Topic 8 Flashcards
what are gene mutations?
- an alteration of a base in the sequence of bases for one gene.
- Likley to occur during DNA replication, which is in interphase of cell cycle
- occur spontaneously but frequency of them occurring can be increased by mutagenic agents
- can result in different amino acid sequence in the encoded polypeptide, as they alter the gene
- if amino acid sequence changes when protein modified into tertiary structure, it will form hydrogen and ionic bonds in different places and fold differently, resulting in a different 3d shape and so a non functioning protein e.g. active site changes shape so no longer works as enzyme
- alterations to genes can result in a mutation that causes cancer
What are mutagenic agents?
- high energy and ionising radiation include alpha and beta particles and x ray, gamma rays and ultraviolet light (UV)
- Carcinogens are chemicals that can alter the structure of DNA and interfere with transcription. Include chemicals in tobacco smoke, mustard gas and peroxides.
What are addition mutations?
one or more extra bases added to the base sequence
* causes a frame shift (all subsequent codons altered) to the right
* mutation can be harmful as all altered codons may code for a different amino acid and result in a different amino acid sequence resulting in a non functioning protein
What is a deletion mutation?
one or more bases are removed from the base sequence
* causes a frame shift to the left which may result in a different polypeptide chain and a non functioning protein
What are substitution mutations?
one or more bases are swapped for another
What are inversion mutations?
A sequence of bases is reversed e.g. ATGCCT becomes ATCCGT (GCC reversed to CCG)
What is a duplication mutation?
one or more base sequences are repeated e.g. ATGCCT becomes ATGCCCCT (CC repeated)
What is a Translocation Mutation?
a sequence of bases is moved from one location in the genome to another. This could be movement within the same chromosome or movement to a different chromosome.
What effect do Mutations have?
- order of DNA bases in a gene determines the amino acid sequence of a particular polypeptide
- if mutation occurs in a gene, the sequence of amino acids in the polypeptide that it codes for could be changed.
- polypeptides make up proteins and a change in amino acid sequence of polypeptide may change the tertiary structure of the protein, resulting in a non functioning protein e.g. mutation in a polypeptide that makes up an enzyme may change the shape of an enzyme’s active site. This may stop substrates from being able to bind to active site, meaning enzyme cannot catalyse reaction as it is denatured.
- some mutations can increase likelihood of developing certain acncers
- some mutations can cause genetic disorders (inherited disorders caused by abnormal genes/chromosomes e.g. cystic fibrosis)
- if a gamete containing a mutation for a type of cancer/genetic disorder fertilised, mutation will be present in new fetus formed- hereditary mutations as passed to offspring.
Why do not all types of mutation always result in a change to the encoded amino acid sequence of the polypeptide?
- not all mutations affect the order of amino acids in a protein, as some mutations change only one triplet code
- genetic code is degenerate so some amino acids are coded for by more than one DNA triplet e.g. tyrosine can be coded for by TAT or TAC in DNA)
- some substitutions will still code for the same amino acid, as DNA triplet may still code for same amino acid even after substitution
- sometimes inversion mutations do not cause a change in the amino acid sequence, as DNA triplet may still code for same amino acid even after base sequence inverted.
What are Frameshifts?
- Some gene mutations change the nature of all base triplets downstream from the
mutation, ie result in a frameshift - addition, duplication and deletion mutations almost always change amino acid sequence of a polypeptide because they change the number of bases in the DNA code
- causes a frameshift in the base triplets that follow, so the triplet code is read in a different way.
What are Mutagenic Agents?
- mutations occur spontaneously e.g. when DNA is misread during replication
- BUT mutagenic agents can increase the rate of mutations e.g. ultraviolet radiation, ionising radiation, some chemicals and viruses increase rate of mutations in many ways.
1. Acting as a base- base analogs (chemicals) can substitute for a base during DNA replication, changing the base sequence in the new DNA
2. Altering bases- some chemicals can delete or alter bases e.g. Alkylating agents can add an alkyl group to guanine, which changes the structure so it pairs with thymine, instead of cytosine
3. changing the structure of DNA- some types of radiation can change the structure of DNA, which causes problems during DNA replication e.g. UV radiation can cause adjacent thymine bases to pair up together.
What are Stem cells?
- undifferentiated cells that can continually divide and become specialised. Differentiation is the process by which stem cells become specialised
- multicelluar organisms have a diverse range of specialised cells that all originate as undifferentiated stem cells.
What are Totipotent Stem cells?
- stem cells that can divide and produce any type of body cell in an organism (including cells that make up placenta in mammals)
- during development, totipotent stem cells translate only part of their DNA, resulting in cell specialisation
- only present in mammals in first few cell divisions of an embryo, and after this point become pluripotent.
What are Pluripotent stem cells?
- found in embryos and can differentiate into almost any cell in body (all except cells that make up placenta)
- used in research with the prospect of using them to treat human disorders. These cells could be used to regrow damaged cells in humans, such as replace burnt skin cells. These treatments are potential as there are issues.
- this can cause issues as sometimes the treatment does not work or the stem cells continually divide to create tumours
- there is an debate on whether it is ethical to make therapeutic clones of people to make an embryo to get the stem cells to cure a disease and then destroy the embryo.
