Transcription and Translation Flashcards

1
Q

What is gene expression?

A

Gene expression refers to the process by which genetic information stored in the DNA is converted into functional products, such as proteins or non-coding RNA molecules, that carry out various cellular functions.

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2
Q

What is the mechanism of gene expression?

A

Gene expression is the process by which DNA is used to make proteins, which then go on to perform various important functions in the body.

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3
Q

What are examples of proteins?

A

The protein could be an enzyme, hormone or receptor.

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4
Q

What is the process of gene expression?

A

Transcription, processing, non coding RNA maturation, RNA export, translation and protein folding.

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5
Q

What is transcription?

A

Transcription is the process by which a segment of DNA is used to generate an RNA template.

The DNA segment is “read” by an enzyme called RNA polymerase, which produces a strand of RNA that is complimentary to the DNA.

In this complementary RNA strand, all thymine bases are replaced by uracil.

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6
Q

What is processing?

A

This primary RNA transcript is then modified to convert it into mature messenger RNA (mRNA) that can be used in translation.

The mRNA undergoes splicing to remove the non-coding parts of the transcript (introns) so that only the coding sections (exons) remain.

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7
Q

What is Non-coding RNA maturation?

A

Non-coding regions of RNA (ncRNA) are transcribed as precursors which are then processed further.
For example, these regions may be transcribed as pre-ribosomal RNA (pre-rRNA) which then undergoes cleavage to become ribosomal RNA (rRNA).

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8
Q

What is RNA export?

A

The majority of mature RNA is then transported from the nucleus to the cytoplasm.

Although some RNAs function in the nucleus, most are carried through pores in the nucleus into the cytosol, including all RNAs involved in protein synthesis.

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9
Q

What is translation?

A

The final mRNA carries the information needed to code for proteins. Every three base pairs on the mRNA corresponds to a binding site for a transfer RNA (tRNA) which carries an amino acid.

The amino acids are then linked together in a chain by a ribosome to create a rudimentary protein chain.

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10
Q

What is protein folding’?

A

The long chain of amino acids folds to form a three-dimensional structures using enzymes called chaperones.

This three-dimensional structure is the final, functional form of the protein. (mentioned more in other slides)

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11
Q

What are the main DNA control elements?

A

Promoters and terminators as they are critical components of gene expression in living organisms.

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12
Q

What is their key role?

A

In regulating the transcription of DNA into RNA, which in turn determines the synthesis of proteins and other functional molecules.

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13
Q

What are promoters?

A

Promoters are DNA sequences located upstream of the transcription start site of a gene.
They serve as binding sites for proteins called transcription factors, which recruit RNA polymerase, the enzyme responsible for synthesizing RNA, to the correct position on the DNA.

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14
Q

What helps determine where RNA polymerase begins transcription?

A

Promoters contain specific DNA motifs, such as the TATA box and the transcriptional start site (TSS) that helps determine this.

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15
Q

What happens after this?

A

Transcription factors recognize these motifs and bind to the promoter, facilitating the assembly of the transcription initiation complex, which includes RNA polymerase and other proteins.

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16
Q

When the transcription initiation is formed what happens?

A

RNA polymerase begins synthesizing RNA in the 5’ to 3’ direction, using the DNA template strand as a template.

17
Q

What are terminators?

A

Terminators are DNA sequences located downstream of the coding region of a gene.

They signal the termination of transcription, leading to the release of RNA polymerase and the completion of RNA synthesis.

18
Q

What are the two types of terminators?

A

intrinsic terminators and rho-dependent terminators.

19
Q

What is an intrinsic terminator?

A

Intrinsic terminators are self-contained sequences that form a hairpin loop structure in the RNA transcript, followed by a string of uracil nucleotides.

This hairpin loop structure destabilizes the interaction between the RNA polymerase and the DNA template, causing RNA polymerase to pause and eventually dissociate from the DNA.

20
Q

What is a Rho-dependent terminator?

A

This is where they require a protein called Rho factor to terminate transcription.

Rho factor binds to the RNA transcript and moves along it until it encounters the RNA polymerase, which then dissociates from the DNA, terminating transcription.

21
Q

Together how do these work?

A

Promoters and terminators work in tandem to precisely regulate the initiation and termination of transcription, allowing cells to tightly control gene expression in response to various cues and environmental conditions.

22
Q

in prokaryotes how does gene expression work?

A

Gene expression is often regulated by the availability of specific transcription factors or other regulatory proteins that can bind to the promoter or terminator regions, influencing the binding of RNA polymerase and the formation of the transcription initiation complex or terminator hairpin loop structure.

23
Q

What is the lactose operon?

A

It is a system of genes and regulatory elements that work together to control the metabolism of lactose, a sugar found in milk.

24
Q

What it is it an example of?

A

Classic example of gene regulation in bacteria, specifically in the bacterium Escherichia coli (E. coli).

25
Q

What three components does the lactose operon consist of?

A

Structural genes, Promoter and operator.

26
Q

What are the three structural genes?

A

lacZ, lacY and lacA.

27
Q

What is lacZ?

A

This gene codes for β-galactosidase, an enzyme that breaks down lactose into glucose and galactose.

28
Q

What is lacY?

A

This gene codes for lactose permease, a membrane protein that facilitates the uptake of lactose into the bacterial cell.

29
Q

What is lacA?

A

This gene codes for transacetylase, an enzyme with a less well-defined role in lactose metabolism.

30
Q

Promotor

A

(Discussed as above)

31
Q

Operator

A

The operator is a DNA sequence that is located between the promoter and the structural genes. It serves as a binding site for a regulatory protein called the lac repressor.

32
Q

How is the lactose operon regulated?

A

By a protein called the lac repressor

33
Q

In summary?

A

the lactose operon is a genetic regulatory system in bacteria that controls the expression of genes involved in lactose metabolism.

It is regulated by the presence or absence of lactose and its derivative, allolactose, through the binding of the lac repressor to the operator.