Thermodynamics Flashcards

1
Q

[PL]

A

Protein-ligand complex conc.

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2
Q

[L]

A

Ligand conc.

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3
Q

[P]

A

Protein conc.

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4
Q

Dissociation constant

A

Kd

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5
Q

Association constant

A

Ka

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6
Q

Kd units

A

molddm-3

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7
Q

Ka units

A

Mol-1dm3

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8
Q

Relationship between Kd and Ka

A

Kd=1/Ka

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9
Q

B

A

Fractional occupancy = [PL]/([P]+[PL])

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10
Q

Langmuir Isotherm (B as a function of [L])

A

B = [L]/(Kd+[L])

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11
Q

Linearized Langmuir Isotherm

A

ln(B/(1-B)) = ln[L] - lnKd

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12
Q

Gradient of a langmuir isotherm

A

1

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13
Q

Quick dertemination of Kd

A

On a graph of x = [L] and y = B
- Kd = [L]1/2

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14
Q

Hill Isotherm (B as a function of [L])

A

B = [L]^n/(Kd + [L]^n)

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15
Q

Linearized Hill isotherm

A

ln(B/(1-B)) = nln[L] - lnKd

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16
Q

Gradient of Hill Isotherm

A

n (number of ligands bound to each protien

17
Q

Wp+l

A

no. conformations for P + L

18
Q

Wpl

A

no. conformations for PL

19
Q

Kd from Boltzmann distribution

A

Kd = Wp+l/Wpl e^(-Hd/RT)

20
Q

Entropy of disdsociation

A

Sd = RlnWi

21
Q

Entropy of P + L

A

Sp+l = RlnWp+l

22
Q

Entropy of PL

A

Spl = RlnWpl

23
Q

Equation linking G and K

A

G = RTlnK

24
Q

Favourable chnages for G

A

K - Large
G - Negative
H - Negtive
S - positive

25
Q

Equation for G

A

G = H - TS

26
Q

Van’t Hoff plot

A

lnK = H/R 1/T + S/R

27
Q

Describe a DSC output

A
  • X = T
  • Y = delta Cp
  • Area under curve = deltaHm
  • T at peak = Tm
28
Q

DeltaSm

A

DeltaHm/Tm

29
Q

DeltaGm

A

0