Theme 1 Flashcards
What is the importance of understanding natural extinction rates?
Natural extinctions rates tell us what rate we should expect to see species disappearing. By comparing that with real data of how many are observed to be going extinct, or are at high risk of extinction, we can evaluate the effects which we are having on nature. Today, the extinction rate is around 20 times greater than the background extinction rate - this is indicative of a mass extinction event.
What is the background rate of extinction? How does this compare to mass extinctions in the grand scheme?
The background rate of extinction is an estimation of the rate of species extinctions we would expect to see out with extinction events (i.e. under normal levels of environmental pressure). Natural rates of extinction are 0.1-1 extinction per million species per year. This background rate accounts for 95% of all extinctions, and the average species lasts 1-4 million years. Although the rate of extinction is much greater during mass extinction events, they only account for 5% of the total number of extinctions in biological history.
How do mass extinctions drive adaptive radiations? Give an example of this.
The sudden loss of organismal diversity can provide “ecospace” for other organisms to diversify and occupy the newly available niches. For example, after the cretaceous-tertiary boundary event, around 70% of all species died out (most of them being dinosaurs). Where very large and competitive organisms were no longer outcompeting the smaller mammals at the time, and this resulted in the ecological release of mammals. A rapid expansion in disparity of mammals allowed them to occupy many newly available niches by virtue of this freed up ecospace.
Explain the concept of local negative entropy, and how this is key to all life.
Entropy is a measure of how randomly energy is distributed in a system - net entropy of any reaction must always increase (2nd law of thermodynamics). This is not necessarily the entropy of the system, but is the entropy of the universe as a whole.
In order for organisms to survive, they must have highly organised systems, which is not consistent with increase in entropy. Therefore, they must create local negative entropy, whereby the biological system has a decrease in entropy (via processes such as chemical synthesis or mechanical work), but the entropy of the universe still increases due to the dissipation of energy from the biological system. This dissipation includes kinetic energy from mechanical work, excretion of bi-products, release of heat, etc.
What are the requirements/tradeoffs for multicellular life?
The conditions for multicellular life to be viable are highly specific - there are many limiting factors such as sufficient nutrients, intracellular conflict, sufficient oxygen, etc.
They require adaptations such as cell-cell adhesion, cell specialisations, germ-soma separation, and most importantly, alternation of life cycles via a unicellular intermediate.
This unicellular intermediate (zygote) is vital in purging inter-cell variation, facilitating sexual recombination, restoration of telomere length, and mitigation of the impact of deleterious mutations in the somatic cell line.
Discuss the differences in early embryonic development between protostomes and deuterostomes (and cindarians).
From an embryological perspective, all higher (bilateral) animals can be divided into two categories based on the development of their blastula - protostomes and deterostomes. Cnidarians are non-bilateral multicellular animals (such as jellyfish). The blastula is the hollow ball of cells which develops from a zygote. It gastrulates (invaginates) to give rise to the inner endoderm (central tract), and outer ectoderm (outer surfaces such as skin). There are two gastrulations which occur to form blastophores - one for the mouth and one for the anus. Bilateral animals also possess a third layer of tissue between these two - the mesoderm, which gives rise to musculature and internal organs between the digestive tract and skin.
In protostomes, the mouth blastophore invaginates first, but in deuterostomes, the anal blastophore invaginates first. Deuterostomes include echinodermata and chordata. Protostomes include all other bilateral life apart from cnidarians.
What are HOX genes?
HOX genes are a subset of homeobox genes, and are responsible for determining the body plan of a multicelllar organism. They are extremely simple and conserved across all life. Very profound changes can be produced from very small changes to HOX genes. They are transcription factors.
What is lagerstatten?
A good layer of sediment for fossilisation - shows fossil evidence which can be dated back hundreds of millions of years.
What were the major drivers of the Cambrian explosion?
The Cambrian explosion was a huge explosion in abundance and diversity of multicellular life which occurred 490-540 MYA. Potential drivers for this explosion include expansion of the shallow seas alongside the break-up of the supercontinent Pangea, end of a recent ice age, and an increase in atmospheric oxygen. However, these processes may have been too gradual to explain the very rapid explosion in life. It is more likely because of the ecospace created by the Ediacaran mass extinction, and the emergence of predator-prey dynamics creating an arms race.
How can modularity in body plans influence evolutionary radiations? Give an example of this.
Modularity is genetic independence between groups of phenotypic traits. Group of traits which interact with each other at a genetic level are known as modules, and whilst there is a lot of interplay between traits within modules, there is very little between traits of separate modules. This means that the evolution of one trait may avoid a cascading effect where it affects many other traits, helping an organism to avoid tradeoffs.
