Topic 6 - Disease and Forensics Flashcards
What is the name of the glycoprotein on HIV?
gp120
What does gp120 bind to?
A cd4 receptor on a T helper cells(lymphocytes)
Why is unbroken skin a barrier to HIV?
Keratin in skin surface forms a hard, impenetrable, physical barrier.
What is an enzyme’s structure?
An enzyme is a globular protein.
It has an active site and charged R groups on outside of molecules - specifically hydrophilic on the outside.
How could HIV drugs work?
- HIV drugs would prevent viral replication so T helper cells will not be burst by virus particles leaving the cell.
- Inhibition of reverse transcriptase so DNA could not be made from viral RNA.
- Inhibition of integrase by drugs so viral DNA cannot integrate into host DNA.
HIV genetic material?
RNA
Linear nucleic acid
No plasmids
Mycobacterium tuberculosis genetic material?
DNA
Circular nucleic acid
Plasmids
How do macrophages act as APCs?
Macrophages present antigens to T helper cells. The macrophage binds to T helper cell by CD4 receptors on T cell and by MHC (major histocompatibility complex) on macrophages.
T helper lymphocyte decrease: the effect on other blood components? (In HIV)
B cells are not activated meaning fewer antibodies. T killer cells increase.
Change in CD4 T-lymphocytes during HIV and decrease after HIV infection.
Gp120 in virus binds with CD4 receptors in surface membrane of lymphocyte. Viral RNA enters the lymphocyte and is used to produce viral DNA by action of reverse transcriptase to form new viruses. Lymphocyte is destroyed when new viruses bud out of cell.
Changes in number of CD4 T-lymphocytes during first six weeks after infection with HIV.
Numbers decrease.
Small decrease in first week and between 4-6 weeks.
Large decrease between weeks 2 to 3.
Credit use of manipulated figures.
TB vs. Hosts in an evolutionary race
Affecting APC affecting T cell helper cells
Mutation has occurred in the DNA
There is a change in antigen of bacteria. Memory T cells will not recognise the new antigen. Another primary immune response is needed. E.g. New antigen needs to be presented to the T helper cells to activate another population of T helper cells. Phagocytes/ macrophages unable to recognise, engulf, and destroy bacteria. Antigen presentation is not possible.
Why antibody B not present after infection?
If antibodies will only be present if antigen is present, antigen H is not present in vaccine. Vaccination failed to stimulate immune response.
Organism in a pond
Surrounded by fast-growing trees
Allele frequency
Mutant allele increases, normal decreases
Reproductive success of mutant/non-photosynthetic individuals.
As trees develop, pond will be more shaded. Less light means less photosynthesis is possible. Photosynthetic individuals die and non-photosynthetic survive to pass on allele by using organic compounds - more in nutrients in pond.
Phagocytosis and lysozyme in APCs(macrophages)
Bacteria have to be taken into macrophages.
Fusion of phagosome with lysosome.
Phagosome are broken down by enzymes. (E.g protease - not lysozyme as mentioned in stem of question)
Part of the pathogen has to be on membrane of macrophage.
Type of immunity that results in production of antibody after infection?
Natural active immunity
Secondary immune response
On infection - second exposure - memory cells are activated, cloned, and stimulated. B me merit cells differentiate into plasma cells. In secondary response, antibodies are released from plasma cells.
Antibody A after vaccination vs. After infection
Levels of antibody rise sooner, faster and higher, after infection
The name of the enzyme used in the process to amplify DNA sample
Polymerase
The process that could be used to separate DNA fragments to create DNA profiles
Electrophoresis
Which suspect based on DNA profiles?
Suspect which matches all of the trends I’m the sample.
DNA profiling assumes every individual’s DNA is unique apart from identical twins.
DNA profiling analyses the introns (non-coding blocks) (short tandem repeats)
Non-coding DNA is hypervariable large
Larger number of introns
Many combinations at each locus.
DNA profiling evidence not absolutely conclusive.
DNA profiling has several different stages
Contamination can arise at any stage
Only a few sequences ( a small portion) of DNA is analysed. Possibility of two identical profiles from unrelated individuals. Identical twins or closely related individuals may also show same profile.
Suggest how DNA profiling could be useful to scientist who examine fossils of animals and plants.
Comparisons can be made between DNA from fossils and other organisms to find genetic relationships (how closely related) and therefore can be used opinion taxonomy/classification. These comparisons can also be used to understand evolutionary lines and to determining common ancestor.
Comment on reliability of data. No indication of no. Rats used No data pints No error bars in graph No indication of variability No statistical evidence No indication of experimental details, control variables. Or control group. Mean
A comment cannot be made
Caution should be taken in interpreting results.
