Topic 2 Molecular Biology Flashcards
Define “molecular biology”.
2.1
explains living processes in terms of the chemical substances involved
Understanding: Molecular biology explains living processes in terms
of the chemical substances involved.
Explain how urea flasified the theory of vitalism.
2.1
- In 1828, Frederick Woehler heated an inorganic salt (ammonium cyanate) and produced urea
- Urea is a waste product of nitrogen metabolism and is eliminated by the kidneys in mammals
- The artificial synthesis of urea demonstrates that organic molecules could be produced without a “vital force”
Application: Urea as an example of a compound that is produced by
living organisms but can also be artifcially synthesized.
Explain why carbon forms the basis of organic life.
2.1
Due to its ability to form large and complex molecules via covalent bonding
* Carbon atoms can form four covalent bonds
* Forms a wide variety of organic compounds that are chemically stable
Understanding: Carbon atoms can form four bonds allowing a diversity
of compounds to exist.
Define “organic compound”.
2.1
An organic compound is a compound that contains carbon and is found in living things
Understanding: Carbon atoms can form four bonds allowing a diversity
of compounds to exist.
Define “carbohydrates”.
2.1
Composed of carbon, hydrogen and oxygen, with hydrogen and oxygen in the ratio of two hydrogen atoms to one oxygen, hence the name carbohydrate.
Understanding: Life is based on carbon compounds including carbohydrates, lipids, proteins and nucleic acids.
Define “lipids”.
2.1
Broad class of molecules that are insoluble in water, including steroids, waxes, fatty acids and triglycerides.
* In common language, triglycerides are fats if they are solid at room temperature or oils if they are liquid at room temperature.
Understanding: Life is based on carbon compounds including carbohydrates, lipids, proteins and nucleic acids.
Define “proteins”.
2.1
Composed of one or more chains of amino acids.
* All of the amino acids in these chains contain the elements carbon, hydrogen, oxygen and nitrogen, but two of the twenty amino acids also contain sulphur.
Understanding: Life is based on carbon compounds including carbohydrates, lipids, proteins and nucleic acids.
Define “nucleic acids”.
2.1
Chains of subunits called nucleotides, which contain carbon, hydrogen, oxygen, nitrogen and phosphorus.
* There are two types of nucleic acid: ribonucleic acid (RNA) and deoxyribonucleic acid (DNA).
Understanding: Life is based on carbon compounds including carbohydrates, lipids, proteins and nucleic acids.
Define “metabolism”.
2.1
Metabolism is the sum of all reactions that occur in an organism.
* It is the web of all enzyme-catalysed reactions that occur within a cell or organism
Understanding: Metabolism is the web of all the enzyme catalysed reactions in a cell or organism.
Outline anabolism.
2.1
Anabolism: builds molecules by making bonds (i.e. proteins, carbohydrates)
* Includes the formation of macromolecules by condensation reactions
* Water is a product of the reaction
Examples:
* Protein synthesis using ribosomes
* DNA synthesis during replication.
* Photosynthesis, including production o glucose rom carbon dioxide and water.
* Synthesis of complex carbohydrates including starch, cellulose and glycogen.
Understanding: Anabolism is the synthesis of complex molecules from simpler molecules including the formation of macromolecules from monomers by condensation reactions.
Outline catabolism.
2.1
Catabolism: breaks down molecules by breaking bonds (i.e. digestion)
* Includes the hydrolysis of macromolecules into monomers
* Water is a reactant/added to the reaction
Examples:
* Digestion of food in the mouth, stomach and small intestine.
* Cell respiration in which glucose or lipids are oxidized to carbon dioxide and water.
* Digestion of complex carbon compounds in dead organic matter by decomposers.
Understanding: Anabolism is the synthesis of complex molecules from simpler molecules including the formation of macromolecules from monomers by condensation reactions.
Outline a water molecule.
