Topic 2: Genes and Health Flashcards
2.1 i) What are the properties of gas exchange surfaces in living organisms?
- A large surface area to volume ratio (larger objects have smaller surface area to volume ratios than smaller objects).
- A thin surface ensures a short diffusion pathway.
- A steep concentration gradient ensures rapid diffusion.
2.1 ii) What is Fick’s Law?
Fick’s Law of diffusion: the rate of diffusion is proportional to the surface area multiplied by the difference in concentration, divided by the thickness of the gas exchange surface.
2.1 ii) Explain how the rate of diffusion is dependent on certain properties?
- Surface are - the rate of diffusion is directly proportional to the surface area. As the surface area increases, the rate of diffusion increases.
- Concentration gradient - the rate of diffusion is directly proportional to the difference in concentration. The greater the concentration gradient, the faster the rate of diffusion.
- Thickness of gas exchange surface - the rate of diffusion is inversely proportional to the thickness of the gas exchange surface. The thicker the surface, the slower the rate of diffusion.
2.1 iii) How is the structure of the mammalian lung adapted for rapid gaseous exchange?
- Large surface area of the alveoli and the large network of capillaries surrounding the alveoli ensures a large surface area for more diffusion to occur at once.
- The alveolar endothelium and capillary endothelium are each one cell thick, and this thin walls ensures a short diffusion pathway.
- The steep concentration gradient between the alveolar air and the blood is maintained by ventilation of the alveoli and the continuous flow of blood through the lungs.
2.2 i) Explain the basic structure of a cell membrane.
The fluid mosaic model proposes a phospholipid bilayer. Each phospholipid molecule has a hydrophilic phosphate head and a hydrophobic tail made of two fatty acids. The bilayer has the hydrophilic heads on the outside and the hydrophobic tails on the inside.
2.2 i) Why is the cell membrane a bilayer?
Cells are filled with an aqueous cytoplasm and are surrounded by aqueous tissue fluid. A bilayer, however, ensures that the hydrophobic fatty acid tails have no contact with the water on either side of the membrane, and the hydrophilic phosphate heads remain in contact with the aqueous environment.
2.2 i) What other components are found within the cell membrane?
The cell surface membrane also contains:
- glycoproteins: protein molecules with polysaccharides attached
- glycolipids: lipid molecules with polysaccharides attached
- proteins: peripheral proteins, or extrinsic proteins, are loosely attached on the outside surface of the membrane and partially embedded, while integral proteins, or intrinsic proteins, are fully embedded within the phospholipids; the proteins can be enzymes, carrier proteins or channel proteins
- cholesterol: it forms a bond with phospholipids, maintaining the fluidity by ensuring that the bilayer doesn’t become too rigid or too fluid.
2.2 i) Why is the cell membrane more fluid with unsaturated rather than saturated phospholipids making up the bilayer?
The cell membrane is described as fluid because some parts can move around freely (if they are not attached to other parts of the cell). The greater the ratio of phospholipids that contain unsaturated fatty acids to those containing saturated fatty acids, the more fluid the membrane will be. The kinks in the hydrocarbon tails of the unsaturated phospholipids prevent them from packing closely together, so more movement is possible.
2.2 ii) How has scientific data developed the fluid mosaic model?
Before the 1970s, the most widely accepted model was a three-layer membrane, composed of a phospholipid layer between two continuous layers of proteins.
- This was a result of electron microscope images showing three layers, two darker around one lighter layer. However, this model does not allow the hydrophilic phosphate heads to be in contact with water. Improved EM techniques and interpretations supported the bilayer model, with the more electron dense phosphate heads being the two darker edges and the lipid being the lighter inner part.
- Additional experiments showed that the proteins were randomly distributed across the cell membrane rather than in a continuous layer, with some peripheral and others integral.
- Scientists also fused a mouse cell with a human cell, marking a specific membrane protein green in mice and red in humans. After some time, the proteins were completely intermixed - this could only happen through fluid cell membranes.
2.3 Explain osmosis.
Osmosis the net movement of water molecules, across a partially permeable membrane, from a higher concentration of water molecules (and lower concentration of solutes) to a lower concentration of water molecule (and higher concentration of solutes). It is a form of diffusion, and is a passive process.
2.4 i) Explain diffusion.
Diffusion is the net movement of particles from an area of high concentration to an area of lower concentration. While molecules will diffuse both ways, the net movement will be to the area of lower concentration. This will continue until equilibrium is reached, where the particles are evenly distributed. Diffusion is a passive process, so no energy is required. Hydrophobic (lipid-soluble) particles or small uncharged molecules (such as oxygen and carbon dioxide) can diffuse across a membrane. Although carbon dioxide is polar, it’s small enough to diffuse rapidly across.
2.4 i) Explain facilitated diffusion.
Hydrophilic molecules (such as polar ones), charged particles (such as ions bigger than carbon dioxide) and larger molecules (such as amino acids and glucose) are all insoluble in lipids and can’t diffuse through the phospholipid bilayer. Instead they diffuse through carrier proteins or channel proteins through the process of facilitated diffusion. The particles move down a concentration gradient, and this passive process doesn’t require any energy.
2.4 i) Explain active transport.
