Thompson in class Flashcards

0
Q

Directors of metabolism?

A

Catabolic and Anabolic.

need ATP and NADH for biosynthetic pathways and create during catabolic.

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1
Q

Why is ATP referred to as high energy molecule?

A

Upon hydrolysis, products are more stable than ATP. Products are ADP and Phosphate. Greater tendency to want to move toward hydrolysis.

due to

  1. charge repulsion
  2. resonance stabilization of phosphate
  3. given aqueous condition of blood in cell, water binds better when have this phosphate than ATP.
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2
Q

What is important form of cellular energy transformation

A

Phosphoryl transfer potential is an important form of cellular energy transformation.

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3
Q

First step of glycolysis?

A

Glucose + Pi –> glucose-6-P + H2O.

catalyzed by hexokinase (in liver)

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4
Q

What is metabolism?

A

ability to harness energy from various sources and channel it into biological work

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5
Q

Energy is derived by doing what to food?

A

Oxidation, yielding glucose and amino acids and triglycerides of lipoproteins in the bloodstream. Then triglycerides are broken down into fatty acids and glycerol in the bloodstream by an enzyme.

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6
Q

What happens to excess fuel after a meal?

A

excess fuel is stored as glycogen and adipose triglyceride, and amino acids are converted to muscle protein.

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7
Q

How is food oxidized to produce ATP?

A

TCA cycle - oxidizes Acetyl CoA, produces CO2, and electrons are passed to NAD+ and FAD. Then NADH and FADH2 transfer the electrons to O2 via the electron transport chain.

Then energy from this transfer of electrons is used to produce ATP by the process of OXIDATIVE PHOSPHORYLATION.

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8
Q

What is oxidative phosphorylation?

A

The coupling of electron transport with ATP synthesis is called oxidative phosphorylation. Transfer of electrons for the nadh or fadh2 which are reduced coenzyme, to carriers along electron transport chain creates proton gradient that allows ATP to be formed.

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9
Q

What is the difference between the outer and inner mitochondrial membranes?

A

“the outer membrane contains special channels (formed by the protein porin), making it freely permeable to most ions and small molecules, the inner membrane is a specialized structure that is impermeable to most small ions”

Inner membrane also has lots of protein involved in oxid. phosph.

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10
Q

What occurs in matrix of mitochondria?

A

“Has lots of protein responsible for oxidation of pyruvate, amino acids, and fatty acids (by β-oxidation) as well as those of the tricarboxylic acid (TCA) cycle.

“The synthesis of glucose, urea, and heme occurs partially in the matrix of mitochondria.

“In addition, the matrix contains NAD+ and FAD (the oxidized forms of the two coenzymes that are required as hydrogen acceptors), and ADP and Pi, which are used to produce ATP. [Note: The matrix also contains mitochondrial DNA (mtDNA) and RNA (mtRNA) and ribosomes

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11
Q

What is the net yield of ATP in oxidative phosphorylation?

A

3 mol ATP per mol NADH oxidized,

2 mol ATP per mol FADH2 oxidized.

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12
Q

Where does oxidative phosphorylation take place and where is the ATP? How does it get transported?

A

It is a mitochondrial process so ATP is in the mitochondrial matrix and transported out to the cytosol by ATP / ADP translocase.

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13
Q

What are the inhibitors that block electron transport down the ETC?

A

Amytal reotenone, antimycin A, sodium azide.

All block flow of electrons from substrate to oxygen.

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14
Q

What causes proton leak which prevents production of ATP coupled with the ETC?

A

Uncoupling proteins allow protons to re-enter the mitochondrial matrix

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15
Q

What are the two substrate shuttles involved in transport of electrons across inner mitochondrial membrane?

A

glycerophosphate shuttle: 2 e’s are transferred from NADH to dihydroxyacetone phosphate by cytosolic glycerophosphate dehydrogenase. The glycerol 3-phosphate produced is oxidized by the mitochondrial isozyme as FAD is reduced to FADH2. CoQ of the ETC oxidizes the FADH2.

The glycerophosphate shuttle, therefore, results in the synthesis of <> for each cytosolic NADH oxidized.

This contrasts with the malate-aspartate shuttle, which produces NADH (rather than FADH2) in the mitochondrial matrix and, therefore, yields <> for each cytosolic NADH oxidized by malate dehydrogenase as oxaloacetate is reduced to malate. A transport protein moves malate into the matrix.

