Topic 9a: test to treatment decision Flashcards

1
Q

what are some indications or hints that there is a genetic component to a cancer?

A

familial cancer and young age of onset

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2
Q

what is SCCOHT?

A

Small cell carcinoma of ovary, hypercalsemic type

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3
Q

what is the age of diagnosis of SCCOHT?

A

23.9 yrs old

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4
Q

what is knudson’s 2-hit model in carcinogenisis?

A

where cancers require the knockdown or mutation in the two alleles of the genes in order to actually get to cancer (and a person that is born or acquires the “1st” hit early on has more chance to acquire the 2nd hit)

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5
Q

what cancer is the SMARCA4 gene associated with?

A

SCCOHT

Small cell carcinoma of ovary, hypercalsemic type

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6
Q

what is the most common type of kidney cancer?

A

renal cell carcinoma (RCC)

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7
Q

what is special about RCC (renal cell carcinoma)?

why woudl we want to study it?

A

resistant to conventional chemotherapy, diverse set of outcomes with patients with same tumour type

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8
Q

what is the germline susceptibility to RCC?

A

5-8% syndromic (i.e inhertited mutations) the rest is sporadic

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9
Q

what was the most common mutated genes in ccRCC and non-ccRCC?

cc = clear cell

in japaneuse and european populations

A

in japanese populations: TP53 in ccRCC and BAP1/FH in non-ccRCC
in european: CHECK2 folllowed by MITF and ATM

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10
Q

in a canadian cohort, what was found to be the most commonly mutated genes in RCC?

A

CHECK2 deletion variant and MITF mutation

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11
Q

what are some specific genetic signatures seen in ccRCC, pRCC, chRCC, tRCC, ccpRCC?

A
  • ccRCC: SNV in VHL
  • pRCC: CNV gain in ch. 17+7
  • chRCC: SNV in TP53
  • tRCC: fusion
  • ccpRCC: VHL methylation
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12
Q
A
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13
Q

what are some truncal vs branch mutations in RCC?

A

truncal: VHL
branch: SMARCA4, PTEN

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14
Q

can VHL be used as a prognostic marker?

A

no because it is present in all tumors independently of severity

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15
Q

Risk of disease recurrence increases with number of what?

A

number of mutated RCC genes (e.g. VHL + 0 has better disease-free survival than VHL +1, +2, +3, …)

this was also independent of age

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16
Q

how can classification of high risk (eligible for ajuvant therapy) vs low risk for RCC be improved?

A

is currently done by looking at histological gradig system, but when look at number of mutations alongside VHL, we can divide them into VHL+0 & VHL+1, who may not need ajuvant therapy, and VHL+2, VHL+>3 which are pripoitized for ajuvant therapy.

17
Q

what type of mutations are the additional mutations measured in VHL+0,1,2,3 tumors?

A

driver mutations because it is indepndent from tumor mutational burden

18
Q

how doess VHL work and what happens when there is a loss of function?

A

normal: when in normoxia, VHL will bind hydroxylated HIF-a, leading to its degradation, but when in hypoxia, HIF-a will not be hydroxylated so it will bind HIF-b, leading to formation of dimer TF and transcription of many genes leading to cell proliferation, metabolic shift toward glycolysis and angiogenesis

inactivation: in normoxia, the HIF-a will still be hydroxylated but since there not VHL, they will not be degraded, meaning that it will be able to bind to HIF-b, leading to tranxcription of those same genes, elading to more angiogenesis specifically which is important for tumor growth.

19
Q

what was a target for RCC tumors that people tried to do as a targeted therapy?

A

VEGF inhibition which leads to angiogenesis that is being overexpressed because of lack of VHL

but only works for ccRCC because not present in others

20
Q

what is common to both MSS (stable) vs MSI (instable) colorectal cancer genetic evolution?

A

the loss of genes in the Ras/bRaf signaling axis

21
Q

what are some availbel targeted therpaies against the ras/raf pathway (what are the different targets)? which ones would actually work?

A
  • EGFR-specific antibodies
  • EGFR tyrosine kinase inhibitors
  • braf inhibitors
  • mek inhibitors

only the bottom two would work since the ras/raf are activatig mutations so would not make sense to target upsteam of them

wnat to inhibit before it gets to the nucleus

22
Q

why is it that we saw lots of resistance to cetuximab in colorectal cancers?

A

because upstream of general driver mutations, so doesn’t actually prevent oevractivation

this drug prevents activation of EGFR from the outside of the cell

22
Q

what is a liquid biopsy?

A

analysis of a liquid form the body and testing it for the presence of tumor DNA

blood, urine, breastmilk

23
Q

what are advantages of a liquid biopsy vs tumor biopsy?

A
  • non-invasive as compared to tissue
  • easily accessible where it is not possible for sme tumors, especially metastatic lesions
  • smaple volume is not limited (tumor biopsies often small)
  • can be repeated to monitor course of disease
  • capture genetic heterogeneity of tumors
24
Q

what are advantages of analyzing ctDNA in liquid biopsies as compared to other measures of cancer?

A
  • enables direct measurment of tumors through tumor-specific mutations
  • can be detected in early stages of cancer
25
Q

in ccRCC, how does the classification of VHL+>2 (high risk) vs VHL+<2 (low risk) affect therapy or testing?

A

high risk: more frequent follow-up imaging/biopsies, and early introduction to adjuvant therapu
low risk: redice unnecessary tests/ disease-associated travels/ anxiety related to medical visits