The Patient Semester 2 Flashcards
How are the chromosomes in prokaryotes presented?
All genetic information is stored on one circular chromosome. There is no nucleosome structure. There is only one copy of each gene (haploid).
How are the chromosomes in eukaryotes presented?
Genetic information is split between several linear chromosomes which are built from nucleosomes. They tend to be diploid.
Why do eukaryotic genes tend to be so much larger?
Because they contain introns.
How many chromosomes are present in human DNA?
46, two of each type.
What is the diameter of the nucleus? Where the chromosomes are contained.
6um
What are chromosomes made of?
Chromatin- dark material in the nucleus.
What are the main chromosomal proteins?
Histones- H1, H2A, H2B, H3, H4.
What do chromosomes look like in their non condensed form?
Beads on a string- the beads are the nucleosomes.
How wide is chromatin?
They are 30nm dark fibres.
What is a nucleosome?
It contains 8 peptide chains packed together to form the central core of a chromosome.
What structure does a nucleosome have?
Octameric, two of each histone type.
What is the size of the cylindrical protein core of a nucleosome?
11nm wide
5.5nm deep
Which histone is responsible for nucleosome packing?
H1
What are the letters given to the arms of a chromosome?
Short arm- P
Long arm- Q
What is a chromosome made up of?
Two sister chromatids.
What is the name of the position where chromatids join?
Centromere
How are chromosomes classified?
By the position of the centromere.
What structures are at the ends of chromosomes?
Telomeres
What is a chromosome classified as if the centromere is…
Central?
Off centre?
At the end?
Central- metacentric
Off centre- sub metacentric
At the end- Acrocentric
What is aneuploidy?
Abnormal number of chromosomes i.e. causation of downs syndrome
What is amniocentesis?
Taking a sample of amniotic fluid during pregnancy to test for chromosomal abnormalities.
What are the two stages of eukaryotic cell division?
Nuclear division
Cytokinesis
How many cells are formed when a diploid cell divides by mitosis?
Two new diploid cells
What are the 5 stages of mitotic nuclear division?
Prophase Pro-metaphase Metaphase Anaphase Telophase
What is the part of the cell cycle between divisions?
Interphase
What separates chromosomes during nuclear division?
Kinetochore microtubules
What are the 3 types of microtubules in the spindle apparatus of mitosis?
Kinetochore microtubules- pull chromosomes
Astral microtubules- star formation
Polar microtubules- grow towards centre of the cell
What is the role of a centrosome in the spindle apparatus?
It is the microtubule organising centre.
What occurs at interphase?
Chromosomes and centrosomes replicated
What occurs at prophase?
Chromosomes begin to condense
Sister chromatids become visible
Mitotic spindle starts to form outside the nucleus
Nuclear envelope starts to disappear
What occurs at pro-metaphase?
Nuclear envelope has broken down into small vesicles
Spindle microtubules enter nuclear region
Microtubules attach to kinetochores
What occurs at metaphase?
Chromosomes held in tension at the metaphase plate- half way between poles
Chromosomes attached to kinetochore microtubules
What occurs at anaphase?
Sudden separation of sister kinetochores
Polar microtubules lengthen
Kinetochore microtubules shorten
Chromosomes move to opposite poles
What occurs at telophase?
Nuclear envelope starts to reform
Chromosomes expand and decondense
Cytoplasm restricts
What is the name given to the splitting of the cytoplasm?
Cytokinesis
What are the three types of microtubules?
Astral
Kinetochore
Polar
What does meiosis produce?
4 haploid cells (gametes)
What occurs at meiosis I?
Mitosis phases occur however prophase is elongated to allow for recombination.
How many chromosomes are there in a gamete?
23
What occurs at meiosis II?
Involves the separation of sister chromatids
In meiosis, what occurs at prophase I?
Chromosomes must find their pair, crossing over occurs.
What are chiasmata?
Junctions that form to form crossing over points for recombination in prophase I.
What does bivalent mean?
The chromosomes lining up side by side in prophase I of meiosis.
What are the difference between monozygotic and dizygotic twins?
Monozygotic- from the same zygote
Dizygotic- from two separately fertilised eggs
Where does genetic variability come from in meiosis?