Mean has been used so there must have been some repeats
DNA profiling
Source of DNA sample ,e.g. blood, saliva, semen
Multiple copies of DNA made using PCR (polymerase chain reaction).
Step 1:90’C
Step 2:50’C
Step 3:70’C
Use of primers, DNA polymerase, nucleotides, and many repetitions.
Restriction enzymes are used to produce DNA fragments for gel electrophoresis.
The DNA is loaded onto the gel ( agarose sugar). An electric current is applied.
Use of dye/ fluorescent tag/ UV light or use of radioactive markers and X-Ray film.
Comparisons of DNA profiles: compare total number of bands, position of bands, and size/width of bands.
Comparisons of DNA profiles
Compare total number of bands, position of bands, and size/width of bands.
Sharing Scientific Research
Scientific/peer-reviewed journals
Scientific conferences
Media reports e.g TC, radio, newspaper, Internet
Template stand of DNA
AAC TAG TTG GCA AGT GT GGT CAC
Could this be used in translation?
Could strand mRNA be synthesised from this?
Codes for 7 amino acid in protein synthesis?
AAC TAG TTG GCA AGT GT GGT CAC
Could this be used in translation? NO
Could strand mRNA be synthesised from this? YES
Codes for 7 amino acid in protein synthesis? YES
Where would the polypeptide chain of this enzyme be synthesised?
At the ribosome in the rough endoplasmic reticulum.
A ribosome/polysome consists of rRNA, protein component, and 1 large and 1 small subunit ( 2 subunits total).
RER: a ribosome attached to the membrane.
Gene mutation?
Change in DNA.
Change of bases/nucleotides.
This change could be a deletion, addition, duplication or substitution.
HIV infect B lymphocytes. True or false.
False. T (helper) lymphocytes - not B lymphocytes.
Do viruses have a cytoplasm?
No. Bacteria have a cytoplasm, but viruses do not.
Are protein capsids in bacteria?
No. Protein capsids are in viruses only.
B + T cells are formed in the…?
Bone marrow
B cells stimulate T cells to produce clones of memory cells. True or false.
False. T cells stimulate B cells to produce antibodies.
T helper cells so not produce chemicals that destroy pathogens. True or false.
True. T killer cells produce chemicals that destroy pathogens.
How do B + T cells produce clones.
Clones are produced via mitosis..
Why may you not see bacteria under a microscope?
Too small : limitation due to magnification or resolution.
Bacteria not stained.
Bacteria already destroyed.
Bacteria are not present in the blood e.g. Only a small sample shown.
How do lymphocyte numbers change during antibiotic treatment?
Fewer lymphocytes: no longer needed as antibiotics kill bacteria.
More lymphocytes: due to clinal expansion of lymphocytes as the antibiotics have not killed all the bacteria yet.
Placebo antibiotic effect on bacteria and lymphocyte numbers?
Placebo antibiotic has no effect therefore there will be more bacteria and lymphocytes due to clonal expansion.
Eukaryotic exclusive features?
A chloroplast and a nucleus are exclusive to eukaryotes (membrane-bound subunits and organelles)
A cell wall and a cytoplasm - eukaryotic or prokaryotic.
Both. A cell wall and a cytoplasm - eukaryotic AND prokaryotic.
DNA bases
Adenine
Cytosine
Guanine
Thymine
RNA bases
Adenine
Cytosine
Guanine
Uracil
Adenine or adenosine?
Adenine is the base in nucleic acid.
Adenosine is in ATP: adenosine triphosphate
Explain ‘triplet code’
Each amino acid is coded for by three bases.
AAT AAC CAG CAG TTT
gives four amino acids
Explain ‘Non - overlapping’ code
Each triplet is discrete
Distinct triplet codes
AAT AAC CAG CAG TTT
Explain ‘degenerate code’
More than one code can be used for a particular amino acid or stop code. Eg. Both AAT and AAC code for leucine.
A mononucelotide consists of…
A phosphate group, deoxyribose, and a base.
Translation of the mRNA of this DNA section to polypeptide molecule.
AAT AAC CAG TTT
UUA UUG GUC AAA is the sequence of the mRNA.
A ribosome is involved and is the site of translation.
Each tRNA molecule is attached to one specific amino acid.
Anticodon on tRNA binds to codon on mRNA (e.g. AAU anticodon to UUA codon.)
Hydrogen bonding between mRNA/tRNA bases.
Peptide bonds form between amino acids.
Suggest why common cold virus cannot infect cells via blood via cut.
Viruses only infect specific cells and only attach to specific receptors on host cells.
Receptors not present on blood/endothelial cells.
There is also the destruction of viruses by phagocytes.