2.2
- covalent bonds between H and O atoms
- Polar covalent bonds
- Polar molecule: O is slightly negative and H is slightly positive (uneven electron distribution)
- Have two poles and are dipoles (show dipolarity)
Understanding: Water molecules are polar and hydrogen bonds form
between them.
Define hydrogen bonding.
2.2
- A hydrogen bond is the intermolecular force that forms when a hydrogen atom in one polar molecule is attracted to a slightly negative atom of another polar covalent molecule.
Understanding: Water molecules are polar and hydrogen bonds form
between them.
Outline the cohesive property of water.
2.2
Cohesion: the binding together of two molecules of the same type, for instance two water molecules.
* Water molecules are cohesive: they cohere, which means they stick to each other, due to hydrogen bonding
Examples:
* Water is transported through xylem vessels at low pressure since H bonding keeps the water molecules together.
* Allows organisms (water strider) to move along the suface of water, creates high surface tension
Understanding: Hydrogen bonding and dipolarity explain the cohesive,
adhesive, thermal and solvent properties of water.
Outline the adhesive property of water.
2.2
**Adhesion: **form between water and other polar molecules, causing water to stick to them.
Examples:
* Water adheres to cellulose molecules in cell walls, allows for water to cling onto plant vessel
* Water is drawn out from plant vessel during evaporation to keep plant moist to absorb CO2 for photosynthesis
Understanding: Hydrogen bonding and dipolarity explain the cohesive,
adhesive, thermal and solvent properties of water.
Outline the thermal propertes of water.
2.2
High specific heat capacity:
* H bonds restrict the motion of water molecules, more energy required to break the bonds to raise the temperatue.
* Importance: Stable temperature for living organisms
High latent heat of vaporization:
* Heat required to evaporate a molecule, more energy is required due to H bonds
* Importance: Energy is taken from environment (endothermic reaction), making surrounding cooled (ex. sweating)
High boiling point:
* Importance: Water is liquid over a broad range of temperatures
Understanding: Hydrogen bonding and dipolarity explain the cohesive,
adhesive, thermal and solvent properties of water.
Contrast hydrophobic and hydrophillic molecules.
2.2
Substances that freely associate and readily dissolve in water are characterised as hydrophilic (‘water loving’)
* Hydrophilic substances include all polar molecules and ions
Substances that do not freely associate or dissolve in water are characterised as hydrophobic (‘water-hating’)
* Hydrophobic substances include large, non-polar molecules (such as fats and oils)
Understanding: Substances can be hydrophilic or hydrophobic.
Compare and contrast methane and water.
2.2
Compare:
* Comparable size and weight
* Comparable valence structures
Contrast:
* Water has a significantly higher melting and boiling point
* Water has a higher specific heat capacity (energy required to raise the temperature of 1 g of substance by 1ºC)
* Water has a higher heat of vaporisation (energy absorbed per gram as it changes from a liquid to a gas / vapour)
* Water as a higher heat of fusion (energy required to be lost to change 1 g of liquid to 1 g of solid at 0ºC)
* All due to H bonds that methane does not have
Application: Comparison of the thermal properties of water with
those of methane.
Outline how water is used as a coolant in sweat.
2.2
- The change of water from liquid to vapour (evaporation) requires an input of energy
- This energy comes from the surface of the skin when it is hot, therefore when the sweat evaporates the skin is cooled
- Because water has a high specific heat capacity, it absorbs a lot of thermal energy before it evaporates
- Thus water functions as a highly effective coolant, making it the principal component of sweat
Application: Use of water as a coolant in sweat.
Outline how glucose, amino acids, cholesterol, fats, oxygen and sodium chloride are transported in blood plasma.