Recombination
Independent assortment
How many rounds of DNA replication and nuclear division occur?
1 round of replication
2 successive nuclear divisions
What is nondisjunction?
Abnormal separation during meiosis II resulting in gametes with the wrong number of chromosomes.
What is Klinefelter Syndrome?
Gives males an extra X chromosome (XXY)
What is Turner Syndrome?
Gives females only one X chromosome.
What is oogenesis?
Female gamete production
What cells are involved in female gamete production?
Precursor cells are known as oogonia and divide to form oocytes.
What are oocytes?
Gametes that have stopped at the early stage of meiosis I and remain dormant in the ovaries until fertilisation protected by a thin layer of somatic cells called the follicle. When menstruation occurs follicles produce mature oocytes. These arrest at meiosis II until fertilisation.
What are spermatogonia?
Stem cells in males in which meiosis occurs.
What are spermatozoa?
Male gametes formed from spermatogonia.
What effect does smoking have on women’s fertility?
Ages a woman’s body clock by 10 years
Reducing chance of conceiving by 10-40%
Define genetics.
The science of genes, heredity and variation in living organisms.
Define heredity.
The passing of traits from parents to offspring.
What is a trait?
A distinct variant of an observed characteristic.
What is a genotype?
Genetic make up that determines the trait.
What is a phenotype?
Physical appearance of an organism’s trait.
What are alleles?
Variations of a gene.
What are homozygous genes?
A pair of identical alleles for a characteristic.
What are heterozygous genes?
Two different alleles for the same characteristic.
What is true/pure breeding?
Whereby particular characteristics always stay the same, throughout generations.
What is pleiotropy?
An allele which has more than one effect on the phenotype- multiple symptoms can be traced back to one defective allele.
What is a dihybrid cross?
Two separate traits in a single cross such as RR YY.
What is polygenic inheritance?
Multiple genes involved in controlling the phenotype of a trait.
What is co-dominance?
A heterozygote shows some aspects of multiple alleles.
What is a locus?
The specific location of a gene or DNA sequence on a chromosome.
What does each part of this represent in terms of a gene locus?
22q12.2
22- chromosome number
Q- Long arm of chromosome (P being short arm)
12.2- position on the sub-arm: region, band, sub-band (bands are numbered from centromere outwards)
What is pharmacogenomics?
Describes the broader application of genomic technologies to drug discovery and development processes.
What is pharmacogenetics?
The study or clinical testing of individual genes and determining genetic variations in a patient (polymorphisms) that give rise to different drug responses.
Give examples of environmental factors that cause variability in drug metabolism and response.
Chemical/drug exposure Cigarettes Alcohol Drug abuse Concomitant medication Age Pathology Adherence
Give examples of genetic factors that cause variability in drug metabolism and response.
Variability in pharmacokinetics (ADME)
Variability in pharmacodynamics (receptors and drug targets)
What is the Human Genome project?
10 year project to sequence the entire human genome- 20,000-25,000 genes.
What is a UTR on a gene?
Untranslated region- non coding.
What is the most common type of genetic polymorphism?
Single nucleotide polymorphism- SNP.
What are the most common SNPs?
Allelic variants
How often do SNPs occur on average?
Every 250-500 base pairs.
Why are exonic SNPs the most important?
They are able to change the amino acid sequence of a protein.
What occurs in individuals with higher than expected rates of metabolism of a drug?
Lack of efficacy
What occurs in individuals with lower than expected rates of metabolism of a drug?
Adverse drug reactions and potential toxicity.
What is signal transduction?
The process whereby information is transmitted to the inside of the cell.
How does signal transduction occur?
Receptor proteins bind signals, conformational changes in the structure of the receptor occur, this converts the chemical signal into one or more intra-cellular signals.
What are the stages of signal transduction?
Signal- Reception- Amplification- Transduction- Response(s)
What are endogenous messenger molecules?
Molecules within a cell that have an internal effect.
Give examples of naturally occurring chemical messenger groups.
Hormones
Neurotransmitters
Local chemical mediators
What is an agonist drug?
A type of drug that binds to and exerts an effect on a receptor (partial or full).
What is an antagonist drug?
A type of drug which binds to a receptor but doesn’t alter the activity of the receptor it simply prevents an agonist from binding/working (competitive or non-competitive).
