Topic 4.1 - The Genetic Code and Protein Synthesis Flashcards
Includes DNA, genes and chromosomes, and transcription and translation.
What is the basic function of DNA?
Used to store genetic information
(all instructions organism needs to grow and develop from fertilised egg to adult)
What is the main function of RNA?
Transfer genetic information from DNA to ribosomes
What do ribosomes do?
Read RNA to make polypeptides in process called translation
What are ribosomes made from?
RNA and proteins
What 3 things does a nucleotide consist of?
- Nitrogen-containing organic base
- Pentose sugar
- Phosphate group

What are monomers that make up DNA & RNA?
Nucleotides
How are polynucleotides formed?
- Nucleotides join via condensation reaction between phosphate group of one nucleotide and sugar of another
- This forms a phosphodiester bond

What is a chain of sugar and phosphates called?
Sugar-phosphate backbone
What is the pentose sugar in a DNA nucleotide?
Deoxyribose
Each DNA nucleotide has same sugar & phosphate group but a different…
nitrogen base

Name the 4 possible bases in a DNA nucleotide
- Adenine (A)
- Thymine (T)
- Cytosine (C)
- Guanine (G)
What is the pentose sugar in a RNA nucleotide?
Ribose
Name the 4 possible bases in a RNA nucleotide
- Adenine (A)
- Uracil (U)
- Cytosine (C)
- Guanine (G)

Describe how the structure of DNA is formed
- 2 DNA polynucleotide strands join together by hydrogen bonding between complementary base pairs
- 2 hydrogen bonds form between A & T, and 3 hydrogen bonds form between C & G
- 2 antiparallel polynucleotide strands twist to form DNA double-helix

What does adenine pair with?
Thymine (A - T)
What does cytosine pair with?
guanine (C - G)
There is always _____ amounts of A & T in DNA molecule and C & G
EQUAL
Describe the structure of RNA
Made from single polynucleotide chain = much shorter than most DNA polynucleotides
Name 3 Types of RNA in every cell
- tRNA
- rRNA
- mRNA
What does rRNA do?
Type of RNA that makes up ribosomes
Explain how the structure of DNA is related to its functions (6)
- Double helix protects bases from corruption
- Large molecule so can store lots of genetic information
- Helix/coiled so compact
- Double stranded so replication can occur semi-conservatively
- (Weak) H-bonds for replication
- Many H-bonds so stable
- Complementary base pairing so accurate identical copies can be made
- Base sequence allows information to be stored
Explain why the replication of DNA is described as semi-conservative (2)
- Each strand copied / acts as a template
- DNA has one new strand & one orginial
Describe stage 1 of semi-conservative replication
DNA helicase breaks H bonds between bases = backbone is unzipped = helix unwinds

Describe stage 2 of semi-conservative replication
Each original single strand acts as template for new strand:
Free nucleotides are attached to their complementary base on the backbone (orginal strand)

Describe stage 3 of semi-conservative replication
- Condensation reactions join nucleotides - catalysed by enzyme DNA polymerase
- H bonds form between bases (on original and new strands)

Describe stage 4 of semi-conservative replication
Each new DNA molecule contains one strand from original DNA molecule and one new strand
(Double strand twists again)

What are the differences between eukaryotic DNA and prokaryotic DNA?
Nuclear eukaryotic DNA is linear & associated with proteins. Whereas prokaryotic DNA is much shorter and circular, and not associated with proteins.
What is the name of the proteins that DNA associates with?
histones
What do histone proteins do?
Help support the DNA
DNA molecules and histone are coiled up very tightly to make _____ ________
compact chromosomes

What is the DNA in mitochondria and chloroplast (in eukaryotes) like?
Similar to prokaryotic DNA because its circular and shorter than DNA in nucleus & it’s not associated with histone proteins
How does prokaryotic DNA fit into cells?
Condenses to fit in cell by supercoiling

What is a gene?
Sequence of DNA bases that codes for either a polypeptide or functional RNA
What do different polypeptides have?
They have different no. and order of amino acids
What determines the order of amino acids in a polypeptide?
The order of bases in a gene
What is each amino acid coded by?
A sequence of 3 bases in gene = called triplet or codon