16
Q

Describe function and structure of ATP synthase.

A

It has a F0 portion which is on the inner mitochondrial membrane and has proton pores to allow protons to reenter the mitochondrial matrix. The F1 portion protruding into the mitochondrial matrix side has catalytic activity which allows it to phosphorylate ADP to ATP.

17
Q

What are some functions of the liver?

A

Fatty acid synth, AA synth/degrad, cholesterol and urea synth,
Gluconeogenesis, HMP shunt.

18
Q

Name the common epimers of glucose.

A

Galactose and Glucose are what epimers? C-4.
Mannose and Glucose are what epimers? C-2.
Glucose has -OH groups on right side.
Glucose and Fructose are isomers.

19
Q

What is a glycosidic bond?

A

Glycosidic bond: hydroxyl group on anomeric

carbon of monosaccaharide reacts with hydroxylor amino group of another compound.

20
Q

What is a sugar alcohol? a sugar acid? an amino sugar? acetylated amino sugar?

A

Sugar alcohol is when no aldehyde or ketone group is present.

Sugar acid is when C1 aldehyde or C6 hydroxyl is oxidized to carboxylic acid. (gluconic acid, glucuronic acid).

Amino sugar is when amine substitutes for hydroxyl (i.e. glucosamine).

Acetylated amino sugar is when the amine is acetylated (HN - CO-CH3)

21
Q

What is digested where?

A

a-salivary amylase begins digestion, but fats and proteins get digested in the gut. In particular, isomaltose, lactose, sucrose - are all digested by a-pancreatic amylase, breaking 1,6, glycosidic bonds via special enzymes. Cellulose cannot be digested.

22
Q

Glucose 6 phosphatase does what?

A

It converts glucose 6 phosphate to free glucose. Present in liver and kidney.

23
Q

What are the two substrate shuttles involved in transport of electrons across inner mitochondrial membrane?

A

glycerophosphate shuttle: 2 e’s are transferred from NADH to dihydroxyacetone phosphate by cytosolic glycerophosphate dehydrogenase. The glycerol 3-phosphate produced is oxidized by the mitochondrial isozyme as FAD is reduced to FADH2. CoQ of the ETC oxidizes the FADH2.

The glycerophosphate shuttle, therefore, results in the synthesis of <> for each cytosolic NADH oxidized.

This contrasts with the malate-aspartate shuttle, which produces NADH (rather than FADH2) in the mitochondrial matrix and, therefore, yields <> for each cytosolic NADH oxidized by malate dehydrogenase as oxaloacetate is reduced to malate. A transport protein moves malate into the matrix.

24
Q

Describe function and structure of ATP synthase.

A

It has a F0 portion which is on the inner mitochondrial membrane and has proton pores to allow protons to reenter the mitochondrial matrix. The F1 portion protruding into the mitochondrial matrix side has catalytic activity which allows it to phosphorylate ADP to ATP.

25
Q

What are some functions of the liver?

A

Fatty acid synth, AA synth/degrad, cholesterol and urea synth,
Gluconeogenesis, HMP shunt.

26
Q

Name the common epimers of glucose.

A

Galactose and Glucose are what epimers? C-4.
Mannose and Glucose are what epimers? C-2.
Glucose has -OH groups on right side.
Glucose and Fructose are isomers.

27
Q

What is a glycosidic bond?

A

Glycosidic bond: hydroxyl group on anomeric

carbon of monosaccaharide reacts with hydroxylor amino group of another compound.

28
Q

What is a sugar alcohol? a sugar acid? an amino sugar? acetylated amino sugar?

A

Sugar alcohol is when no aldehyde or ketone group is present.

Sugar acid is when C1 aldehyde or C6 hydroxyl is oxidized to carboxylic acid. (gluconic acid, glucuronic acid).

Amino sugar is when amine substitutes for hydroxyl (i.e. glucosamine).

Acetylated amino sugar is when the amine is acetylated (HN - CO-CH3)

29
Q

What is digested where?

A

a-salivary amylase begins digestion, but fats and proteins get digested in the gut. In particular, isomaltose, lactose, sucrose - are all digested by a-pancreatic amylase, breaking 1,6, glycosidic bonds via special enzymes. Cellulose cannot be digested.

30
Q

Glucose 6 phosphatase does what?

A

It converts glucose 6 phosphate to free glucose. Present in liver and kidney.