What are the two main groups of receptor proteins?
Plasma membrane/transmembrane receptors (extracellular)
Cytosolic/nuclear receptors (intracellular)
On average, how many receptor proteins are there in/on cells?
500-100,000 per cell
What sort of molecule is most likely to bind to plasma membrane receptors?
Water soluble/polar molecules
What sort of molecule is most likely to bind to cytosolic receptors?
Lipid soluble/hydrophobic molecules as they can pass through lipid bilayers.
What are the three families of plasma membrane receptors?
Ligand gated ion cells (ion channel function)
G-protein coupled receptors (GTP binding proteins)
Tyrosine kinase receptors (catalytic domain- for phosphorylation)
What are the general structural points of plasma membrane receptors?
Extra-cellular domain for ligand binding
Trans-membrane domain with at least one alpha helices
Intra-cellular domain rich in basic amino acids, can be for catalytic activity
What do GPC receptors contain?
Have a membrane spanning domain consisting of seven trans membrane helices.
How do tyrosine kinase receptors work?
The activated cytosolic region of the receptor can phosphorylate Tyrosine molecules on other proteins.
How do GPC receptors work?
Receptor is activated which in turn activates the G protein. This activates adenylate cyclase which converts ATP to AMP (a cyclic compound).
How are cytosolic receptors characterised?
The have a ligand binding domain and a DNA binding domain.
How do cytosolic receptors work?
Binding to DNA acting as a transcriptional regulator.
What kind of molecules in particular cannot move through the lipid bilayer?
Polar molecules
How do ions move through the lipid bilayer?
Facilitated diffusion down a concentration gradient through water filled ion channels.
Active transport pumps often against concentration gradients.
Approximately how quickly do water filled pores allow ions to pass through?
~ 10^6-10^7 s^-1
How do ligand gated ion channels work?
Binding of the relevant ligand to the receptor part of the ion channel causing it to open or close.
What are Cationic channels?
Allow positive ions through. Generally excitatory and often lead to depolarisation of the cells. E.g. Acetyl choline receptors
What are anionic channels?
Allow negative ions through. Generally exert inhibitory effects once opened- hyperpolarisation.
What are Nicotinic acetyl choline receptors?
Found at neuromuscular junctions, responsible for transporting Na+ and are lined with negative charges.
What is a Gamma-amino butyric acid receptor?
Selectively conducts Cl- ions resulting in hyper polarisation of the neuron.
What are the subunits of an acetyl choline receptor?
5 in total: Alpha (2), beta, gamma and sigma.
What is the width of an acetyl choline receptor?
9nm in diameter total.
2nm diameter in the centre.
What are the two subtypes of nicotinic receptors?
Muscle-type
Neuronal-type
What is tubocurarine?
A plant extract that acts as a poison by inhibiting the nicotinic acetylcholine receptor. Can be used therapeutically as a muscle relaxant.
How do local anaesthetics work?
They block ion channels and prevent the passage of Na+ ions, therefore reducing pain perception.
How do sedatives work?
Increase the ability of GABA receptors to conduct Cl- ions across membranes, driving the membrane potential away from its threshold for activation, reducing communication between neurones.
Give examples of diseases caused by dysfunction of ion channels.
Cystic Fibrosis (genetic) Hypertension Multiple Sclerosis Epilepsy (genetic) Migraine
Give two examples of ligand gated ion channels.
GABA receptor
Acetylcholine receptor
What is a G-protein?
Guanine nucleotide binding protein.
What is an effector system?
Outside trigger causes conformational change in receptor, this sends a message to a molecule which triggers the formation of an intracellular message.
What is the signal transduction process?
Conformational changes in the structure of a receptor protein convert an extra-cellular chemical signal into one or more intracellular signals.
What roles do G protein coupled receptors have?
Mainly physiological- visual sense, smell, behavioural and mood regulation, immune system regulation, autonomic nervous system transmission.
How are GPCRs activated?
Normally activated by hormones or neurotransmitters such as serotonin receptors, muscarinic acetylcholine receptors, adrenergic receptors.
How do beta adrenergic receptors work?
Switched on by adrenaline/noradrenaline
Generally works to relax smooth muscle.
Treatment for things such as asthma generally involves adrenergic agonists.