Active transport allows substances to be moved against a concentration gradient, using energy from ATP (produced during respiration). When the ATP is hydrolysed, a phosphate group is removed and ADP is formed. The phosphate group then becomes hydrated, and a lot of energy is released when it bonds with water. This energy changes the shape of a carrier protein, causing a substance to be released on the other side of the membrane and moving it against the concentration gradient.
2.4 i) Explain endocytosis.
Substances are taken into a cell by the creation of a vesicle from the cell surface membrane. Part of the cell engulfs the substance that is to be transported, and the membrane then pinches off to form a vesicle inside the cell, containing the substance. This process requires energy from ATP, and is used as bulk transport for large molecules or large quantities.
2.4 i) Explain exocytosis.
Exocytosis is the release of substances from the cell. Vesicles (small membrane bound sacs containing the substance) pinch off from the sacs of the Golgi apparatus, and fuse with the cell membrane to release the contents outside the cell. This process requires energy from ATP, and is used as bulk transport for large molecules or large quantities.
2.4 ii) Explain how channel proteins work.
Channel proteins form water filled pores in the membrane, allowing polar molecules and ions to diffuse through. Different channel proteins facilitate the diffusion of difference particles. Each channel protein has a specific shape that permits the passage of only one type of particle. Some channels can be opened or closed depending on the absence or presence of a signal - these are gated channels.
2.4 ii) Explain how carrier proteins work.
The ion or molecule binds to a specific site on the carrier protein embedded in the membrane. The protein changes shape and as a result the particle crosses the membrane. The movement can occur in either direction, with the net movement being dependent on the concentration gradient across the membrane. In facilitated diffusion, down the concentration gradient, this is a passive process. In active transport, against a concentration gradient, this requires energy from ATP.
2.5 i) What is the basic structure of mononucleotides?
A mononucleotide is made from a pentose sugar, a nitrogen-containing organic base and a phosphate group. In DNA the pentose sugar is deoxyribose, and the 4 bases are adenine, thymine, cytosine and guanine. In RNA the pentose sugar is ribose, and the 4 bases are adenine, uracil, cytosine and guanine.
2.5 i) How are polynucleotides composed?
A polynucleotide is a polymer of mononucleotides. The mononucleotides are joined through a condensation reaction between the phosphate of one mononucleotide and the sugar group of another. Water is a by-product. The bond produced between each mononucleotide is a phosophodiester bond.
2.5 ii) Explain DNA’s structure.
Whereas RNA (ribonucleic acid) is a single polynucleotide, DNA (deoxyribonucleic acid) is made from two polynucleotides. The two strands are joined together with hydrogen bonding between the bases: complementary base pairing between A and T and between C and G means there is always an equal amount of A and T in a DNA molecule, and an equal amount of C and G. While A and G have a two-ring structure, T and C have a one-ring structure. The bases pair so there are three rings across two mononucleotides, ensuring the DNA has a uniform width along its whole length. Two hydrogen bonds form between A and T, and three hydrogen bonds form between C and G. The polynucleotides are antiparallel, running in opposite directions, and so twist to form the DNA double helix structure.
2.6 i) Explain transcription.
- At the beginning of transcription, the enzyme RNA polymerase attaches to a start codon on the DNA and breaks the hydrogen bonds between the bases, causing it to unwind. One of the strands in then used as a template strand (antisense strand) to make an mRNA copy.
- The RNA polymerase lines up free RNA mononucleotides alongside the template strand, and complementary base pairing results in the mRNA strand being a complementary copy of the DNA template strand. Once the free RNA mononucleotides have lined up, they’re joined by RNA polymerase in a condensation reaction, forming phosophodiester bonds between each mononucleotide. The mRNA strand has the same base sequence as the DNA coding strand (sense strand), with U instead of T.
- The hydrogen bonds reform between the DNA strands and it winds back up into a double helix as the RNA polymerase moves along. When the RNA polymerase reaches a stop codon, the mRNA is finished being transcribed and detaches from the DNA, moving out of the nucleus through nuclear pores.
2.6 i) Explain translation.
- Once in the cytoplasm, the mRNA attaches to a ribosome where it begins translation. A ribosome is composed of two subunits, with the larger subunit containing two tRNA binding sites, with the mRNA attaching to the smaller subunit.
- The tRNA molecules carry amino acids to the ribosome, where a tRNA molecule, with a complementary anticodon to the start codon on the mRNA, attaches itself to the mRNA by complementary base pairing. A second tRNA molecules attaches itself to the next codon in the same way.
- The two amino acids attached to the tRNA molecules are then joined together by a peptide bond. The first tRNA molecule moves away, leaving the amino acid, and the ribosome moves along to the next codon. The process continues, producing a polypeptide chain, until there’s a stop codon on the mRNA molecule and the polypeptide chain moves away.
2.6 i) Explain how stop codons work.
There are no tRNA molecules with complementary anticodons to stop codons, so no amino acids can be transferrd, the polypeptide chain stops growing and detaches from the ribosome.
2.6 ii) Explain the differences between mRNA and tRNA.
Messenger RNA:
1. Made in the nucleus during transcription.
2. Many codons (one codon is three adjacent bases) along a single, unfolded, polynucleotide strand.
Transfer RNA:
1. Found in the cytoplasm
2. A sequences of three bases called an anticodon on one end, with an amino acid binding site on the other - it is a single polynucleotide strand, but folded with complementary base pairing and hydrogen bond giving it a clover shape.