What is meant by a cell’s genome?
The complete set of genes in the cell
What is meant by a cell’s proteome?
Full range of proteins that the cell is able to produce
Most DNA in eukaryotic cells _____ code for polypeptides
does not
In eukaryotic DNA, genes that code for _______ contain sections that…
In eukaryotic DNA, genes that code for polypeptides contain sections that don’t code for amino acids
What are introns?
Sections of DNA that don’t code for amino acids
Can there be several introns within a gene?
Yes
What are exons?
Bits of gene that do code for amino acids
When are introns are removed?
During transcription
Prokaryotic DNA doesn’t have ____
introns
What are multiple
tandem repeats?
DNA sequences that repeated over and over again
e.g. CCTTCCTTCCTT
Multiple repeats ____ code for amino acids & are called ______ ____
Multiple repeats don’t code for amino acids & are called non-coding repeats
What is meant by the term allele?
Order of bases in each alleles is slightly different ∴ they code for slightly different versions of the same polypeptide (genes with the same locus)
What is homologous pair?
Pair of matching chromosomes: both chromosomes are same size & have same genes (BUT could have different alleles)
Where are alleles coding for the same characteristic found on chromsomes in a homologous pair?
Found at same fixed position (locus) on each chromosome in a homologous pair

Explain why DNA helicase is important in DNA replication (2)
- Breaks H-bonds
- (So) nucleotides can attach/strands can act as templates
Draw 2 nucleotides joining together

When is mRNA made?
During transcription
Describe the structure of mRNA
It’s a single polynucleotide strand (& has groups of 3 adjacent bases)

What does tRNA do?
Carries amino acids that are used to make proteins to ribosomes
(involved in translation)
What does mRNA do?
Carries genetic code from DNA to ribosomes & is then used to make a protein during translation
Describe the structure of tRNA
It’s a single polynucleotide strand that’s folded into clover shape
How does tRNA stay in a clover shape?
H-bonds between specific base pairs hold it in shape
What does every tRNA molecule have? (2x)
- Anticodon at one end - specific sequence of 3 bases
- An amino acid binding site at other end

What is the main thing that happens in transcription?
mRNA copy of gene is made from DNA
In eukaryotic cells, where does transcription takes place?
Nucleus
Describe the stages in transcription
- DNA helicase (in eukaryotes) breaks H-bonds between 2 DNA strands (in beginning of a gene)
- Only one DNA strand acts as a template (to make mRNA copy)
- Free bases in RNA nucleotides are attracted to exposed bases
- Attraction occurs according to complementary base pairing (therefore mRNA strand becomes a complementary copy of DNA template strand)
- RNA nucleotides are joined together by RNA polymerase
- (In eukaryotes) mRNA moves out through nuclear pore

Where does transcription take place in prokaryotes?
Cytoplasm
When does the RNA polymerase stop making mRNA and detachs from DNA in transcription?
When RNA polymerase reaches a particular sequence of DNA called stop signal
Where does translation occur in both eukaryotes and prokaryotes?
At ribosomes in cytoplasm
What is the main thing occuring during translation?
Amino acids are joined together to make polypeptide chain, following the sequence of codons (triplets) carried by mRNA
Describe the stages in translation
- mRNA moves into cytoplasm & attaches to ribosome
- tRNA carry amino acids to it
- Specific tRNA molecule for specific amino acid
- Anitcodon of tRNA binds to complementary codon on mRNA (attaches by specific base pairing)
- Peptide bond forms between amino acids
- tRNA detaches and collects another amino acid
- Ribosome moves along mRNA = forming a long polypeptide chain

What determines how the folded protein structure of protein will be?
Position of R groups in polypeptide chain
What is the genetic code?
Sequence of base triplets (codons) in mRNA which code for specific amino acids
Name 3 qualities of the genetic code
- Non-overlapping
- Degenerate
- Universal
Describe how genetic code is non-overlapping
Each base triplet is read in sequence only once

Describe how genetic code is degenerate
Some amino acids are coded by more than one base triplet
e.g. tyrosine can be coded for by UAU or UAC
Describe how genetic code is universal
Same specific base triplets code for same amino acids in all living things
e.g. UAU codes for tyrosine in all organisms
What are start/stop signals (or codons)?
Triplets that tell the cell when to start/stop production of a protein
What is pre-mRNA?
mRNA strands containing introns and exons
Why does pre-mRNA contain introns and exons?
Introns and exons are both copied into mRNA during transcription
Name and describe the process how pre-mRNA is made into mRNA
Process called splicing occurs: introns are removed and exons join together = forming mRNA strands
What does transcription make in prokaryotes?
mRNA - it’s produced directly from DNA without splicing