Treatment for things such as angina generally involves adrenergic antagonists.
What is the basic structure of a Tyrosine Kinase receptor?
Act as receptors and enzymes.
Single extracellular region with N terminal and binding site for chemical messenger.
Single hydrophobic region that traverses the membrane as an alpha helix of 7 turns.
A C terminal chain inside the cell membrane acting as a catalytic binding site.
What happens when the ligand binds to a TK receptor?
In the resting state, the active site is hidden. Upon binding the receptor changes shape revealing the active site on the C terminal chain which now allows phosphorylation to occur on specific tyrosine residues.
How does the EGF tyrosine kinase receptor work?
EGF is a bivalent ligand so can bind to two receptors at the same time resulting in receptor dimerisation and the activation of enzyme activity allowing phosphorylation to occur.
How do insulin receptors work?
Exist as dimers or tetramers so require only the binding of a ligand to activate the TK receptor.
How do growth hormone receptors work?
They are tyrosine kinase linked receptors so do not have catalytic activity but once dimerised they can bind to activate a TK enzyme in the cytoplasm.
How do protein kinase receptors interact with signalling proteins?
Once phosphorylated, the phosphor-tyrosine groups from a TK receptor act as binding sites for signalling proteins.
What are signalling results?
They depend on which proteins bind to kinase receptors. Generally they are the starting point of phosphorylation cascades.
Example: growth factors activating phospholipase C leading to calcium release.
What is the importance of TK receptors in the kidneys?
Some TK receptors catalyse the formation of cGMP from GTP. They act as both receptor and enzyme (guanylate cyclase).
cGMP opens sodium channels in the kidneys so the excretion of Na+ is promoted.
Give examples of diseases connected to protein kinases.
Cancer, rheumatoid arthritis, asthma, psoriasis.
How can protein kinases be used as drug targets?
Inhibition of phosphorylation activity by blocking ATP binding.
Disruption of protein-protein interactions.
Down-regulation of kinase gene expression.
What are the main features of intracellular receptors?
Not membrane bound, found within cells.
Important in directly regulating gene expression.
Also known as nuclear hormone receptors.
What is the basic structure of intracellular receptors?
Single protein containing a ligand binding site at the C terminal.
Binding region for DNA near the centre with 9 cysteine residues, 8 of which bind zinc ions for stabilising the DNA binding region.
What do intracellular receptors affect?
Homeostasis, embryonic and sexual development, reproductive function, metabolism, bone and muscle maintenance.
How do intracellular receptors work?
A ligand binds to the reduced by the induced fit model, this leads to dimerisation. The dimer binds to a co-activator protein and then the entire complex binds to a specific region of the cells DNA. Two receptors and two binding regions mean that the complex recognises two identical sequences of nucleotides.
Give examples of specific intracellular receptors.
Glucocorticoid
Oestrogen
Progesterone
What are the two major families of transporters in humans?
ATP binding cassettes
Solute carriers
Where are the membrane transporters most relevant in drug development?
Epithelia of the intestine, liver and kidney
Endothelium of the blood-brain barrier
What are the roles of transporters in the liver?
Uptake of drugs from blood into hepatocyte
Excretion of drugs into the bile (efflux)
What are the Organic Anion Transporting Polypeptides?
11 different OATPs
Mediate uptake of substrates in electro-neutral manner- dependent on Na+ and ATP
E.g. OATP1B1- 12 putative transmembrane domains and large extracellular loop
Where are OATPs found?
B1 expressed throughout the liver
B3 mainly in the perivenous areas of the liver
What drug is OATP1B1 mainly responsible for?
Involved in active uptake of statins
How do statins work?
Inhibit HMG-CoA reductase, reducing cholesterol synthesis in the liver.
Give an example of therapeutic consequences of polymorphisms of OATP1B1.
Inter-individual variability in pharmacokinetics of certain drugs
Increased risk of adverse effects (myopathy in statins)
What is rhabdomyolysis?
The breakdown of damaged skeletal muscle, causing the release of myoglobin into the bloodstream. If you have too much myoglobin in your blood, it can cause kidney damage.
Give examples of drugs that inhibit OATP1B1.
Ritonavir
Cyclosporin
What is the consequence of OATP1B1 inhibition?