For example, domestic dogs show variations in their snouts/jaws which far exceeds the variation exhibited in wild dogs, wolves, and coyotes combined. This variation in facial structure has evolved extremely rapidly, with the help of selective breeding. This required a genetic predisposition to profound changes in jaw phenotype with negligible effects on cranial phenotype. Through experimentation, it was found to be true that domestic dogs have separate genetic modules for jaw and cranial shape.
Explain how biologists can determine the genetic basis of particular phenotypes.
Once morphological variations have been quantified (e.g. by principal component analysis), GWAS can be used to determine which allelic changes correspond to specific morphological variations. This is used to inform researchers of likely candidate genes for the variation. Body plan genes are highly conserved across species, which means that model species can be appropriate for experimenting on if the species in question would raise ethical concerns. By interfering with transcription or translation pathways of a particular gene/gene product, causation of certain genotypes regarding their phenotypic influence can be inferred. Morpholinos are molecules which are designed to block the activity of certain genes, and these are commonly used to evaluate the outcomes.
Outline the different geographical modes of speciation.
1) Allopatric speciation:
Occurs when a geographical barrier such a mountain or flowing water physically separates a population into two more groups, and different environmental pressures cause alternative adaptations until the populations, if/when re-introduced, ca no longer interbreed successfully. This requires a large amount of space and time for speciation to occur, and can occur under low or high levels of selection. Extrinsic barriers usually cause no gene flow at all between the divided groups. Allopatric speciation can be tested by measuring sexual isolation against geographic distance.
When the population is split into two or more roughly equally sized groups, this is known as vicariance. An example of this would be the different compliments of species on either side of the Amazon river.
When a small population separates from the main population and diverges this is known as peripatric speciation. These smaller populations will be subjected to a much stronger effect from genetic drift (due to bottlenosing). Evidence for peripatric speciation involves observing isolated, smaller populations having distinct genetic profiles. An example of peripatric speciation is Darwin’s Galapagos finches.
2) Parapatric speciation:
The population splits due to a lack of gene flow across a large area with abutting environmental differences. Restricted gene flow between populations (due to a cline or small geographical barrier) results in reproductive isolation. Space and time must be intermediate, and so must be selection pressure.
For example, water spring salamanders exist in a large extended body of water, but separate lineages develop in caves adjacent to the main body of water - gene flow is restricted to the interface between the cave and the surface.
It is difficult to infer this speciation mechanism, as many examples in nature can be explained as allopatric speciation and then re-introduction.
3) Sympatric speciation:
Reproductive isolation occurs without the influence of any geographical barrier. There is full potential for gene flow within the populations, but a high degree of selection against the mean trait value is imposed (disruptive selection). This means that intermediate phenotypes become a fitness valley, and extreme traits become fitness peaks. A mechanism of assortative mating gradually produces reproductive isolation.
Outline the differences between ecological and genetic speciation paradigms.
The ecological and genetic speciation paradigms consider mechanisms for reproductive isolation from an ecological or genetic perspective rather than from a geographical perspective.
Ecological speciation is the process by which barriers to gene flow evolve between populations as a result of ecologically-based divergent selection.
Contrary to this genetic modes of speciation are where fundamental genetic differences result in divergence (bottlenecks/founder effects, genetic drift hybridisation, etc). These can be slow (e.g. genetic drift), or rapid (e.g. polyploidy).
An example of an instantaneous, non-ecological speciation is observed in frogs. One species is diploid, and another is tetraploid - they may be able to produce a triploid hybrid with intermediate characteristics.
Describe pre and postzygotic incompatibility.
pre/postzygotic incompatibility are types of reproductive isolation, caused by the evolution of genetic differences due to natural selection. Prezygotic incompatibility means that the two genetically distinct organisms will choose not to mate with each other, whereas postzygotic incompatibility means that if/when they do mate, the resulting zygote will not be viable, and no fertile offspring will be produced.
In nature, prezygotic incompatibility is usually observed before postzygotic, meaning that as organisms speciate, they will usually choose not to mate before they become genetically incompatible.
Describe pre and postzygotic incompatibility.
pre/postzygotic incompatibility are types of reproductive isolation, caused by the evolution of genetic differences due to natural selection. Prezygotic incompatibility means that the two genetically distinct organisms will choose not to mate with each other, whereas postzygotic incompatibility means that if/when they do mate, the resulting zygote will not be viable, and no fertile offspring will be produced.
In nature, prezygotic incompatibility is usually observed before postzygotic, meaning that as organisms speciate, they will usually choose not to mate before they become genetically incompatible.
In sympatric pairs of Drosophila, prezygotic isolation occurs at lower genetic distances than in allopatric pairs, due to reinforcement.