (i.e. nutrient broth)
What are the stages of bacteria growth when counting the number of viable cells?
- Lag phase, the initial period just after the time starts
- Log phase, where the bacteria is growing exponentially (graph has a positive slope)
- Stationary phase, where the bacteria stops dividing (graph is flat)
- Death phase, where the bacteria begins to die (graph has a negative slope)
What do bacteria need to grow?
- The correct temperature
- The correct pH
- Carbon source
- Potassium, magnesium, calcium and cofactors
- Oxygen
What are the correct temperatures for bacteria (depending on temp type)?
- Thermophiles - optimal growth is 50-60 degrees celsius or below
- Mesophiles (the mid range) have an optimal growth temperature of 25-40 degrees celsius
- Psychrophiles - cold - optimal growth 15 degrees celsius or below
What is the correct pH depending on the type of bacteria?
- Most bacteria need a neutral pH of 6.5-7.5
1. Acidophiles require an acidic pH, less than pH 5.4
2. Neutrophiles pH 5.4 to 8.5
3. Alkaliphiles pH 7-12 or higher
Why must bacteria have a carbon source to grow?
- Carbon makes up 50% of the dry weight of the cell
- Helps with breakdown of lipids, proteins and carbohydrates
- For CO2 fixation
Does bacteria need oxygen for growth?
- Obligate aerobes require oxygen
- Facultative anaerobes only use oxygen if it is present
- Obligate anaerobes do not require oxygen
- Microaerophilic require very little oxygen
What is the basic difference between Gram positive and Gram negative bacteria?
- Gram positive bacteria have a wall structure on the outside of the cell with the membrane on the inside
- Gram negative bacteria have a wall structure sandwiched between two membranes
What are the three main functions of the cell envelope?
- For defence
- For strength
- For biofilms
What colour is the Gram stain on Gram positive and negative bacteria?
- Gram positive is stained purple
- Gram negative is stained pink
What are the bacterial shapes as seen by microscopy?
- Shape: rods, cocci
- Arrangement: chains, single, groups
The bacterial cell wall is made out of peptidoglycan. What is the function of peptidoglycan?
- It stabilises the cytoplasmic membrane, enabling it to withstand high internal osmotic pressures
What is a bacteria capsule?
A polysaccharide layer outside of the cell. Its function is to allow adherence to host tissues, form biofilm, immune evasion, helps with antimicrobial resistance.
What are the three common bacterial cell surface structures?
- Fimbriae
- Pili
- Flagella
What is the function of fimbriae?
Cell adhesion
What is the function of pili?
- Genetic exchange
- Adhesion
What is the function of flagella?
- Motility
What does infectivity mean?
- The ability to produce disease in a host organism
What does pathogenicity mean?
- The ability to produce disease in a host organism
What is an opportunistic pathogen?
A microbe that typically infects a host that is immunocompromised in some way, either by a weakened immune system or breach to the body’s natural defences, such as a wound
What is virulence?
The measurement of pathogenicity is called virulence, with highly virulent pathogens being most likely to cause disease in a host
What does the host-pathogen interaction describe?
How pathogens sustain themselves and cause disease within hosts or host populations.
What are the 3 levels of thinking for host-pathogen interactions
- Population level
- Individual level
- Cellular and molecular level
What are the outcomes after pathogen exposure?
- Clearance
or - Colonisation
- disease
or - no disease
- disease
What are the key variables that influence the outcome of exposure to a pathogen?
- The ability of the pathogen to colonise and cause host damage
- Immune status of the host
- Constant variables and dynamic relationship
- Exposure to a pathogen does not ensure that disease will occur, since a host might be able to fight off the infection before disease signs/symptoms develop
What is commensal bacteria and what are the benefits?
Bacteria that resides on the surface of the body or mucosa without causing harm, e.g. gut microbacteria.
Benefits:
- Protection against pathogens
- Production of nutrient
What are the host-pathogen interactions when the commensals turn bad?
Host commensal causes infection which then causes symptomatic disease.
Opportunism is common among bacterial pathogens. What do we know about staphylococcus epidermidis?
- Usually non-pathogenic
- Can enter body, e.g. during surgery
- Usually rapidly killed by defences of the innate immune system
- But can colonise immunologically compromised sites, e.g. the plastic surface of a heart valve.
What are some common bacterial pathogens in human and veterinary medicine?
- Shigella
- Campylobacter
- Helicobacter
- Salmonella
- Escherichia
- Staphylococcus
- Streptococcus
What do we know about shigella, campylobacter, helicobacter, salmonella, escherichia
- Gram Negative
- Can be zoonotic
- Diarrhoeal diseases
What do we know about staphylococcus and streptococcus?
- Gram positive
- Can be zoonotic
- Skin and throat infections
- E.g. mastitis in dairy cattle
What are some key abilities of bacterial pathogens?
- Transmit between hosts
- Colonise hosts
- Cause host damage
How can pathogens gain access to new hosts (disease transmission)?
- Direct contact
- Skin-skin e.g. staphylococcus aureus infections
- Sexual intercourse - neisseria gonorrhoea
- Indirect contact
- Aerosol e.g. mycobacterium tuberculosis
- Inanimate objects e.g. water, food, blood, fomites (e.g. toys) e.g. salmonella enterica, vibrio cholerae
- Vectors e.g. ticks, fleas, e.g. borellia burgdorferi
How is bacteria recognised by the host innate immune system?
- Cell-to-cell interaction
- Pathogen-associated molecular patterns (PAMPs)
How does the CLR in the host innate immune recognise bacteria?
- Transmembrane proteins localised at the plasma membrane
- Recognise glycans from the wall of some bacteria
- Activate kinase sky and CARD9/MALT1/Bcl-10 adapter complex
How does the NLR in the host innate immune recognise bacteria?
- Cytoplasmic sensors
- Multiple subfamilies
NLPs recognise bacterial, viral, parasitic and fungal PAMPs
AIM2 detects viral and bacterial DNA - Form multiprotein signalling complexes known as inflammasomes
- Activates caspase-1-mediated processing and activation of pro-interleukins IL-1ß and IL-18
NOD1 and NOD2 recognise bacterial peptidoglycan
How does the TLR in the host innate immune recognise bacteria?
- Transmembrane proteins localised either at the plasma membrane or in endosomes
- Broad range of specificities recognising proteins, nucleic acids, glycans etc
- Activate MAP kinase, NFxB and IRF pathways
Example:
TLR4 recognises lipopolysaccharide (LPS), a component of the gram-bacteria cell wall
How does the RLR in the host innate immune recognise bacteria?
- Cytoplasmic sensors of viral RNA
- Signal via the mitochondrial adaptor protein MAVS
- Trigger antiviral responses including the production of type I interferon
Examples: RIG-I and MDAS
What are the routes of entry for bacteria?
- Sites of vulnerability:
- Respiratory tract
- Intestinal tract
- Urogenital tract
- Conjunctive
What are the physical removal strategies?
- Coughing and sneezing
- Vomiting and diarrhoea
- Urination
- Tear production