Increased plasma concentrations of the drug, increased risk of adverse effects.
What do uptake transporters do?
Transport substrates into cells
What do efflux transporters do?
Pump substrates out of cells
What are ABC transporters?
ATP Binding Casettes
What mechanism do efflux transporters use?
Primary active transport using ATP as an energy source
What is P-glycoprotein?
An efflux transporter
A multidrug resistance transporter- MDR1
12 membrane spanning helices
2 nucleotide binding domains (NBDs, bind and hydrolyse ATP)
What is BCRP?
Breast cancer resistant protein, transports methotrexate
What are MRPs?
Multidrug resistance associated proteins, efflux transporters
What are the features of MRP1?
MRP1 – 17 membrane spanning helices and 2 NBDs
What are efflux transporters used for?
Protecting the body from exposure to dietary and environmental xenobiotics e.g. benzo[a]pyrene
Metabolise xenobiotics and then the metabolites excreted.
How can efflux transporters effect drugs?
Absorption
Distribution in tissues/organisms
Metabolism
Excretion
Give examples of P-glycoprotein substrates.
Doxorubicin Daunorubicin Amprenavir Indinavir Atrovastatin Erythromycin
Give examples of BCRP substrates.
EE-O-sulphate
Benzo[a]pyrene-3-sulphate
Where are P-gp and BCRP expressed?
Apical membrane of the intestinal epithelial cells.
What is the main substrate for MRP2 and MRP3?
EE-O-glucoronide (Ethinylestradiol-contraceptive pill)
Give examples of drugs that P-gp reduces the absorption of.
Digoxin
Cyclosporin
What are the two major excretion routes for drugs?
Liver -> bile -> intestine
Kidney -> urine
How does excretion of drugs via the liver occur?
P-gp expressed on hepatocyte canicular membrane
Drugs are pumped into the bile
How does excretion of drugs via the kidney occur?
P-gp expressed in kidney cell membranes, pumped out into the tubular fluid then into the membrane.
What is the Blood-Brain barrier formed by?
Brain capillaries
How to P-gp and BCRPs work in the brain capillaries?
Protect the brain from toxins, however they only allow daily small drug concentrations into the CNS making drug delivery more difficult.
How do efflux transporters work in the placenta?
Protect the developing foetus from drugs and xenobiotics that they are susceptible too.
Example- thalidomide as a teratogen
How do efflux transporters affect cancer cells?
P-gp, BCRP, MRPs expressed in some cancers, pump chemotherapeutic drugs out of malignant cancer cells. Reduces intracellular drug accumulation allowing cells to survive and proliferate.
What are MDRs?
Multi drug resistant cells, do not respond to chemotherapy making them more likely to be fatal
What is pharmacokinetics?
What the body does to the drug.
What is pharmacodynamics?
What the drug does to the body.
What is ADME?
Absorption- GI tract
Distribution- circulation
Metabolism- liver
Excretion- kidneys
What are the three main functions of the GI system?
Digestion of food
Absorption of nutrients (and drugs)
Elimination
What are the 4 regions of the GI tract?
Mouth
Oesophagus
Stomach
Small Intestine
What are the 4 accessory organs of the GI tract?
Salivary glands
Liver
Gall bladder
Pancreas
What occurs in the mouth during digestion?
Breaks up food particles
What occurs in the oesophagus during digestion?
Transport of food to the stomach via sphincter
What occurs in the stomach during digestion?
Secretion of gastric juices for chemical digestion, mixing of food and gastric juices, mechanical break down of food
What is peristalsis?
A series of wave-like muscle contractions that moves food to different processing stations in the digestive tract beginning at the oesophagus.
What role does the stomach play in absorption?
Release of gastric juices (HCl) is controlled by the vagus nerve and the hormone gastrin.
Digestion of proteins (pepsin) is initiated.
What is the role of the mucus coating of the stomach?
Lubricates and protects the epithelial surface against pepsin.
What is chyme?
The acidic fluid which passes from the stomach to the small intestine, consisting of gastric juices and partly digested food.
What affects gastric emptying?
Volume of meal Kcal content Fat content Protein content Liquid/solid state
What are the three regions of the small intestine?
Duodenum
Jejenum
Ileum