What are Multipotent Stem cells?
- present in adult mammals
- able to differentiate into a limited number of different cell types
- e.g. both red and white blood cells can be formed from multipotent stem cells found in bone marrow
What are Unipotent stem cells?
- present in adult mammals
- can only differentiate into one type of cell
- e.g. a type of unipotent stem cell that can only divide to produce epidermal skin cells, which make up outer layer of skin
How do Stem cells become specialised?
- stem cells become specialised because during their development they only transcribe and translate part of their DNA. stem cells all contain same genes but during development not all of them get trasncribed and translated (expressed)
- under one set of conditions, certain genes are expressed and others are switched off. Under different conditions different genes are expressed and others are switched off
- expressed genes get transcribed into mRNA, which is then translated into proteins. These proteins modify the cell (determine cell structure and control cell processes, including the expression of more genes, which produces more proteins
- changes to the cell produced by these proteins cause the cell to become specialised. Changes are diffcult to reverse, so once a cell has specialised, it stays specialised.
- summary: genes expressed, mRNA transcribed and translated into proteins, proteins modify cell, cell becomes specialised
- genes switched off, mRNA not transcribed or translated, proteins not produced.
What are Cardiomyocytes and how are they formed?
- cardiomyocytes are heart muscle cells that make up much of heart tissue
- In mature mammals, it’s though they cannot divide to replicate themselves, so for ages people thought it wasn’t possible to regenerate an individual’s own heart cells at all, which is a problem if the heart becomes damaged e.g. by heart attack or the cells became worn out through age
- recent research suggests heart has some regenerative capability. Some scientists believe old/damaged cardiomyocytes can be replaced by new cardiomyocytes derived from a small supply of unipotent stem cells in heart
- some researchers believe this process may be constantly occurring, but haven’t agreed how fast. Some believe it’s a very slow process and some cardiomyocytes are never replaced throughout a person’s lifetime. Others believe it occurs faster, so every cardiomyocyte in heart replaced several times in a lifetime.
How are stem cells used in bone marrow transplants?
- bone marrow contains stem cells that can become specialised to form any type of blood cell
- bone marrow transplants can be used to replace faulty bone marrow in patients that produce abnormal blood cells
- the stem cells in transplanted bone marrow divide and specialise to produce healthy blood cells
- technique has been used successfully to treat leukaemia and lymphoma and has also been used to treat some genetic disorders, such as sickle cell anaemia and severe combined immunodeficiency (SCID)
What stem cell therapies could be in place to treat many conditions in the future?
- spinal cord injuries: stem cells could be used to replace damaged nerve tissue
- heart disease and damage caused by heart attack: stem cells could be used to replace damaged heart tissue
- organ transplants: organs could be grown from stem cells to provide new organs for people on the donor waiting lists.
What are the 3 main potential sources of stem cells?
- adult stem cells- obtained from body tissues of adult in an operation with little risk involved but a lot of discomfort. They are multipotent, so can only differentiate into a limited number of cell types, not all body cell types (like embryonic)
- embryonic stem cells- obtained from embryos that are created in a laboratory using in vitro fertilisation (IVF)- egg cells are fertilised by sperm outside the womb. Once embryos are 4-5 days old, stem cells removed and rest of embryo destroyed. Embryonic stem cells can divide an unlimited number of times and develop into all types of body cells (pluripotent)
- Induced pluripotent stem cells (iPS cells)
How are Induced Pluripotent Stem Cells (iPS) produced from adult somatic cells using appropriate transcription factors?
usied to treat human disorders and used to overcome some of the ethical issues with using embryonic stem cells
- adult somatic unipotent cells are altered in a lab to return them to a state of pluripotency
- to do so, genes that were switched off to make the cell specialised must be switched back on, which is done using transcription factors
- adult cells made to express a series of transcription factors that are normally associated with pluripotent stem cells. Transcription factors cause adult body cells to express genes that are associated with pluripotency
- transcription factors can be introduced to adult cells by infecting them with specially modified virus, with genes coding for the transcription factors in its DNA. When virus infects adult cell, these genes passed into adult cell’s DNA, so cell able to produce the transcription factors
- iPS cells could become useful in research and medicine in the future, but more research into how similar they are to true pluripotent emryonic stem cells needed before they can be properly used.
What are the ethical considerations surrounding obtaining stem cells from embryos created by in vitro fertilisation (IVF)?
- raises ethical issues as the procedure destroys the embryo, which could become a fetus if placed in the womb
- some people believe an individual is formed at the moment of fertilisation and so has the right to life, so believe it is wrong to destroy embyos
- some have fewer objections to stem cells being obtained from eggs cells that have not been fertlised by sperm, but have been artificially activated to start dividing. This is because the cells cannot survive more than a few days and would not produce a fetus if placed in a womb
- some people believe scientists should only use adult stem cells as no embryos are destroyed in their production. BUT adult stem cells cannot develop into all specialised cell types but embryonic stem cells can
- iPS cells can differentiate into any cell type BUT are obtained from adult tissue so have less ethical issues than obtaining stem cells from embyos
- possible that iPS cells could be made from own patient cells. They would be genetically identical to patient cells and could be used to create new tissue or an organ that wont be rejected by patient body