the roles of ATP in living cells Flashcards

1
Q

what is metabolism?

A

integrated set of enzymatic reactions comprising both anabolic and catabolic reactions

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2
Q

what is anabolism?

A

synthesis of complex molecules from simpler ones (necessary energy usually derived from ATP.) Pathways end in genesis

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3
Q

what is catabolism?

A

breakdown of energy rich molecules to simpler ones (CO2, H2O, NH3). Pathways end in lysis

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4
Q

what happens to energy when it is released from certain reactions?

A

energy released is captured as adenosine triphosphate (ATP) and stored for later use in anabolic reactions

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5
Q

what is energy required for? 4

what about timing?

A
  • Motion
  • Transport
  • Biosynthesis of essential metabolites
  • Thermoregulation
  • Timing of these processes does not necessarily coincide with feeding times so storage forms of food are required.
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6
Q

what type of systems are cells?

what does this mean? 2

A
  • Cells are isothermal systems *maintain constant temperature)
  • Heat flow cannot be used as a source of energy (heat can only do work when it passes to an area at a lower temperature)
  • Free energy (energy available to perform work) is acquired from nutrient molecules
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7
Q

what is Gibbs free energy (g)? 5

A
  • Energy capable of doing work at a constant temperature and pressure
  • Enthalpy (H)= the heat content of the reacting system
  • Entropy (S)= the randomness or disorder of a system
  • change in Gibbs free energy= change in enthalpy - (temperature x change in entropy)
  • the maximum energy that can be obtained from a reaction at a constant temperature and pressure
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8
Q

what does change in enthalpy reflect? 2

A

the kinds and numbers of chemical bonds that are broken and formed

Positive when energy is absorbed by the reaction

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9
Q

what does change in entropy reflect? 2

A

the formation of large complex molecules from smaller molecules or vice versa

It is positive when randomness increases (breaking up a big molecule into smaller molecules)

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10
Q

for the reaction A-> B

  • What if there is a greater concentration of B than A at equilibrium? 3
  • what if there is a greater concentration of A than B at equilibrium? 3
A

spontaneous or exergonic reaction

  • Free energy is defined as negative
  • Energy is liberated by the reaction
  • Unfavourable or endergonic reaction
  • Free energy is defined as positive
  • Energy input is required to start the reaction
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11
Q

describe exergonic reactions? 3

A
  • Products have less free energy than reactants and are more stable than the reactants. Formation of product is downhill (spontaneous)
  • CATABOLISM= exergonic reactions
  • Change in Gibbs free energy will be negative
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12
Q

describe endergonic reactions? 3

A
  • Products have more free energy than the reactants and are less stable. Formation of products is uphill
  • ANABOLISM- endergonic reactions
  • Change in Gibbs free energy is positive
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13
Q

describe coupling of reactions?

A

An endergonic reaction can be driven in the forward direction by coupling it to an exergonic reaction through a common intermediate

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14
Q

what is ATP? 6

A
  • adenosine triphosphate
  • Provides most of the free energy required for anabolism
  • ATP is the energy currency of the cell
  • Achieved by phosphate group transfer
  • Gibbs free energy: the energy derived from the oxidation of dietary fuels to generate ATP
  • Energy is conserved at ATP and is transduced into useful work
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15
Q

what are ATP/ADP Mg2+ complexes? 3

A
  • ATP in the cytosol is present as a complex with Mg2+
  • Mg2+ interacts with the oxygens of the triphosphate chain making it susceptible to cleavage in the phosphoryl transfer reactions
  • An Mg2+ deficiency impairs virtually all metabolism
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16
Q

what is substrate level phosphorylation? 4

A
  • Formation of ATP by phosphate group transfer from a substrate to ADP
  • Known as SLP to distinguish it from respiration linked phosphorylation
  • SLPs require soluble enzymes and chemical intermediates
  • Respiration linked phosphorylation’s involve membrane bound enzymes and transmembrane gradients of protons and require oxygen
17
Q

what are enzymes? 3

A
  • Biological catalysts that accelerate the rate of chemical reactions
  • Creates a new pathway for the reaction; one with a lower activation energy
  • Do not influence the free energy change of a reaction
18
Q

what types of enzyme classification are important to know? 2

A
  • oxidoreductases, transfer of electrons

- transferases, transfer of functional groups

19
Q

what are cofactors, coenzymes? 5

A
  • Cofactors are non-protein molecules necessary for enzyme activity (metal cations)
  • Most coenzymes are organic molecules derived from vitamins
  • Participate in enzymatic reactions
  • Cycle between oxidised and reduced forms
  • Coenzymes/cosubstrates have a loose association with their enzyme and diffuse between enzymes carrying electrons
20
Q

what are prosthetic groups? 3

A
  • Non protein cofactor that Is covalently bound to the enzyme
  • Not released as part of the reaction
  • Acts as a temporary store for electrons or intermediates
21
Q

name two vitamins and the coenzymes they create?

A
  • B2 (riboflavin)= FAD or FMN

- niacin= NAD+

22
Q

describe the redox coenzymes and prosthetic groups? 5

A
  • Major redox coenzymes/prosthetic groups involved in transduction of energy from dietary foods to ATP= NAD+/ FAD/ FMN
  • Electrons are transferred from dietary material to these carriers coenzymes are reduced
  • In each case, two electrons are transferred but the number of H+ moved varied
  • NAD+ is reduced to NADH
  • FAD is reduced to FADH2
23
Q

what is NAD+? 5

A
  • nicotinamide adenine dinucleotide (NAD+)
  • NAD+ and NADP+ accept pairs of electrons to form NADH or NADPH
  • It is the nicotinamide that is the functional part of the molecule
  • NADH for ATP synthesis
  • NADPH for reductive biosynthesis
24
Q

describe the re-oxidation of redox coenzymes? 2

A
  • Recycling of NADH and FADH2 is via the respiratory chain in the mitochondria
  • This is coupled to ATP synthesis- process of oxidative phosphorylation
25
Q

give an overview of energy metabolism? 7

A
  • proteins, carbohydrates, lipids
  • amino acids, glucose, fatty acids and glycerol
  • glycolysis
  • pyruvate
  • acetyl-CoA
  • citric acid cycle
  • oxidative phosphorylation
26
Q

give an overview of the intermediates in the timing stages of glycolysis? 10

A
  • glucose (ATP->ADP with hexokinase)
  • glucose-6-phosphate (G-6-P)
  • fructose-6-phosphate (F-6-P) (ADP->ATP with PRK-1, committed step)
  • fructose-1,6-biphosphate (FBP)
  • dihydroxyacetone (DHAP)/ glyceraldehyde-3-phosphate(G-3-P) (the one that moves on) (NAD+–>NADH)
  • 1,3-biphosphoglycerate (1,3-BPG) (ADP->ATP)
  • 3-phosphoglycerate
  • 2-phosphoglycerate
  • phosphoenolpyruvate (ADP->ATP with pyruvate kinase)
  • pyruvate
27
Q

what are the different fates of pyruvate? 2

A
  • Under aerobic conditions, it is completely oxidised and completely degraded
  • In hypoxic conditions, it can be reduced to lactate