2.2
Water Soluble Substances:
* Sodium chloride (NaCl) is an ionic compound: freely soluble, dissociates in water (NA+ and Cl-)
* Oxygen is non-polar but soluble in water in low amounts due to small size (most oxygen is transported by haemoglobin within red blood cells)
* Glucose is a polar molecule: freely soluble
* Amino acids have both positive and negative charges: solubility degree depends on the R chain
Water Insoluble Substances:
* Lipids (fats and cholesterol) are non-polar and hydrophobic and hence will not dissolve in water
* They form complexes with proteins (lipoproteins) in order to move through the bloodstream
* Hydrophilic portions of proteins, cholesterol and phospholipids will face outwards and shield internal hydrophobic components
Application: Methods of transport of glucose, amino acids, cholesterol, fats, oxygen and sodium chloride in blood in relation to their solubility in water.
List the examples of monosaccharides.
2.3
Glucose, fructose and ribose
Understanding: Monosaccharide monomers are linked together by condensation reactions to form disaccharides and polysaccharide polymers.
List the examples of monosaccharides, disaccharides and polysaccharides.
2.3
Monosaccharides (one sugar unit) are typically sweet-tasting and function as an immediate energy source for cells
* Examples of monosaccharides include glucose, galactose and fructose
Disaccharides (two sugar units) are small enough to be soluble in water and commonly function as a transport form
* Examples of disaccharides include lactose, maltose and sucrose
Polysaccharides (many sugar units) may be used for energy storage or cell structure, and also play a role in cell recognition
* Examples of polysaccharides include cellulose, glycogen and starch
Understanding: Monosaccharide monomers are linked together by condensation reactions to form disaccharides and polysaccharide polymers.
Outline the structure and function of cellulose.
2.3
- 1-4 bonds
- from beta-glucose
- alternating orientation
- striaght chain
- unbranched
- High tensile strength that prevents bursting of cell walls
Application: Structure and function of cellulose and starch in plants and glycogen in humans.
Outline the structure and function of amylose starch.
2.3
- 1-4 bonds
- from alpha-glucose
- same orientation
- curved chain
- unbranched
- can easily add or take glucose units
- energy storgae of glucose
- helix shape
Application: Structure and function of cellulose and starch in plants and glycogen in humans.
Outline the structure and function of amylopectin starch.
2.3
- 1-4 and 1-6 bonds
- from alpha-glucose
- same orientation
- curved chain
- branched
- can easily add or take glucose units
- energy storgae of glucose
- globular shape
Application: Structure and function of cellulose and starch in plants and glycogen in humans.
Outline the structure and function of glycogen.
2.3
- 1-4 and 1-6 bonds
- from alpha-glucose
- same orientation
- curved chain
- branched
- energy storage of glucose
- in animals and fungi
Application: Structure and function of cellulose and starch in plants and glycogen in humans.
Outline how triglycerides arre formed.
2.3
Triglycerides are formed when condensation reactions occur between one glycerol and three fatty acids
* The hydroxyl groups of glycerol combine with the carboxyl groups of the fatty acids to form an ester linkage
* This condensation reaction results in the formation of three molecules of water
Understanding: Triglycerides are formed by condensation from three fatty
acids and one glycerol.
Outline the functions of lipids and carbohydrates for energy storage.
2.3
- Storage (lipids are more suitable for long-term energy storage)
- Osmolality (lipids have less of an effect on the osmotic pressure of a cell)
- Digestion (carbohydrates are easier to digest and utilise)
- ATP Yield (lipids store more energy per gram)
- Solubility (carbohydrates are easier to transport in the bloodstream)
- Mnemonic: SODAS
Application: Lipids are more suitable for long term energy storage in humans than carbohydrates.
Outline why lipids are more suitable for long term energy storage.
2.3
- Lipids have secondary roles (heat insulators, protection around tissue, hormone signalling etc)
- The amount of energy released in cell respiration per gram of lipids is double that of carbohydrate’s
- Lipids do not carry associated water, so is six times more efficient than carbs in the amount of energy stored per gram body mass
Application: Lipids are more suitable for long term energy storage in humans than carbohydrates.
State the formula for calculating BMI.
2.3
BMI= mass in kg/ (height in metres)^2
Skill: Determination of body mass index by calculation or use of a nomogram.